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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.taxeditor.io.wizard;
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import java.net.URI;
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import java.util.ArrayList;
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import java.util.List;
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import org.eclipse.swt.SWT;
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import org.eclipse.swt.events.SelectionAdapter;
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import org.eclipse.swt.events.SelectionEvent;
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import org.eclipse.swt.events.SelectionListener;
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import org.eclipse.swt.layout.GridData;
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import org.eclipse.swt.layout.GridLayout;
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import org.eclipse.swt.widgets.Button;
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import org.eclipse.swt.widgets.Combo;
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import org.eclipse.swt.widgets.Composite;
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import eu.etaxonomy.cdm.io.specimen.abcd206.in.Abcd206ImportConfigurator;
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import eu.etaxonomy.cdm.model.name.NomenclaturalCode;
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import eu.etaxonomy.taxeditor.databaseAdmin.wizard.AbstractPreferenceWizard;
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import eu.etaxonomy.taxeditor.preference.IPreferenceKeys;
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import eu.etaxonomy.taxeditor.preference.PreferencesUtil;
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/**
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*
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* @author pplitzner
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*
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*/
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public class AbcdImportConfiguratorWizardPage extends AbstractPreferenceWizard implements SelectionListener {
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public static final String PAGE_NAME = "AbcdImportConfiguratorWizardPage";
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private Abcd206ImportConfigurator abcdImportConfigurator;
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private List<URI> biocaseProvider = new ArrayList<>();
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private boolean isPreferencePage = false;
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private Combo nomenclaturalCodeSelectionCombo;
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protected AbcdImportConfiguratorWizardPage(String title, String description, Abcd206ImportConfigurator configurator) {
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super(PAGE_NAME);
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this.abcdImportConfigurator = configurator;
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setTitle(title);
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setDescription(description);
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}
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protected AbcdImportConfiguratorWizardPage(String title, String description, Abcd206ImportConfigurator configurator, boolean isPreferencePage) {
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super(PAGE_NAME);
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this.abcdImportConfigurator = configurator;
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setTitle(title);
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setDescription(description);
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this.isPreferencePage = isPreferencePage;
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}
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public static AbcdImportConfiguratorWizardPage createPage(Abcd206ImportConfigurator configurator){
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return new AbcdImportConfiguratorWizardPage("Configure import parameters",
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"Tooltips will explain parameters in more detail", configurator);
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}
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public static AbcdImportConfiguratorWizardPage createPreferencePage(Abcd206ImportConfigurator configurator){
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return new AbcdImportConfiguratorWizardPage("Configure import parameters",
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"Tooltips will explain parameters in more detail", configurator, true);
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}
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/** {@inheritDoc} */
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@Override
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public void createControl(Composite parent) {
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final Composite composite = new Composite(parent, SWT.NULL);
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//composite = addTab(Messages.DatabasePreferencesPage_Define_Default_NomenclaturalCode);
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GridLayout gridLayout = new GridLayout();
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composite.setLayout(gridLayout);
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// if (isPreferencePage){
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// ListComponent list = new ListComponent(composite, composite.getStyle());
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// }
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Button checkBoxMediaSpecimen = new Button(composite, SWT.CHECK);
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checkBoxMediaSpecimen.setSelection(abcdImportConfigurator.isAddMediaAsMediaSpecimen());
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checkBoxMediaSpecimen.setText("Import media as media specimen");
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checkBoxMediaSpecimen
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.setToolTipText("Any media attached to a ABCD unit will be imported as a sub derivative of the specimen created from this unit");
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checkBoxMediaSpecimen.addSelectionListener(new SelectionAdapter() {
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@Override
