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Revision 924ba372

Added by Ben Stöver over 6 years ago

ExportSingleReadAlignmentWizard now exposes whole format info object.
FileDialog added to ExportSingleReadAlignmentWizardPage.

View differences:

eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/handler/ExportSequenceToFileHandler.java
68 68 
                parameters.put(ReadWriteParameterNames.KEY_OBJECT_TRANSLATOR_FACTORY, translatorFactory);
69 69 

  		




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                // Create writer and document adapters:


  		




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                JPhyloIOEventWriter writer = factory.getWriter(wizard.getSelectedFormat());


  		




  
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                JPhyloIOEventWriter writer = factory.getWriter(wizard.getSelectedFormat().getFormatID());


  		




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                ListBasedDocumentDataAdapter document = new ListBasedDocumentDataAdapter();


  		




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                document.getMatrices().add(new CDMSequenceMatrixAdapter(sequence, wizard.getConsensusSequenceLabel()));


  		




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      eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/io/wizard/ExportSingleReadAlignmentWizard.java
    
  





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package eu.etaxonomy.taxeditor.molecular.io.wizard;


  		




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import info.bioinfweb.jphyloio.formatinfo.JPhyloIOFormatInfo;


  		




  
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import java.io.File;


  		




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import org.eclipse.jface.wizard.Wizard;


  		




  ......




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public class ExportSingleReadAlignmentWizard extends Wizard {


  		




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    private ExportSingleReadAlignmentWizardPage page;


  		




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    private String selectedFormat = null;


  		




  
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    private JPhyloIOFormatInfo selectedFormat = null;


  		




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    private File selectedFile = null;


  		




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    private String consensusSequenceLabel = null;


  		




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  ......




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    }


  		




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    public String getSelectedFormat() {


  		




  
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    public JPhyloIOFormatInfo getSelectedFormat() {


  		




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        return selectedFormat;


  		




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    }


  		




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      eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/io/wizard/ExportSingleReadAlignmentWizardPage.java
    
  





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package eu.etaxonomy.taxeditor.molecular.io.wizard;


  		




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import info.bioinfweb.commons.io.ContentExtensionFileFilter;


  		




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import info.bioinfweb.jphyloio.events.type.EventContentType;


  		




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import info.bioinfweb.jphyloio.factory.JPhyloIOReaderWriterFactory;


  		




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import info.bioinfweb.jphyloio.formatinfo.JPhyloIOFormatInfo;


  		




  ......




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import org.eclipse.swt.widgets.Button;


  		




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import org.eclipse.swt.widgets.Combo;


  		




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import org.eclipse.swt.widgets.Composite;


  		




  
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import org.eclipse.swt.widgets.FileDialog;


  		




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import org.eclipse.swt.widgets.Label;


  		




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import org.eclipse.swt.widgets.Text;


  		




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        fileTextField.setLayoutData(fd_text);


  		




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        Button btnBrowse = new Button(container, SWT.NONE);


  		




  
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        btnBrowse.addSelectionListener(new SelectionAdapter() {


  		




  
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            @Override


  		




  
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            public void widgetSelected(SelectionEvent e) {


  		




  
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                FileDialog dialog = new FileDialog(getShell(), SWT.OPEN);


  		




  
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                dialog.setText("Export to");  //TODO Make multi language


  		




  
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                //fd.setFilterPath("C:/");


  		




  
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                ContentExtensionFileFilter filter = getSelectedFormat().createFileFilter();


  		




  
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                dialog.setFilterExtensions(new String[]{filter.getExtensionsAsString()});


  		




  
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                dialog.setFilterNames(new String[]{filter.getDescription()});


  		




  
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                String selectedFile = dialog.open();


  		




  
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                if (selectedFile != null) {  // Otherwise selecting was canceled.


  		




  
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                    fileTextField.setText(selectedFile);


  		




  
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                }


  		




  
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                //TODO Add default extension, if necessary.


  		




  
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            }


  		




  
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        });


  		




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        fd_text.right = new FormAttachment(100, -134);


  		




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        FormData fd_btnBrowse = new FormData();


  		




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        fd_btnBrowse.left = new FormAttachment(fileTextField, 6);


  		




  ......




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    /**


  		




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     * Returns the <i>JPhyloIO</i> format ID to be used for exporting.


  		




  
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     * Returns the <i>JPhyloIO</i> format info object to be used for exporting.


  		




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     *


  		




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     * @return the format ID or {@code null}, if none was yet selected


  		




  
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     * @return the format info or {@code null}, if none was yet selected


  		




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     */


  		




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    public String getSelectedFormat() {


  		




  
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    public JPhyloIOFormatInfo getSelectedFormat() {


  		




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        if (formatComboBox != null) {


  		




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            int index = formatComboBox.getSelectionIndex();


  		




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            if (index > -1) {


  		




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                return FORMATS.get(index).getFormatID();


  		




  
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                return FORMATS.get(index);


  		




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            }


  		




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        }


  		




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        return null;


  		












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