Project

General

Profile

« Previous | Next » 

Revision 960d1a20

Added by Patrick Plitzner over 6 years ago

ref #6902 migrate alignment editor and pherogram view

View differences:

eu.etaxonomy.taxeditor.molecular/plugin.xml
1 1 
<?xml version="1.0" encoding="UTF-8"?>
2 2 
<?eclipse version="3.4"?>
3 3 
<plugin>
4 
   <extension
5 
         point="org.eclipse.ui.editors">
6 
      <editor
7 
            class="eu.etaxonomy.taxeditor.molecular.editor.AlignmentEditor"
8 
            default="false"
9 
            id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor"
10 
            name="%editor.ALIGNMENT_EDITOR">
11 
      </editor>
12 
   </extension>
13 
      <extension
14 
            point="org.eclipse.ui.views">
15 
         <view
16 
               allowMultiple="true"
17 
               class="eu.etaxonomy.taxeditor.molecular.editor.PherogramViewPart"
18 
               id="eu.etaxonomy.taxeditor.molecular.PherogramView"
19 
               name="%view.PHEROGRAM_VIEW"
20 
               restorable="true">
21 
         </view>
22 
      </extension>
23 
      <extension
24 
            point="org.eclipse.ui.commands">
25 
         <command
26 
               id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.cutPherogramLeft"
27 
               name="%command.name.CUT_PHEROGRAM_LEFT">
28 
         </command>
29 
         <command
30 
               id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.cutPherogramRight"
31 
               name="%command.name.CUT_PHEROGRAM_RIGHT">
32 
         </command>
33 
         <command
34 
               id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.reverseComplementRows"
35 
               name="%command.name.REVERSE_COMPLEMENT_SELECTED_ROWS">
36 
         </command>
37 
         <command
38 
               id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.createConsensus"
39 
               name="%command.name.CREATE_CONSENUS_SEQUENCE">
40 
         </command>
41 
         <command
42 
               id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.updateConsensus"
43 
               name="%command.name.UPDATE_CONSENSUS_SEQUENCE">
44 
         </command>
45 
         <command
46 
               id="eu.etaxonomy.taxeditor.molecular.pherogramComponent.toggleShowProbabilities"
47 
               name="%command.name.TOGGLE_SHOW_PROBABILITY_VALUES">
48 
         </command>
49 
         <command
50 
               id="eu.etaxonomy.taxeditor.molecular.pherogramComponent.toggleShowBaseCallLines"
51 
               name="%command.name.TOGGLE_SHOW_BASE_CALL_LINES">
52 
         </command>
53 
         <command
54 
               id="eu.etaxonomy.taxeditor.molecular.pherogramComponent.changeQualityOutput"
55 
               name="%command.name.CHANGE_QUALITY_OUTPUT">
56 
         </command>
57 
         <command
58 
               id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.loadPherogram"
59 
               name="%command.name.LOAD_PHEROGRAM">
60 
         </command>
61 
         <command
62 
               id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.toggleInsertOverwrite"
63 
               name="%command.name.TOGGLE_INSERT_OVERWRITE">
64 
         </command>
65 
         <command
66 
               id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.toggleLeftRightInsertion"
67 
               name="%command.name.TOGGLE_LEFT_RIGHT_INSERTION">
68 
         </command>
69 
      </extension>
70 4 
      <extension
71 5 
            point="org.eclipse.ui.menus">
72 6 
         <menuContribution
......
103 37 
               </command>
104 38 
            </toolbar>
105 39 
         </menuContribution>
106 
         <menuContribution
107 
               allPopups="false"
108 
               locationURI="menu:org.eclipse.ui.main.menu">
109 
            <menu
110 
                  label="%menu.ALIGNMENT_EDITOR">
111 
               <command
112 
                     commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.loadPherogram"
113 
                     style="push">
114 
               </command>
115 
               <command
116 
                     commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.cutPherogramLeft"
117 
                     id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.cutPherogramLeft"
118 
                     name="Cut pherogram left">
119 
               </command>
120 
               <command
121 
                     commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.cutPherogramRight"
122 
                     id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.cutPherogramRight"
123 
                     style="push">
124 
               </command>
125 
               <command
126 
                     commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.reverseComplementRows"
127 
                     mnemonic="r"
128 
                     style="push">
129 
               </command>
130 
               <command
131 
                     commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.createConsensus"
132 
                     style="push">
133 
               </command>
134 
               <command
135 
                     commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.updateConsensus"
136 
                     style="push">
137 
               </command>
138 
               <visibleWhen
139 
                     checkEnabled="true">
140 
                  <with
141 
                        variable="activePartId">
142 
                     <equals
143 
                           value="eu.etaxonomy.taxeditor.molecular.AlignmentEditor">
144 
                     </equals>
145 
                  </with>
146 
               </visibleWhen>
147 
            </menu>
148 
            <menu
149 
                  label="%menu.label.PHEROGRAM_VIEW">
150 
               <command
151 