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public void widgetSelected(SelectionEvent e) {
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abcdImportConfigurator.setAddMediaAsMediaSpecimen(!abcdImportConfigurator.isAddMediaAsMediaSpecimen());
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}
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});
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Button checkBoxIgnoreExisting = new Button(composite, SWT.CHECK);
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checkBoxIgnoreExisting.setSelection(abcdImportConfigurator.isIgnoreImportOfExistingSpecimen());
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checkBoxIgnoreExisting.setText("Do not import existing specimens");
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checkBoxIgnoreExisting
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.setToolTipText("Specimens that have previously been imported will be ignored in this import");
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checkBoxIgnoreExisting.addSelectionListener(new SelectionAdapter() {
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@Override
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public void widgetSelected(SelectionEvent e) {
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abcdImportConfigurator.setIgnoreImportOfExistingSpecimen(!abcdImportConfigurator.isIgnoreImportOfExistingSpecimen());
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}
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});
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Button checkBoxIgnoreAuthorship = new Button(composite, SWT.CHECK);
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checkBoxIgnoreAuthorship.setSelection(abcdImportConfigurator.isIgnoreAuthorship());
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checkBoxIgnoreAuthorship.setText("Ignore Authorship for name matching");
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checkBoxIgnoreAuthorship
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.setToolTipText("Name matching with existing names will be done without "
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+ "the authorship part of the name");
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checkBoxIgnoreAuthorship.addSelectionListener(new SelectionAdapter() {
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@Override
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public void widgetSelected(SelectionEvent e) {
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abcdImportConfigurator.setIgnoreAuthorship(!abcdImportConfigurator.isIgnoreAuthorship());
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}
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});
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Button checkBoxMapUnitIdToCatalogNumber = new Button(composite, SWT.CHECK);
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checkBoxMapUnitIdToCatalogNumber.setSelection(abcdImportConfigurator.isMapUnitIdToCatalogNumber());
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checkBoxMapUnitIdToCatalogNumber.setText("Map UnitID to catalog number");
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checkBoxMapUnitIdToCatalogNumber
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.setToolTipText("The UnitID of every ABCD unit will be mapped the catalog number "
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+ "of the specimen");
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checkBoxMapUnitIdToCatalogNumber.addSelectionListener(new SelectionAdapter() {
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@Override
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public void widgetSelected(SelectionEvent e) {
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abcdImportConfigurator.setMapUnitIdToCatalogNumber(!abcdImportConfigurator.isMapUnitIdToCatalogNumber());
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}
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});
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//TODO: only one of the mappings can be checked!
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Button checkBoxMapUnitIdToAccessionNumber = new Button(composite, SWT.CHECK);
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checkBoxMapUnitIdToAccessionNumber.setSelection(abcdImportConfigurator.isMapUnitIdToAccessionNumber());
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checkBoxMapUnitIdToAccessionNumber.setText("Map UnitID to accession number");
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checkBoxMapUnitIdToAccessionNumber
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.setToolTipText("The UnitID of every ABCD unit will be mapped the accession number "
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+ "of the specimen");
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checkBoxMapUnitIdToAccessionNumber.addSelectionListener(new SelectionAdapter() {
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@Override
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public void widgetSelected(SelectionEvent e) {
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abcdImportConfigurator.setMapUnitIdToAccessionNumber(!abcdImportConfigurator.isMapUnitIdToAccessionNumber());
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}
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});
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Button checkBoxMapUnitIdToBarcode = new Button(composite, SWT.CHECK);
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checkBoxMapUnitIdToBarcode.setSelection(abcdImportConfigurator.isMapUnitIdToBarcode());
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checkBoxMapUnitIdToBarcode.setText("Map UnitID to barcode");
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checkBoxMapUnitIdToBarcode
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.setToolTipText("The UnitID of every ABCD unit will be mapped the barcode "
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+ "of the specimen");
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checkBoxMapUnitIdToBarcode.addSelectionListener(new SelectionAdapter() {
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@Override
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public void widgetSelected(SelectionEvent e) {
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abcdImportConfigurator.setMapUnitIdToBarcode(!abcdImportConfigurator.isMapUnitIdToBarcode());
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}
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});
