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// $Id$
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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.taxeditor.io;
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import java.io.File;
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import java.io.InputStream;
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import java.nio.file.Files;
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import java.nio.file.Path;
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import java.nio.file.Paths;
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import java.util.UUID;
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import org.apache.commons.io.IOUtils;
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import org.eclipse.core.runtime.Assert;
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import org.eclipse.core.runtime.IProgressMonitor;
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import org.eclipse.core.runtime.IStatus;
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import org.eclipse.core.runtime.Status;
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import org.eclipse.core.runtime.jobs.Job;
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import org.eclipse.swt.widgets.Display;
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import eu.etaxonomy.cdm.api.application.CdmApplicationState;
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import eu.etaxonomy.cdm.api.application.ICdmApplicationConfiguration;
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import eu.etaxonomy.cdm.common.monitor.IRemotingProgressMonitor;
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import eu.etaxonomy.cdm.io.common.CdmDefaultImport;
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import eu.etaxonomy.cdm.io.common.IImportConfigurator;
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import eu.etaxonomy.cdm.io.common.IImportConfigurator.SOURCE_TYPE;
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import eu.etaxonomy.cdm.io.excel.taxa.NormalExplicitImportConfigurator;
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import eu.etaxonomy.cdm.io.jaxb.JaxbImportConfigurator;
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import eu.etaxonomy.cdm.io.reference.endnote.in.EndnoteImportConfigurator;
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import eu.etaxonomy.cdm.io.sdd.in.SDDImportConfigurator;
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import eu.etaxonomy.cdm.io.service.IIOService;
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import eu.etaxonomy.cdm.io.specimen.abcd206.in.Abcd206ImportConfigurator;
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import eu.etaxonomy.cdm.io.specimen.excel.in.SpecimenCdmExcelImportConfigurator;
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import eu.etaxonomy.cdm.io.tcsxml.in.TcsXmlImportConfigurator;
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import eu.etaxonomy.taxeditor.model.AbstractUtility;
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import eu.etaxonomy.taxeditor.model.CdmProgressMonitorAdapter;
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import eu.etaxonomy.taxeditor.model.MessagingUtils;
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import eu.etaxonomy.taxeditor.operation.IPostMoniteredOperationEnabled;
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import eu.etaxonomy.taxeditor.store.CdmStore;
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import eu.etaxonomy.taxeditor.store.internal.TaxeditorStorePlugin;
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/**
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* <p>
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* ImportHandler class.
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* </p>
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*
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* @author n.hoffmann
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* @created Sep 11, 2009
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* @version 1.0
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*/
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public class ImportManager extends AbstractIOManager<IImportConfigurator> implements IPostMoniteredOperationEnabled {
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/**
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* @param applicationConfiguration
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*/
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private ImportManager(ICdmApplicationConfiguration applicationConfiguration) {
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super(applicationConfiguration);
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}
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/**
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* <p>
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* NewInstance
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* </p>
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*
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* @param applicationConfiguration
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* a
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* {@link eu.etaxonomy.cdm.api.application.CdmApplicationController}
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* object.
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* @return a {@link eu.etaxonomy.taxeditor.io.ImportManager} object.
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*/
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public static ImportManager NewInstance(
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ICdmApplicationConfiguration applicationConfiguration) {
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return new ImportManager(applicationConfiguration);
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}
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/**
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* Use when importing data into the current application context
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*
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* @param configurator
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* a {@link eu.etaxonomy.cdm.io.common.IImportConfigurator}
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* object.
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* @return a {@link org.eclipse.core.runtime.jobs.Job} object.