                     commandId="eu.etaxonomy.taxeditor.molecular.pherogramComponent.changeQualityOutput"
152 
                     style="push">
153 
               </command>
154 
               <command
155 
                     commandId="eu.etaxonomy.taxeditor.molecular.pherogramComponent.toggleShowProbabilities"
156 
                     style="push">
157 
               </command>
158 
               <command
159 
                     commandId="eu.etaxonomy.taxeditor.molecular.pherogramComponent.toggleShowBaseCallLines"
160 
                     style="push">
161 
               </command>
162 
               <visibleWhen
163 
                     checkEnabled="true">
164 
                  <with
165 
                        variable="activePartId">
166 
                     <equals
167 
                           value="eu.etaxonomy.taxeditor.molecular.PherogramView">
168 
                     </equals>
169 
                  </with>
170 
               </visibleWhen>
171 
            </menu>
172 
         </menuContribution>
173 
      </extension>
174 
      <extension
175 
            point="org.eclipse.ui.handlers">
176 
         <handler
177 
               class="eu.etaxonomy.taxeditor.molecular.handler.LoadPherogramHandler"
178 
               commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.loadPherogram">
179 
            <activeWhen>
180 
               <with
181 
                     variable="activePartId">
182 
                  <equals
183 
                        value="eu.etaxonomy.taxeditor.molecular.AlignmentEditor">
184 
                  </equals>
185 
               </with>
186 
            </activeWhen>
187 
         </handler>
188 
         <handler
189 
               class="eu.etaxonomy.taxeditor.molecular.handler.ToggleInsertOverwriteHandler"
190 
               commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.toggleInsertOverwrite">
191 
         </handler>
192 
         <handler
193 
               class="eu.etaxonomy.taxeditor.molecular.handler.ToggleLeftRightInsertionHandler"
194 
               commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.toggleLeftRightInsertion">
195 
         </handler>
196 
         <handler
197 
               class="eu.etaxonomy.taxeditor.molecular.handler.CutPherogramLeftHandler"
198 
               commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.cutPherogramLeft">
199 
         </handler>
200 
         <handler
201 
               class="eu.etaxonomy.taxeditor.molecular.handler.CutPherogramRightHandler"
202 
               commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.cutPherogramRight">
203 
         </handler>
204 
         <handler
205 
               class="eu.etaxonomy.taxeditor.molecular.handler.ReverseComplementHandler"
206 
               commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.reverseComplementRows">
207 
         </handler>
208 
         <handler
209 
               class="eu.etaxonomy.taxeditor.molecular.handler.CreateConsensusSequenceHandler"
210 
               commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.createConsensus">
211 
         </handler>
212 
         <handler
213 
               class="eu.etaxonomy.taxeditor.molecular.handler.UpdateConsensusSequenceHandler"
214 
               commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.updateConsensus">
215 
         </handler>
216 
         <handler
217 
               class="eu.etaxonomy.taxeditor.molecular.handler.ToggleShowPherogramProbabilitiesHandler"
218 
               commandId="eu.etaxonomy.taxeditor.molecular.pherogramComponent.toggleShowProbabilities">
219 
         </handler>
220 
         <handler
221 
               class="eu.etaxonomy.taxeditor.molecular.handler.ToggleShowPherogramBaseCallLinesHandler"
222 
               commandId="eu.etaxonomy.taxeditor.molecular.pherogramComponent.toggleShowBaseCallLines">
223 
         </handler>
224 
         <handler
225 
               class="eu.etaxonomy.taxeditor.molecular.handler.ChangePherogramQualityOutputType"
226 
               commandId="eu.etaxonomy.taxeditor.molecular.pherogramComponent.changeQualityOutput">
227 
         </handler>
228 
         <handler
229 
               class="eu.etaxonomy.taxeditor.molecular.handler.AlignmentEditorCopyHandler"
230 
               commandId="org.eclipse.ui.edit.copy">
231 
            <activeWhen>
232 
               <with
233 
                     variable="activePartId">
234 
                  <equals
235 
                        value="eu.etaxonomy.taxeditor.molecular.AlignmentEditor">
236 
                  </equals>
237 
               </with>
238 
            </activeWhen>
239 
         </handler>
240 
         <handler
241 
               class="eu.etaxonomy.taxeditor.molecular.handler.AlignmentEditorCutHandler"
242 
               commandId="org.eclipse.ui.edit.cut">
243 
            <activeWhen>
244 
               <with
245 
                     variable="activePartId">
246 
                  <equals
247 
                        value="eu.etaxonomy.taxeditor.molecular.AlignmentEditor">
248 
                  </equals>
249 
               </with>
250 
            </activeWhen>
251 
         </handler>
252 
         <handler
253 
               class="eu.etaxonomy.taxeditor.molecular.handler.AlignmentEditorPasteHandler"
254 
               commandId="org.eclipse.ui.edit.paste">
255 
            <activeWhen>
256 
               <with
257 
                     variable="activePartId">
258 
                  <equals
259 
                        value="eu.etaxonomy.taxeditor.molecular.AlignmentEditor">
260 
                  </equals>
261 
               </with>
262 
            </activeWhen>
263 
         </handler>
264 40 
      </extension>
265 41 
      <extension
266 42 
            point="org.eclipse.ui.bindings">

Also available in: Unified diff