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taxeditor/eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/handler @ 80e535dd

Name Size
AbstractAlignmentEditorHandler.java 1.51 KB
AbstractFocusedAlignmentAreaHandler.java 780 Bytes
AbstractPherogramComponentHandler.java 2.17 KB
AlignmentEditorCopyHandler.java 2.04 KB
AlignmentEditorCutHandler.java 1.13 KB
AlignmentEditorPasteHandler.java 5.03 KB
ChangePherogramQualityOutputType.java 913 Bytes
CreateConsensusSequenceHandler.java 1.04 KB
CutPherogramLeftHandler.java 1.23 KB
CutPherogramRightHandler.java 1.24 KB
EditSequenceHandler.java 1.96 KB
ExportSequenceToFileHandler.java 5.5 KB
HandlerTools.java 1.2 KB
LoadPherogramHandler.java 2.87 KB
ReverseComplementHandler.java 911 Bytes
ShowPherogramHandler.java 2.41 KB
ToggleInsertOverwriteHandler.java 2.28 KB
ToggleLeftRightInsertionHandler.java 2.86 KB
ToggleShowPherogramBaseCallLinesHandler.java 826 Bytes
ToggleShowPherogramProbabilitiesHandler.java 1.11 KB
UpdateConsensusSequenceHandler.java 734 Bytes
package-info.java 590 Bytes

Latest revisions

# Date Author Comment
80e535dd 11/19/2016 01:29 PM Ben Stöver

Additional strings externalized in molecular plugin.
Wizard for exporting single read alignments now warns and prompts if files are overwritten.
Bug fix: Changes in the format selection in the wizard now trigger validation again.
ExportSingleReadAlignmentWizardModel uses format list instead of map again.
ecd0d355 11/18/2016 05:01 PM Ben Stöver

Messages edited.
Support for parameters to export only single reads or only consensus implemented.
JavaDoc extended.
00d1a6ce 11/18/2016 03:43 PM Ben Stöver

Export single read alignment wizard separated into two pages.
Option to elongate sequences added.
Application information parameters of JPhyloIO set.
7417db95 11/17/2016 07:17 PM Ben Stöver

Exported single read sequences are now filled up with gaps. (Will be dependent on a parameter in the future.)
Texts in ExportSequenceToFileHandler extzernalized and translated.
661914be 11/16/2016 09:25 PM Ben Stöver

Intermediate commit in implementing wizard validation (before moving to MultiValidator).
Plug-in dependencies added to molecular.
924ba372 11/15/2016 05:09 PM Ben Stöver

ExportSingleReadAlignmentWizard now exposes whole format info object.
FileDialog added to ExportSingleReadAlignmentWizardPage.
bcb823d5 11/14/2016 07:34 PM Ben Stöver

Missing dependency Apache commons.lang added to molecular.lib.
Single read alignment export feature now makes use of wizard. (Selecting which sequences to export is not yet supported.)
9a9359ce 11/14/2016 05:34 PM Ben Stöver

New JPhyloIO package now exported by molecular.lib.
SingleReadAlignmentPredicates renamed to SingleReadAlignmentRDFXMLConstants.
Pherogram alignment shifts are now written to single read export unsing a custom ObjectTranslator implementation.
c80496ea 10/26/2016 05:31 PM Ben Stöver

Merge branch 'LibrAlign' of https://dev.e-taxonomy.eu/git/taxeditor into LibrAlign

Conflicts:

eu.etaxonomy.taxeditor.molecular.lib/.classpath

eu.etaxonomy.taxeditor/rcp.target
e7fb4208 06/04/2016 12:47 PM Ben Stöver

Debug outputs removed.
Token set added to CDMSequenceMatrixAdapter.

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