|
1
|
/**
|
|
2
|
* Copyright (C) 2007 EDIT
|
|
3
|
* European Distributed Institute of Taxonomy
|
|
4
|
* http://www.e-taxonomy.eu
|
|
5
|
*
|
|
6
|
* The contents of this file are subject to the Mozilla Public License Version 1.1
|
|
7
|
* See LICENSE.TXT at the top of this package for the full license terms.
|
|
8
|
*/
|
|
9
|
|
|
10
|
package eu.etaxonomy.taxeditor.editor;
|
|
11
|
|
|
12
|
import java.util.Arrays;
|
|
13
|
import java.util.HashSet;
|
|
14
|
import java.util.List;
|
|
15
|
import java.util.Set;
|
|
16
|
import java.util.UUID;
|
|
17
|
|
|
18
|
import org.eclipse.jface.resource.ImageDescriptor;
|
|
19
|
import org.eclipse.ui.IEditorInput;
|
|
20
|
import org.eclipse.ui.IMemento;
|
|
21
|
import org.eclipse.ui.IPersistableElement;
|
|
22
|
|
|
23
|
import eu.etaxonomy.cdm.api.application.CdmChangeEvent;
|
|
24
|
import eu.etaxonomy.cdm.api.conversation.ConversationHolder;
|
|
25
|
import eu.etaxonomy.cdm.api.conversation.IConversationEnabled;
|
|
26
|
import eu.etaxonomy.cdm.api.service.IClassificationService;
|
|
27
|
import eu.etaxonomy.cdm.api.service.ITaxonNodeService;
|
|
28
|
import eu.etaxonomy.cdm.api.service.ITaxonService;
|
|
29
|
import eu.etaxonomy.cdm.model.common.CdmBase;
|
|
30
|
import eu.etaxonomy.cdm.model.name.TaxonNameBase;
|
|
31
|
import eu.etaxonomy.cdm.model.taxon.ITaxonTreeNode;
|
|
32
|
import eu.etaxonomy.cdm.model.taxon.Synonym;
|
|
33
|
import eu.etaxonomy.cdm.model.taxon.Taxon;
|
|
34
|
import eu.etaxonomy.cdm.model.taxon.TaxonBase;
|
|
35
|
import eu.etaxonomy.cdm.model.taxon.TaxonNode;
|
|
36
|
import eu.etaxonomy.cdm.model.taxon.TaxonRelationship;
|
|
37
|
import eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType;
|
|
38
|
import eu.etaxonomy.cdm.persistence.hibernate.CdmDataChangeMap;
|
|
39
|
import eu.etaxonomy.taxeditor.model.DataChangeBridge;
|
|
40
|
import eu.etaxonomy.taxeditor.model.MessagingUtils;
|
|
41
|
import eu.etaxonomy.taxeditor.preference.PreferencesUtil;
|
|
42
|
import eu.etaxonomy.taxeditor.store.CdmStore;
|
|
43
|
|
|
44
|
|
|
45
|
/**
|
|
46
|
* <p>TaxonEditorInput class.</p>
|
|
47
|
*
|
|
48
|
* @author n.hoffmann
|
|
49
|
* @created 19.03.2009
|
|
50
|
* @version 1.0
|
|
51
|
*/
|
|
52
|
public class TaxonEditorInput extends CdmEntitySessionInput implements IEditorInput, IConversationEnabled, IPersistableElement {
|
|
53
|
|
|
54
|
private final ConversationHolder conversation;
|
|
55
|
|
|
56
|
private TaxonNode taxonNode;
|
|
57
|
|
|
58
|
private TaxonEditorInputDataChangeBehaviour dataChangeBehavior;
|
|
59
|
|
|
60
|
private TaxonBase initiallySelectedTaxonBase;
|
|
61
|
|
|
62
|
private final ITaxonNodeService service;
|
|
63
|
|
|
64
|
private enum CdmType {
|
|
65
|
TAXON_NODE,
|
|
66
|
TAXON_BASE,
|
|
67
|
PARENT_TAXON_NODE
|
|
68
|
}
|
|
69
|
|
|
70
|
private TaxonEditorInput(UUID uuid, CdmType type) {
|
|
71
|
this.conversation = CdmStore.createConversation();
|
|
72
|
service = CdmStore.getService(ITaxonNodeService.class);
|
|
73
|
switch(type) {
|
|
74
|
case PARENT_TAXON_NODE:
|
|
75
|
initForParentTaxonNode(uuid);
|
|
76
|
break;
|
|
77
|
case TAXON_BASE:
|
|
78
|
initForTaxonBase(uuid);
|
|
79
|
break;
|
|
80
|
case TAXON_NODE:
|
|
81
|
initForTaxonNode(uuid);
|
|
82
|
break;
|
|
83
|
}
|
|
84
|
}
|
|
85
|
|
|
86
|
private void init(TaxonNode taxonNode) {
|
|
87
|
this.taxonNode = taxonNode;
|
|
88
|
}
|
|
89
|
|
|
90
|
|
|
91
|
/**
|
|
92
|
* <p>NewInstance</p>
|
|
93
|
*
|
|
94
|
* @param taxonNodeUuid a {@link java.util.UUID} object.