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Button checkBoxRemoveCountry = new Button(composite, SWT.CHECK);
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checkBoxRemoveCountry.setSelection(abcdImportConfigurator.isRemoveCountryFromLocalityText());
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checkBoxRemoveCountry.setText("Remove country from locality text");
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checkBoxRemoveCountry
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.setToolTipText("If the locality text contains information about the "
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+ "country which is additionally stored in other ABCD "
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+ "elements then it is removed from the locality text");
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checkBoxRemoveCountry.addSelectionListener(new SelectionAdapter() {
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@Override
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public void widgetSelected(SelectionEvent e) {
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abcdImportConfigurator.setRemoveCountryFromLocalityText(!abcdImportConfigurator.isRemoveCountryFromLocalityText());
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}
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});
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Button checkBoxMoveToDefaultClassification = new Button(composite, SWT.CHECK);
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checkBoxMoveToDefaultClassification.setSelection(abcdImportConfigurator.isMoveNewTaxaToDefaultClassification());
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checkBoxMoveToDefaultClassification.setText("Create new classification for new taxa");
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checkBoxMoveToDefaultClassification
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.setToolTipText("For taxa that do not exist in the data base "
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+ "a new classification will be created");
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checkBoxMoveToDefaultClassification.addSelectionListener(new SelectionAdapter() {
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@Override
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public void widgetSelected(SelectionEvent e) {
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abcdImportConfigurator.setMoveNewTaxaToDefaultClassification(!abcdImportConfigurator.isMoveNewTaxaToDefaultClassification());
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}
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});
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Button checkBoxImportSiblings = new Button(composite, SWT.CHECK);
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checkBoxImportSiblings.setSelection(abcdImportConfigurator.isGetSiblings());
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checkBoxImportSiblings.setText("Import all children of cultures or tissue samples");
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checkBoxImportSiblings
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.setToolTipText("For a tissue sample or culture all children will be searched and imported");
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checkBoxImportSiblings.addSelectionListener(new SelectionAdapter() {
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@Override
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public void widgetSelected(SelectionEvent e) {
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abcdImportConfigurator.setGetSiblings(checkBoxImportSiblings.getSelection());
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}
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});
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Button checkBoxAddIndividualsAssociations = new Button(composite, SWT.CHECK);
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checkBoxAddIndividualsAssociations.setSelection(abcdImportConfigurator.isAddIndividualsAssociationsSuchAsSpecimenAndObservations());
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checkBoxAddIndividualsAssociations.setText("Create an Individual Association for each Specimen");
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checkBoxAddIndividualsAssociations
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.setToolTipText("For each specimen associated to a taxon an indiviadual association to this taxon is created");
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checkBoxAddIndividualsAssociations.addSelectionListener(new SelectionAdapter() {
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@Override
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public void widgetSelected(SelectionEvent e) {
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abcdImportConfigurator.setAddIndividualsAssociationsSuchAsSpecimenAndObservations(!abcdImportConfigurator.isAddIndividualsAssociationsSuchAsSpecimenAndObservations());
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}
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});
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Button checkBoxReuseDescriptiveGroups = new Button(composite, SWT.CHECK);
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checkBoxReuseDescriptiveGroups.setSelection(abcdImportConfigurator.isReuseExistingDescriptiveGroups());
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checkBoxReuseDescriptiveGroups.setText("Reuse existing descriptive group");
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checkBoxReuseDescriptiveGroups
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.setToolTipText("Reuse one of the existing descriptive groups or create a new one for every import");
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checkBoxReuseDescriptiveGroups.addSelectionListener(new SelectionAdapter() {
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@Override
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public void widgetSelected(SelectionEvent e) {
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abcdImportConfigurator.setReuseExistingDescriptiveGroups(!abcdImportConfigurator.isReuseExistingDescriptiveGroups());
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}
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});
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Button checkBoxReuseExistingTaxa = new Button(composite, SWT.CHECK);
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checkBoxReuseExistingTaxa.setSelection(abcdImportConfigurator.isReuseExistingTaxaWhenPossible());
