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Revision 80e535dd

Added by Ben Stöver over 7 years ago

Additional strings externalized in molecular plugin.
Wizard for exporting single read alignments now warns and prompts if files are overwritten.
Bug fix: Changes in the format selection in the wizard now trigger validation again.
ExportSingleReadAlignmentWizardModel uses format list instead of map again.

View differences:

eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/io/wizard/ExportSingleReadAlignmentWizardModel.java
14 14 
import info.bioinfweb.jphyloio.factory.JPhyloIOReaderWriterFactory;
15 15 
import info.bioinfweb.jphyloio.formatinfo.JPhyloIOFormatInfo;
16 16 

  		




  
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import java.util.ArrayList;


  		




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import java.util.Collections;


  		




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import java.util.Map;


  		




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import java.util.TreeMap;


  		




  
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import java.util.List;


  		




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import org.eclipse.core.databinding.observable.value.IObservableValue;


  		




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import org.eclipse.core.databinding.observable.value.WritableValue;


  		




  ......




  31
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 */


  		




  32
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public class ExportSingleReadAlignmentWizardModel {


  		




  33
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    protected static final JPhyloIOReaderWriterFactory READER_WRITER_FACTORY = new JPhyloIOReaderWriterFactory();


  		




  34
  
  
    
    protected static final Map<String, JPhyloIOFormatInfo> FORMAT_NAMES_TO_INFO_MAP = createFormatInfoList();


  		




  
  34
  
    
    protected static final List<JPhyloIOFormatInfo> FORMATS = createFormatInfoList();


  		




  35
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  36
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  37
  
  
    
    private IObservableValue formatInfo = new WritableValue(null, String.class);


  		




  
  37
  
    
    private IObservableValue formatInfo = new WritableValue(0, Integer.class);


  		




  38
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    private IObservableValue fileName = new WritableValue(null, String.class);


  		




  39
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    private IObservableValue exportSingleReads = new WritableValue(true, Boolean.class);


  		




  40
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    private IObservableValue exportConsensusSequence = new WritableValue(true, Boolean.class);


  		




  ......




  43
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    private IObservableValue useGapToken = new WritableValue(true, Boolean.class);


  		




  44
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  45
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    private static Map<String, JPhyloIOFormatInfo> createFormatInfoList() {


  		




  47
  
  
    
        Map<String, JPhyloIOFormatInfo> result = new TreeMap<String, JPhyloIOFormatInfo>();


  		




  
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    private static List<JPhyloIOFormatInfo> createFormatInfoList() {


  		




  
  47
  
    
        List<JPhyloIOFormatInfo> result = new ArrayList<JPhyloIOFormatInfo>();


  		




  48
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        for (String formatID : READER_WRITER_FACTORY.getFormatIDsSet()) {


  		




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            JPhyloIOFormatInfo info = READER_WRITER_FACTORY.getFormatInfo(formatID);


  		




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            if (info.isElementModeled(EventContentType.ALIGNMENT, false)) {  // Check if the current format allows to write alignments.


  		




  51
  
  
    
                result.put(info.getFormatName(), info);


  		




  
  51
  
    
                result.add(info);


  		




  52
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            }


  		




  53
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        }


  		




  54
  
  
    
        return Collections.unmodifiableMap(result);


  		




  
  54
  
    
        return Collections.unmodifiableList(result);


  		




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    }


  		




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  ......




  66
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     * @return the format info


  		




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     */


  		




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    public JPhyloIOFormatInfo getFormatInfo() {


  		




  69
  
  
    
        return FORMAT_NAMES_TO_INFO_MAP.get(formatInfo.getValue());


  		




  
  69
  
    
        return FORMATS.get((Integer)formatInfo.getValue());


  		




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    }


  		




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  ......




  133
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    protected IObservableValue getUseGapTokenObservable() {


  		




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        return useGapToken;


  		




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    }


  		




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}


  		












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