|
|
95
|
* @return a {@link eu.etaxonomy.taxeditor.editor.TaxonEditorInput} object.
|
|
96
|
* @throws java.lang.Exception if any.
|
|
97
|
*/
|
|
98
|
private void initForTaxonNode(UUID taxonNodeUuid) {
|
|
99
|
|
|
100
|
|
|
101
|
TaxonNode taxonNode = getCdmEntitySession().remoteLoad(service,taxonNodeUuid, null);
|
|
102
|
|
|
103
|
if(taxonNode == null){
|
|
104
|
MessagingUtils.warningDialog("Not yet implemented", TaxonEditorInput.class, "Selected element is not type TaxonBase.");
|
|
105
|
}
|
|
106
|
init(taxonNode);
|
|
107
|
|
|
108
|
}
|
|
109
|
|
|
110
|
private void initForTaxonBase(UUID taxonBaseUuid) {
|
|
111
|
|
|
112
|
TaxonBase taxonBase = getCdmEntitySession().remoteLoad(CdmStore.getService(ITaxonService.class),taxonBaseUuid);
|
|
113
|
if (taxonBase != null){
|
|
114
|
if(taxonBase.isInstanceOf(Taxon.class)){
|
|
115
|
Taxon taxon = CdmBase.deproxy(taxonBase, Taxon.class);
|
|
116
|
|
|
117
|
if (taxon.getTaxonNodes().size() == 0 && taxon.isMisapplication()){
|
|
118
|
// TODO get accepted taxon
|
|
119
|
MessagingUtils.info("trying to open Mispplied Name ");
|
|
120
|
|
|
121
|
Set<Taxon> acceptedTaxa = new HashSet<Taxon>();
|
|
122
|
Set<TaxonRelationship> relations = taxon.getRelationsFromThisTaxon();
|
|
123
|
for(TaxonRelationship relation : relations){
|
|
124
|
if(relation.getType().equals(TaxonRelationshipType.MISAPPLIED_NAME_FOR())){
|
|
125
|
acceptedTaxa.add(relation.getToTaxon());
|
|
126
|
}
|
|
127
|
}
|
|
128
|
setInputForMultipleTaxa(conversation, acceptedTaxa);
|
|
129
|
|
|
130
|
}else{
|
|
131
|
setInputForMultipleNodes(conversation, taxon.getTaxonNodes());
|
|
132
|
}
|
|
133
|
}else if(taxonBase instanceof Synonym){
|
|
134
|
Synonym synonym = (Synonym) taxonBase;
|
|
135
|
|
|
136
|
Set<Taxon> taxa = synonym.getAcceptedTaxa();
|
|
137
|
setInputForMultipleTaxa(conversation, taxa);
|
|
138
|
}
|
|
139
|
}
|
|
140
|
}
|
|
141
|
|
|
142
|
|
|
143
|
/**
|
|
144
|
* <p>NewEmptyInstance</p>
|
|
145
|
*
|
|
146
|
* @param parentNodeUuid a {@link java.util.UUID} object.
|
|
147
|
* @return a {@link eu.etaxonomy.taxeditor.editor.TaxonEditorInput} object.