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*/
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@Override
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protected Job createIOJob(final IImportConfigurator configurator) {
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Assert.isNotNull(configurator, "Configuration may not be null");
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final Display display = Display.getDefault();
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Job job = new Job("Import: " + configurator.getClass().getSimpleName()) {
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@Override
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protected IStatus run(IProgressMonitor monitor) {
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monitor.beginTask("Importing data", 100);
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configurator.setProgressMonitor(CdmProgressMonitorAdapter
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.CreateSubMonitor(monitor, 70));
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monitor.worked(5);
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CdmDefaultImport<IImportConfigurator> importer = new CdmDefaultImport<IImportConfigurator>();
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importer.setCdmAppController(applicationConfiguration);
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monitor.worked(5);
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try {
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importer.invoke(configurator);
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monitor.worked(80);
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} catch (RuntimeException e) {
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MessagingUtils.messageDialog(
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"Error importing data",
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this,
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"An error occured while"
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+ "importing from source '"
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+ configurator.getSourceNameString()
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+ "'.\n"
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+ "Please check error log for details.", e);
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}
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monitor.worked(5);
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monitor.done();
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display.asyncExec(new Runnable() {
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@Override
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public void run() {
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CdmStore.getContextManager().notifyContextRefresh();
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}
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});
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return Status.OK_STATUS;
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}
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};
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return job;
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}
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public Job createIOServiceJob(IImportConfigurator configurator, InputStream is, SOURCE_TYPE type) {
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try {
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return createIOServiceJob(configurator, IOUtils.toByteArray(is), type);
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} catch (Exception e) {
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MessagingUtils.errorDialog("Error importing input stream",
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this,
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e.getMessage(),
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TaxeditorStorePlugin.PLUGIN_ID,
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e,
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true);
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}
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return null;
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}
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public Job createIOServiceJob(IImportConfigurator configurator, File importFile, SOURCE_TYPE type) {
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Path path = Paths.get(importFile.toURI());
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try {
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return createIOServiceJob(configurator, Files.readAllBytes(path), type);
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} catch (Exception e) {
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MessagingUtils.errorDialog("Error importing file",
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this,
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e.getMessage(),
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TaxeditorStorePlugin.PLUGIN_ID,
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e,
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true);
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}
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return null;
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}
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public Job createIOServiceJob(final IImportConfigurator configurator, final byte[] data, final SOURCE_TYPE type) {
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Assert.isNotNull(configurator, "Configuration may not be null");
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final Display display = Display.getDefault();
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Job job = new Job("Import: " + configurator.getClass().getSimpleName()) {
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@Override
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protected IStatus run(IProgressMonitor monitor) {
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monitor.beginTask("Importing data", IProgressMonitor.UNKNOWN);
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IIOService ioService = CdmApplicationState.getIOService();
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ioService.importData(configurator, data, type);
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monitor.done();
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display.asyncExec(new Runnable() {
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@Override
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public void run() {
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CdmStore.getContextManager().notifyContextRefresh();
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}
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});
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return Status.OK_STATUS;
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}
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};
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return job;
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}
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public void runMoniteredOperation(IImportConfigurator configurator, InputStream is, SOURCE_TYPE type) {
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try {
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runMoniteredOperation(configurator, IOUtils.toByteArray(is), type);
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} catch (Exception e) {
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MessagingUtils.errorDialog("Error importing input stream",
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this,
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e.getMessage(),
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TaxeditorStorePlugin.PLUGIN_ID,
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e,
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true);
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}
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}
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public void runMoniteredOperation(IImportConfigurator configurator, File importFile, SOURCE_TYPE type) {
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Path path = Paths.get(importFile.toURI());
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try {
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runMoniteredOperation(configurator, Files.readAllBytes(path), type);
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} catch (Exception e) {
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MessagingUtils.errorDialog("Error importing input stream",
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this,
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e.getMessage(),
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TaxeditorStorePlugin.PLUGIN_ID,
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e,
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true);
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}
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}
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public void runMoniteredOperation(final IImportConfigurator configurator, final byte[] data, final SOURCE_TYPE type) {
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IIOService ioService = CdmApplicationState.getIOService();
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final UUID uuid = ioService.monitImportData(configurator, data, type);
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Display.getDefault().asyncExec(new Runnable() {
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@Override
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public void run() {
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AbstractUtility.executeMoniteredOperation("Import: " + configurator.getClass().getSimpleName(),
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uuid,
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1000,
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false,
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ImportManager.this);
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}
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});
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}
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private IImportConfigurator getConfigurator(TYPE type) {
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Assert.isNotNull(type, "Type should not be null");
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switch (type) {
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case Jaxb:
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return JaxbImportConfigurator.NewInstance(null, null);
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case Tcs:
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return TcsXmlImportConfigurator.NewInstance(null, null);
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case Endnote:
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return EndnoteImportConfigurator.NewInstance(null, null);
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case Excel_Taxa:
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return NormalExplicitImportConfigurator.NewInstance(null, null,
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null, null);
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case Abcd:
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return Abcd206ImportConfigurator.NewInstance(null, null);
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case Sdd:
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return SDDImportConfigurator.NewInstance(null, null);
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case SpecimenCdmExcel:
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return SpecimenCdmExcelImportConfigurator.NewInstance(null, null);
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default:
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MessagingUtils.notImplementedMessage(this);
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throw new IllegalArgumentException("Import not supported yet");
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}
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}
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/**
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* <p>
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* JaxbConfigurator
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* </p>
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*
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* @return a {@link eu.etaxonomy.cdm.io.jaxb.JaxbImportConfigurator} object.
