Project

General

Profile

« Previous | Next » 

Revision 924ba372

Added by Ben Stöver over 7 years ago

ExportSingleReadAlignmentWizard now exposes whole format info object.
FileDialog added to ExportSingleReadAlignmentWizardPage.

View differences:

eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/handler/ExportSequenceToFileHandler.java
68 68 
                parameters.put(ReadWriteParameterNames.KEY_OBJECT_TRANSLATOR_FACTORY, translatorFactory);
69 69 

  		




  70
  70
  
    
                // Create writer and document adapters:


  		




  71
  
  
    
                JPhyloIOEventWriter writer = factory.getWriter(wizard.getSelectedFormat());


  		




  
  71
  
    
                JPhyloIOEventWriter writer = factory.getWriter(wizard.getSelectedFormat().getFormatID());


  		




  72
  72
  
    
                ListBasedDocumentDataAdapter document = new ListBasedDocumentDataAdapter();


  		




  73
  73
  
    
                document.getMatrices().add(new CDMSequenceMatrixAdapter(sequence, wizard.getConsensusSequenceLabel()));


  		




  74
  74
  
    

  		












  

    
      eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/io/wizard/ExportSingleReadAlignmentWizard.java
    
  





  10
  10
  
    
package eu.etaxonomy.taxeditor.molecular.io.wizard;


  		




  11
  11
  
    

  		




  12
  12
  
    

  		




  
  13
  
    
import info.bioinfweb.jphyloio.formatinfo.JPhyloIOFormatInfo;


  		




  
  14
  
    

  		




  13
  15
  
    
import java.io.File;


  		




  14
  16
  
    

  		




  15
  17
  
    
import org.eclipse.jface.wizard.Wizard;


  		




  ......




  25
  27
  
    
public class ExportSingleReadAlignmentWizard extends Wizard {


  		




  26
  28
  
    
    private ExportSingleReadAlignmentWizardPage page;


  		




  27
  29
  
    

  		




  28
  
  
    
    private String selectedFormat = null;


  		




  
  30
  
    
    private JPhyloIOFormatInfo selectedFormat = null;


  		




  29
  31
  
    
    private File selectedFile = null;


  		




  30
  32
  
    
    private String consensusSequenceLabel = null;


  		




  31
  33
  
    

  		




  ......




  56
  58
  
    
    }


  		




  57
  59
  
    

  		




  58
  60
  
    

  		




  59
  
  
    
    public String getSelectedFormat() {


  		




  
  61
  
    
    public JPhyloIOFormatInfo getSelectedFormat() {


  		




  60
  62
  
    
        return selectedFormat;


  		




  61
  63
  
    
    }


  		




  62
  64
  
    

  		












  

    
      eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/io/wizard/ExportSingleReadAlignmentWizardPage.java
    
  





  10
  10
  
    
package eu.etaxonomy.taxeditor.molecular.io.wizard;


  		




  11
  11
  
    

  		




  12
  12
  
    

  		




  
  13
  
    
import info.bioinfweb.commons.io.ContentExtensionFileFilter;


  		




  13
  14
  
    
import info.bioinfweb.jphyloio.events.type.EventContentType;


  		




  14
  15
  
    
import info.bioinfweb.jphyloio.factory.JPhyloIOReaderWriterFactory;


  		




  15
  16
  
    
import info.bioinfweb.jphyloio.formatinfo.JPhyloIOFormatInfo;


  		




  ......




  29
  30
  
    
import org.eclipse.swt.widgets.Button;


  		




  30
  31
  
    
import org.eclipse.swt.widgets.Combo;


  		




  31
  32
  
    
import org.eclipse.swt.widgets.Composite;


  		




  
  33
  
    
import org.eclipse.swt.widgets.FileDialog;


  		




  32
  34
  
    
import org.eclipse.swt.widgets.Label;


  		




  33
  35
  
    
import org.eclipse.swt.widgets.Text;


  		




  34
  36
  
    

  		




  ......




  151
  153
  
    
        fileTextField.setLayoutData(fd_text);


  		




  152
  154
  
    

  		




  153
  155
  
    
        Button btnBrowse = new Button(container, SWT.NONE);


  		




  
  156
  
    
        btnBrowse.addSelectionListener(new SelectionAdapter() {


  		




  
  157
  
    
            @Override


  		




  
  158
  
    
            public void widgetSelected(SelectionEvent e) {


  		




  
  159
  
    
                FileDialog dialog = new FileDialog(getShell(), SWT.OPEN);


  		




  
  160
  
    
                dialog.setText("Export to");  //TODO Make multi language


  		




  
  161
  
    
                //fd.setFilterPath("C:/");


  		




  
  162
  
    
                ContentExtensionFileFilter filter = getSelectedFormat().createFileFilter();


  		




  
  163
  
    
                dialog.setFilterExtensions(new String[]{filter.getExtensionsAsString()});


  		




  
  164
  
    
                dialog.setFilterNames(new String[]{filter.getDescription()});


  		




  
  165
  
    
                String selectedFile = dialog.open();


  		




  
  166
  
    
                if (selectedFile != null) {  // Otherwise selecting was canceled.


  		




  
  167
  
    
                    fileTextField.setText(selectedFile);


  		




  
  168
  
    
                }


  		




  
  169
  
    
                //TODO Add default extension, if necessary.


  		




  
  170
  
    
            }


  		




  
  171
  
    
        });


  		




  154
  172
  
    
        fd_text.right = new FormAttachment(100, -134);


  		




  155
  173
  
    
        FormData fd_btnBrowse = new FormData();


  		




  156
  174
  
    
        fd_btnBrowse.left = new FormAttachment(fileTextField, 6);


  		




  ......




  174
  192
  
    

  		




  175
  193
  
    

  		




  176
  194
  
    
    /**


  		




  177
  
  
    
     * Returns the <i>JPhyloIO</i> format ID to be used for exporting.


  		




  
  195
  
    
     * Returns the <i>JPhyloIO</i> format info object to be used for exporting.


  		




  178
  196
  
    
     *


  		




  179
  
  
    
     * @return the format ID or {@code null}, if none was yet selected


  		




  
  197
  
    
     * @return the format info or {@code null}, if none was yet selected


  		




  180
  198
  
    
     */


  		




  181
  
  
    
    public String getSelectedFormat() {


  		




  
  199
  
    
    public JPhyloIOFormatInfo getSelectedFormat() {


  		




  182
  200
  
    
        if (formatComboBox != null) {


  		




  183
  201
  
    
            int index = formatComboBox.getSelectionIndex();


  		




  184
  202
  
    
            if (index > -1) {


  		




  185
  
  
    
                return FORMATS.get(index).getFormatID();


  		




  
  203
  
    
                return FORMATS.get(index);


  		




  186
  204
  
    
            }


  		




  187
  205
  
    
        }


  		




  188
  206
  
    
        return null;


  		












Also available in:  Unified diff