|
|
148
|
*/
|
|
149
|
private void initForParentTaxonNode(UUID parentNodeUuid){
|
|
150
|
|
|
151
|
|
|
152
|
TaxonNameBase<?, ?> name = PreferencesUtil.getPreferredNomenclaturalCode().getNewTaxonNameInstance(null);
|
|
153
|
ITaxonTreeNode parentNode = CdmStore.getService(IClassificationService.class).getTreeNodeByUuid(parentNodeUuid);
|
|
154
|
|
|
155
|
Taxon newTaxon = Taxon.NewInstance(name, parentNode.getReference());
|
|
156
|
TaxonNode newTaxonNode = parentNode.addChildTaxon(newTaxon, parentNode.getReference(), parentNode.getMicroReference());
|
|
157
|
|
|
158
|
// add the new taxon to the editors persistence context
|
|
159
|
UUID newTaxonNodeUuid = getCdmEntitySession().remoteSave(CdmStore.getService(ITaxonNodeService.class),newTaxonNode);
|
|
160
|
|
|
161
|
initForTaxonNode(newTaxonNodeUuid);
|
|
162
|
}
|
|
163
|
|
|
164
|
|
|
165
|
|
|
166
|
|
|
167
|
private void setInputForMultipleNodes(ConversationHolder conversation, Set<TaxonNode> taxonNodes){
|
|
168
|
if(taxonNodes.size() == 1){
|
|
169
|
TaxonNode taxonNode = taxonNodes.iterator().next();
|
|
170
|
init(taxonNode);
|
|
171
|
}else if(taxonNodes.size() > 1){
|
|
172
|
TaxonNode taxonNode = ChooseFromMultipleTaxonNodesDialog.choose(taxonNodes);
|
|
173
|
if(taxonNode != null){
|
|
174
|
init(taxonNode);
|
|
175
|
}
|
|
176
|
}else if(taxonNodes.size() == 0){
|
|
177
|
// this is an undesired state
|
|
178
|
MessagingUtils.warningDialog("Incorrect state", TaxonEditorInput.class, "The accepted taxon is not part of any classification. This should not have happened.");
|
|
179
|
}
|
|
180
|
}
|
|
181
|
|
|
182
|
private void setInputForMultipleTaxa(ConversationHolder conversation, Set<Taxon> taxa){
|
|
183
|
if(taxa.size() == 1){
|
|
184
|
Taxon taxon = taxa.iterator().next();
|
|
185
|
Set<TaxonNode> nodes = taxon.getTaxonNodes();
|
|
186
|
setInputForMultipleNodes(conversation, nodes);
|
|
187
|
}else if(taxa.size() > 1){
|
|
188
|
Set<TaxonNode> taxonNodes = new HashSet<TaxonNode>();
|
|
189
|
for ( Taxon taxon : taxa ){
|
|
190
|
taxonNodes.addAll(taxon.getTaxonNodes());
|
|
191
|
}
|
|
192
|
setInputForMultipleNodes(conversation, taxonNodes);
|
|
193
|
}else if(taxa.size() == 0){
|
|
194
|
// this is an undesired state
|
|
195
|
MessagingUtils.warningDialog("Incorrect state", TaxonEditorInput.class, "Trying to open accepted taxon for a synonym or misapplication but" +
|
|
196
|
" no accepted taxa are present. This should not have happened.");
|
|
197
|
}
|
|
198
|
}
|
|
199
|
|
|
200
|
/**
|
|
201
|
* <p>NewInstance</p>
|
|
202
|
*
|
|
203
|
* @param taxonNodeUuid a {@link java.util.UUID} object.
|
|
204
|
* @return a {@link eu.etaxonomy.taxeditor.editor.TaxonEditorInput} object.
|
|
205
|
* @throws java.lang.Exception if any.
|
|
206
|
*/
|
|
207
|
public static TaxonEditorInput NewInstance(UUID taxonNodeUuid) throws Exception {
|
|
208
|
return new TaxonEditorInput(taxonNodeUuid, CdmType.TAXON_NODE);
|
|
209
|
|
|
210
|
}
|
|
211
|
|
|
212
|
/**
|
|
213
|
* <p>NewInstanceFromTaxonBase</p>
|
|
214
|
*
|
|
215
|
* @param taxonBaseUuid a {@link java.util.UUID} object.