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checkBoxReuseExistingTaxa.setText("Reuse existing taxa when possible");
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checkBoxReuseExistingTaxa
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.setToolTipText("Reuse existing taxa when the name matches the identified name of the specimen");
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checkBoxReuseExistingTaxa.addSelectionListener(new SelectionAdapter() {
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@Override
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public void widgetSelected(SelectionEvent e) {
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abcdImportConfigurator.setReuseExistingDescriptiveGroups(!abcdImportConfigurator.isReuseExistingDescriptiveGroups());
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}
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});
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GridData gridData = new GridData();
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gridData = new GridData(GridData.BEGINNING, GridData.CENTER, true, false);
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gridData.horizontalIndent = 5;
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// classificationSelection.setLayoutData(gridData);
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nomenclaturalCodeSelectionCombo = new Combo(composite, SWT.BORDER| SWT.READ_ONLY);
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nomenclaturalCodeSelectionCombo.setLayoutData(gridData);
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for(NomenclaturalCode code: NomenclaturalCode.values()){
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nomenclaturalCodeSelectionCombo.add(code.getKey());
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}
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// TODO remember last selection
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nomenclaturalCodeSelectionCombo.addSelectionListener(this);
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int index = 0;
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if (abcdImportConfigurator.getNomenclaturalCode() != null){
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for (String label : nomenclaturalCodeSelectionCombo.getItems()){
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if (label.equals(abcdImportConfigurator.getNomenclaturalCode().getKey())){
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nomenclaturalCodeSelectionCombo.select(index);
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}
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index++;
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}
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}
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setControl(composite);
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}
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@Override
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public void widgetSelected(SelectionEvent e) {
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this.abcdImportConfigurator.setNomenclaturalCode(NomenclaturalCode.getByKey(nomenclaturalCodeSelectionCombo.getText()));
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}
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public void saveConfigToPrefernceStore() {
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PreferencesUtil.setBooleanValue(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_ADD_INDIVIDUALS_ASSOCIATIONS_SUCH_AS_SPECIMEN_AND_OBSERVATIONS,
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abcdImportConfigurator.isAddIndividualsAssociationsSuchAsSpecimenAndObservations());
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PreferencesUtil.setBooleanValue(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_ADD_MEDIA_AS_MEDIASPECIMEN,
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abcdImportConfigurator.isAddMediaAsMediaSpecimen());
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PreferencesUtil.setBooleanValue(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_ALLOW_REUSE_OTHER_CLASSIFICATIONS,
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abcdImportConfigurator.isAllowReuseOtherClassifications());
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PreferencesUtil.setBooleanValue(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_DEDUPLICATE_CLASSIFICATIONS,
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abcdImportConfigurator.isDeduplicateClassifications());
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PreferencesUtil.setBooleanValue(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_REMOVE_COUNTRY_FROM_LOCALITY_TEXT,
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abcdImportConfigurator.isRemoveCountryFromLocalityText());
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PreferencesUtil.setBooleanValue(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_DEDUPLICATE_REFERENCES,
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abcdImportConfigurator.isDeduplicateReferences());
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PreferencesUtil.setBooleanValue(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_DO_SIBLINGS,
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abcdImportConfigurator.isGetSiblings());
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PreferencesUtil.setBooleanValue(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_IGNORE_AUTHORSHIP,
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abcdImportConfigurator.isIgnoreAuthorship());
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PreferencesUtil.setBooleanValue(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_IGNORE_IMPORT_OF_EXISTING_SPECIMEN,
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abcdImportConfigurator.isIgnoreImportOfExistingSpecimen());
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PreferencesUtil.setBooleanValue(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_MAP_UNIT_ID_TO_ACCESSION_NUMBER,
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abcdImportConfigurator.isMapUnitIdToAccessionNumber());
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PreferencesUtil.setBooleanValue(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_MAP_UNIT_ID_TO_BARCODE,
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abcdImportConfigurator.isMapUnitIdToBarcode());
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PreferencesUtil.setBooleanValue(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_MAP_UNIT_ID_TOCATALOG_NUMBER,
