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// $Id$
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/**
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* Copyright (C) 2016 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.taxeditor.molecular.io;
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import javax.xml.namespace.QName;
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/**
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* Contains constants for <i>RDF</i> predicates used in the I/O of single read alignments e.g. from and to the <i>NeXML</i> format.
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*
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* @author Ben Stöver
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* @date 27.10.2016
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*/
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public interface SingleReadAlignmentRDFXMLConstants {
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public static final String NAMESPACE_URI_PREFIX = "http://bioinfweb.info/xmlns/PhyDE/ReadAlignment/"; //TODO Possibly change this namespace, when according decision is made.
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public static final String PREDICATE_NAMESPACE_URI = NAMESPACE_URI_PREFIX + "Predicates/";
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public static final String PREDICATE_NAMESPACE_PREFIX = "ra";
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public static final String DATA_TYPE_NAMESPACE_URI = NAMESPACE_URI_PREFIX + "DataTypes/";
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public static final String DATA_TYPE_NAMESPACE_PREFIX = "radt";
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public static final String PHEROGRAM_ALIGNMENT_NAMESPACE_URI = NAMESPACE_URI_PREFIX + "PherogramAlignment/";
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public static final String PHEROGRAM_ALIGNMENT_NAMESPACE_PREFIX = "pha";
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public static final QName PREDICATE_IS_SINGLE_READ = new QName(PREDICATE_NAMESPACE_URI, "isSingleRead", PREDICATE_NAMESPACE_PREFIX);
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public static final QName PREDICATE_IS_CONSENSUS_SEQUENCE = new QName(PREDICATE_NAMESPACE_URI, "isConsensus", PREDICATE_NAMESPACE_PREFIX);
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public static final QName PREDICATE_IS_REVERSE_COMPLEMENTED = new QName(PREDICATE_NAMESPACE_URI, "isRCed", PREDICATE_NAMESPACE_PREFIX);
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public static final QName PREDICATE_HAS_PHEROGRAM = new QName(PREDICATE_NAMESPACE_URI, "hasPherogram", PREDICATE_NAMESPACE_PREFIX);
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public static final QName PREDICATE_HAS_PHEROGRAM_ALIGNMENT = new QName(PREDICATE_NAMESPACE_URI, "hasPherogramAlignment", PREDICATE_NAMESPACE_PREFIX);
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public static final QName PREDICATE_HAS_LEFT_CUT_POSITION = new QName(PREDICATE_NAMESPACE_URI, "hasLeftCutPosition", PREDICATE_NAMESPACE_PREFIX);
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public static final QName PREDICATE_HAS_RIGHT_CUT_POSITION = new QName(PREDICATE_NAMESPACE_URI, "hasRightCutPosition", PREDICATE_NAMESPACE_PREFIX);
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public static final QName DATA_TYPE_PHERORAGM_ALIGNMENT = new QName(DATA_TYPE_NAMESPACE_URI, "pherogramAlignment", DATA_TYPE_NAMESPACE_PREFIX);
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public static final QName TAG_SHIFTS = new QName(PHEROGRAM_ALIGNMENT_NAMESPACE_URI, "shifts", PHEROGRAM_ALIGNMENT_NAMESPACE_PREFIX);
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public static final QName TAG_SHIFT = new QName(PHEROGRAM_ALIGNMENT_NAMESPACE_URI, "shift", PHEROGRAM_ALIGNMENT_NAMESPACE_PREFIX);
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public static final QName ATTR_POSITION = new QName(PHEROGRAM_ALIGNMENT_NAMESPACE_URI, "pos", PHEROGRAM_ALIGNMENT_NAMESPACE_PREFIX);
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public static final QName ATTR_SHIFT = new QName(PHEROGRAM_ALIGNMENT_NAMESPACE_URI, "shift", PHEROGRAM_ALIGNMENT_NAMESPACE_PREFIX);
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}
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