|
|
216
|
* @return a {@link eu.etaxonomy.taxeditor.editor.TaxonEditorInput} object.
|
|
217
|
*/
|
|
218
|
public static TaxonEditorInput NewInstanceFromTaxonBase(UUID taxonBaseUuid){
|
|
219
|
return new TaxonEditorInput(taxonBaseUuid, CdmType.TAXON_BASE);
|
|
220
|
}
|
|
221
|
|
|
222
|
|
|
223
|
|
|
224
|
|
|
225
|
/**
|
|
226
|
* <p>NewEmptyInstance</p>
|
|
227
|
*
|
|
228
|
* @param parentNodeUuid a {@link java.util.UUID} object.
|
|
229
|
* @return a {@link eu.etaxonomy.taxeditor.editor.TaxonEditorInput} object.
|
|
230
|
*/
|
|
231
|
public static TaxonEditorInput NewEmptyInstance(UUID parentNodeUuid){
|
|
232
|
return new TaxonEditorInput(parentNodeUuid, CdmType.PARENT_TAXON_NODE);
|
|
233
|
}
|
|
234
|
|
|
235
|
/* (non-Javadoc)
|
|
236
|
* @see org.eclipse.ui.IEditorInput#exists()
|
|
237
|
*/
|
|
238
|
/**
|
|
239
|
* <p>exists</p>
|
|
240
|
*
|
|
241
|
* @return a boolean.
|
|
242
|
*/
|
|
243
|
@Override
|
|
244
|
public boolean exists() {
|
|
245
|
return taxonNode != null;
|
|
246
|
}
|
|
247
|
|
|
248
|
/* (non-Javadoc)
|
|
249
|
* @see org.eclipse.ui.IEditorInput#getImageDescriptor()
|
|
250
|
*/
|
|
251
|
/**
|
|
252
|
* <p>getImageDescriptor</p>
|
|
253
|
*
|
|
254
|
* @return a {@link org.eclipse.jface.resource.ImageDescriptor} object.
|
|
255
|
*/
|
|
256
|
@Override
|
|
257
|
public ImageDescriptor getImageDescriptor() {
|
|
258
|
return null;
|
|
259
|
}
|
|
260
|
|
|
261
|
/* (non-Javadoc)
|
|
262
|
* @see org.eclipse.ui.IEditorInput#getName()
|
|
263
|
*/
|
|
264
|
/**
|
|
265
|
* <p>getName</p>
|
|
266
|
*
|
|
267
|
* @return a {@link java.lang.String} object.
|
|
268
|
*/
|
|
269
|
@Override
|
|
270
|
public String getName() {
|
|
271
|
if(getTaxon() == null){
|
|
272
|
return null;
|
|
273
|
}
|
|
274
|
TaxonNameBase<?, ?> name = getTaxon().getName();
|
|
275
|
if (name == null || name.getTitleCache() == null) {
|
|
276
|
return "New taxon";
|
|
277
|
} else {
|
|
278
|
return name.getTitleCache();
|
|
279
|
}
|
|
280
|
}
|
|
281
|
|
|
282
|
/* (non-Javadoc)
|
|
283
|
* @see org.eclipse.ui.IEditorInput#getPersistable()
|
|
284
|
*/
|
|
285
|
/**
|
|
286
|
* <p>getPersistable</p>
|
|
287
|
*
|
|
288
|
* @return a {@link org.eclipse.ui.IPersistableElement} object.
|
|
289
|
*/
|
|
290
|
@Override
|
|
291
|
public IPersistableElement getPersistable() {
|
|
292
|
// if(CdmStore.isActive()){
|
|
293
|
// TaxonNode test = CdmStore.getTaxonTreeService().getTaxonNodeByUuid(taxonNode.getUuid());
|
|
294
|
// boolean isPersistable = CdmStore.getTaxonTreeService().getTaxonNodeByUuid(taxonNode.getUuid()) != null;
|
|
295
|
// if (isPersistable) {
|
|
296
|
// return this;
|
|
297
|
// }
|
|
298
|
// }
|
|
299
|
return null;
|
|
300
|
}
|
|
301
|
|
|
302
|
/* (non-Javadoc)
|
|
303
|
* @see org.eclipse.ui.IEditorInput#getToolTipText()
|
|
304
|
*/
|
|
305
|
/**
|
|
306
|
* <p>getToolTipText</p>
|
|
307
|
*
|
|
308
|
* @return a {@link java.lang.String} object.