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abcdImportConfigurator.isMapUnitIdToCatalogNumber());
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PreferencesUtil.setBooleanValue(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_MOVE_NEW_TAXA_TO_DEFAULT_CLASSIFICATION,
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abcdImportConfigurator.isMoveNewTaxaToDefaultClassification());
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PreferencesUtil.setBooleanValue(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_OVERWRITE_EXISTING_SPECIMEN,
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abcdImportConfigurator.isOverwriteExistingSpecimens());
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PreferencesUtil.setBooleanValue(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_REUSE_EXISTING_DESCRIPTIVE_GROUPS,
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abcdImportConfigurator.isReuseExistingDescriptiveGroups());
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PreferencesUtil.setBooleanValue(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_REUSE_EXISTING_META_DATA,
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abcdImportConfigurator.isReuseExistingMetaData());
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PreferencesUtil.setBooleanValue(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_REUSE_EXISTING_TAXA_WHEN_POSSIBLE,
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abcdImportConfigurator.isReuseExistingTaxaWhenPossible());
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if ( abcdImportConfigurator.getNomenclaturalCode() != null){
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PreferencesUtil.setStringValue(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_NOMENCLATURAL_CODE, abcdImportConfigurator.getNomenclaturalCode().getKey());
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}
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}
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public String createConfigString(){
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return abcdImportConfigurator.toString();
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}
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/* (non-Javadoc)
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* @see org.eclipse.swt.events.SelectionListener#widgetDefaultSelected(org.eclipse.swt.events.SelectionEvent)
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*/
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@Override
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public void widgetDefaultSelected(SelectionEvent e) {
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// TODO Auto-generated method stub
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}
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public void createAbcdImportConfig() {
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this.abcdImportConfigurator.setAddIndividualsAssociationsSuchAsSpecimenAndObservations(PreferencesUtil.getBooleanValue(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_ADD_INDIVIDUALS_ASSOCIATIONS_SUCH_AS_SPECIMEN_AND_OBSERVATIONS));
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this.abcdImportConfigurator.setAddMediaAsMediaSpecimen(PreferencesUtil.getBooleanValue(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_ADD_MEDIA_AS_MEDIASPECIMEN));
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this.abcdImportConfigurator.setAllowReuseOtherClassifications(PreferencesUtil.getBooleanValue(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_ALLOW_REUSE_OTHER_CLASSIFICATIONS));
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//this.abcdImportConfigurator.setClassificationUuid(PreferencesUtil.getBooleanValue(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_CLASSIFICATION_UUID));
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this.abcdImportConfigurator.setDeduplicateClassifications(PreferencesUtil.getBooleanValue(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_DEDUPLICATE_CLASSIFICATIONS));
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this.abcdImportConfigurator.setDeduplicateReferences(PreferencesUtil.getBooleanValue(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_DEDUPLICATE_REFERENCES));
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// this.abcdImportConfigurator.setDefaultAuthor(PreferencesUtil.getBooleanValue(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_DEFAULT_AUTHOR));
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this.abcdImportConfigurator.setGetSiblings(PreferencesUtil.getBooleanValue(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_DO_SIBLINGS));
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this.abcdImportConfigurator.setIgnoreAuthorship(PreferencesUtil.getBooleanValue(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_IGNORE_AUTHORSHIP));
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this.abcdImportConfigurator.setIgnoreImportOfExistingSpecimen(PreferencesUtil.getBooleanValue(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_IGNORE_IMPORT_OF_EXISTING_SPECIMEN));
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this.abcdImportConfigurator.setMapUnitIdToAccessionNumber(PreferencesUtil.getBooleanValue(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_MAP_UNIT_ID_TO_ACCESSION_NUMBER));
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this.abcdImportConfigurator.setMapUnitIdToBarcode(PreferencesUtil.getBooleanValue(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_MAP_UNIT_ID_TO_BARCODE));
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this.abcdImportConfigurator.setMapUnitIdToCatalogNumber(PreferencesUtil.getBooleanValue(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_MAP_UNIT_ID_TOCATALOG_NUMBER));
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this.abcdImportConfigurator.setMoveNewTaxaToDefaultClassification(PreferencesUtil.getBooleanValue(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_MOVE_NEW_TAXA_TO_DEFAULT_CLASSIFICATION));
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this.abcdImportConfigurator.setReuseExistingDescriptiveGroups(PreferencesUtil.getBooleanValue(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_REUSE_EXISTING_DESCRIPTIVE_GROUPS));
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this.abcdImportConfigurator.setReuseExistingTaxaWhenPossible(PreferencesUtil.getBooleanValue(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_REUSE_EXISTING_TAXA_WHEN_POSSIBLE));
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}
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}
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