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*/
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public final JaxbImportConfigurator JaxbConfigurator() {
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return (JaxbImportConfigurator) getConfigurator(TYPE.Jaxb);
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}
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/**
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* <p>
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* TcsConfigurator
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* </p>
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*
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* @return a {@link eu.etaxonomy.cdm.io.tcsxml.in.TcsXmlImportConfigurator}
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* object.
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*/
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public final TcsXmlImportConfigurator TcsConfigurator() {
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return (TcsXmlImportConfigurator) getConfigurator(TYPE.Tcs);
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}
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/**
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* <p>
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* EndnoteConfigurator
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* </p>
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*
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* @return a
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* {@link eu.etaxonomy.cdm.io.reference.endnote.in.EndnoteImportConfigurator}
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* object.
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*/
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public final EndnoteImportConfigurator EndnoteConfigurator() {
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return (EndnoteImportConfigurator) getConfigurator(TYPE.Endnote);
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}
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/**
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* <p>
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* NormalExplicitConfigurator
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* </p>
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*
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* @return a
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* {@link eu.etaxonomy.cdm.io.excel.taxa.NormalExplicitImportConfigurator}
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* object.
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320
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*/
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public final NormalExplicitImportConfigurator NormalExplicitConfigurator() {
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return (NormalExplicitImportConfigurator) getConfigurator(TYPE.Excel_Taxa);
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}
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325
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/**
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* <p>
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* SddConfigurator
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328
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* </p>
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*
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* @return a {@link eu.etaxonomy.cdm.io.sdd.in.SDDImportConfigurator}
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* object.
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*/
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public final SDDImportConfigurator SddConfigurator() {
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return (SDDImportConfigurator) getConfigurator(TYPE.Sdd);
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}
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337
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/**
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338
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* <p>
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339
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* AbcdConfigurator
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340
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* </p>
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*
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* @return a
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* {@link eu.etaxonomy.cdm.io.specimen.abcd206.in.Abcd206ImportConfigurator}
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* object.
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345
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*/
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346
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public final Abcd206ImportConfigurator AbcdConfigurator() {
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return (Abcd206ImportConfigurator) getConfigurator(TYPE.Abcd);
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}
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349
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public SpecimenCdmExcelImportConfigurator SpecimenCdmExcelImportConfigurator() {
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return (SpecimenCdmExcelImportConfigurator) getConfigurator(TYPE.SpecimenCdmExcel);
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}
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353
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354
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/**
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355
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* {@inheritDoc}
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356
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*/
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357
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@Override
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358
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public void postOperation(IRemotingProgressMonitor monitor) {
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359
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Display.getDefault().asyncExec(new Runnable() {
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360
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361
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@Override
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362
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public void run() {
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363
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CdmStore.getContextManager().notifyContextRefresh();
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364
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}
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});
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366
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}
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368
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369
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}
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