|
|
309
|
*/
|
|
310
|
@Override
|
|
311
|
public String getToolTipText() {
|
|
312
|
return getName();
|
|
313
|
}
|
|
314
|
|
|
315
|
/* (non-Javadoc)
|
|
316
|
* @see org.eclipse.core.runtime.IAdaptable#getAdapter(java.lang.Class)
|
|
317
|
*/
|
|
318
|
/** {@inheritDoc} */
|
|
319
|
@Override
|
|
320
|
public Object getAdapter(Class adapter) {
|
|
321
|
|
|
322
|
if (adapter == Taxon.class) {
|
|
323
|
return getTaxon();
|
|
324
|
}
|
|
325
|
|
|
326
|
if (adapter == TaxonNode.class) {
|
|
327
|
return taxonNode;
|
|
328
|
}
|
|
329
|
|
|
330
|
return null;
|
|
331
|
}
|
|
332
|
|
|
333
|
/**
|
|
334
|
* {@inheritDoc}
|
|
335
|
*
|
|
336
|
* Overrides equals to ensure that a taxon can only be edited by
|
|
337
|
* one editor at a time.
|
|
338
|
*/
|
|
339
|
@Override
|
|
340
|
public boolean equals(Object obj) {
|
|
341
|
if (TaxonEditorInput.class.equals(obj.getClass())
|
|
342
|
&& getTaxon() != null
|
|
343
|
&& getTaxon().equals(((TaxonEditorInput) obj).getTaxon())){
|
|
344
|
if(((TaxonEditorInput) obj).getInitiallySelectedTaxonBase() != null){
|
|
345
|
setInitiallySelectedTaxonBase(((TaxonEditorInput) obj).getInitiallySelectedTaxonBase());
|
|
346
|
}
|
|
347
|
return true;
|
|
348
|
}
|
|
349
|
return false;
|
|
350
|
}
|
|
351
|
|
|
352
|
/**
|
|
353
|
* <p>getTaxon</p>
|
|
354
|
*
|
|
355
|
* @return the taxon
|
|
356
|
*/
|
|
357
|
public Taxon getTaxon(){
|
|
358
|
Taxon taxon = CdmBase.deproxy(taxonNode.getTaxon(), Taxon.class);
|
|
359
|
return taxon;
|
|
360
|
}
|
|
361
|
|
|
362
|
/**
|
|
363
|
* <p>Getter for the field <code>taxonNode</code>.</p>
|
|
364
|
*
|
|
365
|
* @return the taxonNode
|
|
366
|
*/
|
|
367
|
public TaxonNode getTaxonNode() {
|
|
368
|
return taxonNode;
|
|
369
|
}
|
|
370
|
|
|
371
|
/*
|
|
372
|
* (non-Javadoc)
|
|
373
|
* @see eu.etaxonomy.cdm.api.conversation.IConversationEnabled#getConversationHolder()
|
|
374
|
*/
|
|
375
|
/**
|
|
376
|
* <p>getConversationHolder</p>
|
|
377
|
*
|
|
378
|
* @return a {@link eu.etaxonomy.cdm.api.conversation.ConversationHolder} object.
|
|
379
|
*/
|
|
380
|
@Override
|
|
381
|
public ConversationHolder getConversationHolder() {
|
|
382
|
return conversation;
|
|
383
|
}
|
|
384
|
|
|
385
|
/*
|
|
386
|
* (non-Javadoc)
|
|
387
|
* @see eu.etaxonomy.cdm.persistence.hibernate.ICdmPostCrudObserver#update(eu.etaxonomy.cdm.persistence.hibernate.CdmCrudEvent)
|
|
388
|
*/
|
|
389
|
/** {@inheritDoc} */
|
|
390
|
@Override
|
|
391
|
public void update(CdmDataChangeMap events) {
|
|
392
|
if(dataChangeBehavior == null){
|
|
393
|
dataChangeBehavior = new TaxonEditorInputDataChangeBehaviour(this);
|
|
394
|
}
|
|
395
|
|
|
396
|
DataChangeBridge.handleDataChange(events, dataChangeBehavior);
|
|
397
|
}
|
|
398
|
|
|
399
|
/* (non-Javadoc)
|
|
400
|
* @see org.eclipse.ui.IPersistableElement#getFactoryId()
|
|
401
|
*/
|
|
402
|
/**
|
|
403
|
* <p>getFactoryId</p>
|
|
404
|
*
|
|
405
|
* @return a {@link java.lang.String} object.
|
|
406
|
*/
|
|
407
|
@Override
|
|
408
|
public String getFactoryId() {
|
|
409
|
return TaxonEditorInputFactory.getFactoryId();
|
|
410
|
}
|
|
411
|
|
|
412
|
/* (non-Javadoc)
|
|
413
|
* @see org.eclipse.ui.IPersistable#saveState(org.eclipse.ui.IMemento)
|
|
414
|
*/
|
|
415
|
/** {@inheritDoc} */
|
|
416
|
@Override
|
|
417
|
public void saveState(IMemento memento) {
|
|
418
|
TaxonEditorInputFactory.saveState(memento, this);
|
|
419
|
}
|
|
420
|
|
|
421
|
|
|
422
|
/**
|
|
423
|
* <p>Setter for the field <code>initiallySelectedTaxonBase</code>.</p>
|
|
424
|
*
|
|
425
|
* @param taxonBase a {@link eu.etaxonomy.cdm.model.taxon.TaxonBase} object.
|
|
426
|
*/
|
|
427
|
public void setInitiallySelectedTaxonBase(TaxonBase taxonBase) {
|
|
428
|
this.initiallySelectedTaxonBase = taxonBase;
|
|
429
|
}
|
|
430
|
|
|
431
|
/**
|
|
432
|
* <p>Getter for the field <code>initiallySelectedTaxonBase</code>.</p>
|
|
433
|
*
|
|
434
|
* @return a {@link eu.etaxonomy.cdm.model.taxon.TaxonBase} object.
|
|
435
|
*/
|
|
436
|
public TaxonBase getInitiallySelectedTaxonBase() {
|
|
437
|
return initiallySelectedTaxonBase;
|
|
438
|
}
|
|
439
|
|
|
440
|
@Override
|
|
441
|
public String toString() {
|
|
442
|
return String.format("%s[%s]", this.getClass().getSimpleName(), getTaxon());
|
|
443
|
}
|
|
444
|
|
|
445
|
/* (non-Javadoc)
|
|
446
|
* @see eu.etaxonomy.taxeditor.editor.CdmEntitySessionInput#getService()
|
|
447
|
*/
|
|
448
|
@Override
|
|
449
|
public ITaxonNodeService getService() {
|
|
450
|
return service;
|
|
451
|
}
|
|
452
|
|
|
453
|
|
|
454
|
/* (non-Javadoc)
|
|
455
|
* @see eu.etaxonomy.taxeditor.editor.CdmEntitySessionInput#getRootEntities()
|
|
456
|
*/
|
|
457
|
@Override
|
|
458
|
public List<TaxonNode> getRootEntities() {
|
|
459
|
return Arrays.asList(taxonNode);
|
|
460
|
}
|
|
461
|
|
|
462
|
|
|
463
|
/* (non-Javadoc)
|
|
464
|
* @see eu.etaxonomy.taxeditor.editor.CdmEntitySessionInput#update()
|
|
465
|
*/
|
|
466
|
@Override
|
|
467
|
public <T extends CdmBase> void update() {
|
|
468
|
taxonNode = getCdmEntitySession().remoteUpdate(service, taxonNode);
|
|
469
|
}
|
|
470
|
|
|
471
|
/* (non-Javadoc)
|
|
472
|
* @see eu.etaxonomy.cdm.api.application.ICdmChangeListener#onChange(eu.etaxonomy.cdm.api.application.CdmChangeEvent)
|
|
473
|
*/
|
|
474
|
@Override
|
|
475
|
public void onChange(CdmChangeEvent event) {
|
|
476
|
// TODO Auto-generated method stub
|
|
477
|
|
|
478
|
}
|
|
479
|
|
|
480
|
}
|