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<project>

  <modelVersion>4.0.0</modelVersion>

  <groupId>eu.etaxonomy.taxeditor</groupId>

  <artifactId>eu.etaxonomy.taxeditor.molecular.lib</artifactId>

  <packaging>eclipse-plugin</packaging>

  <parent>

    <groupId>eu.etaxonomy</groupId>

    <artifactId>taxeditor-parent</artifactId>

    <version>5.29.0-SNAPSHOT</version>

  </parent>

  <name>Molecular Library Dependencies Bundle</name>

  <description>Plugin containing all the library dependencies</description>

  <build>

    <plugins>

      <plugin>

        <groupId>org.apache.maven.plugins</groupId>

        <artifactId>maven-dependency-plugin</artifactId>

        <version>3.2.0</version>

        <executions>

          <execution>

            <id>copy-dependencies</id>

            <phase>validate</phase>

            <goals>

              <goal>copy-dependencies</goal>

            </goals>

            <configuration>

              <includeArtifactIds>libralign-core, libralign-swt, libralign-biojava1, libralign-io, 

                bioinfweb-commons-java-swt, bioinfweb-commons-java-core,

                bioinfweb-commons-java-bio, bioinfweb-commons-java-swing,

                tic-core, core, sequencing, 

                tic-swt, jphyloio-core, owlapi-xmlutils, 

                commons-lang3, commons-collections4, commons-beanutils</includeArtifactIds>

              <outputDirectory>lib</outputDirectory>

              <overWriteReleases>true</overWriteReleases>

              <overWriteSnapshots>true</overWriteSnapshots>

              <excludeTransitive>true</excludeTransitive>

            </configuration>

          </execution>

          <!-- <execution> -->

          <!-- <id>copy-dependencies-sources</id> -->

          <!-- <phase>validate</phase> -->

          <!-- <goals> -->

          <!-- <goal>copy-dependencies</goal> -->

          <!-- </goals> -->

          <!-- <configuration> -->

          <!-- <classifier>sources</classifier> -->

          <!-- <includeArtifactIds>cdmlib-commons,cdmlib-model,cdmlib-api,cdmlib-persistence,cdmlib-remote,cdmlib-print,cdmlib-services,cdmlib-ext,cdmlib-io</includeArtifactIds> -->

          <!-- <outputDirectory>lib</outputDirectory> -->

          <!-- <overWriteReleases>true</overWriteReleases> -->

          <!-- <overWriteSnapshots>true</overWriteSnapshots> -->

          <!-- <excludeTransitive>true</excludeTransitive> -->

          <!-- <failOnMissingClassifierArtifact>false</failOnMissingClassifierArtifact> -->

          <!-- </configuration> -->

          <!-- </execution> -->

        </executions>

      </plugin>

      <plugin>

        <groupId>org.apache.maven.plugins</groupId>

        <artifactId>maven-antrun-plugin</artifactId>

        <executions>

          <execution>

            <id>remove-existing-jars</id>

            <phase>clean</phase>

            <goals>

              <goal>run</goal>

            </goals>

            <configuration>

              <target>

                <echo>Remove all jars</echo>

                <delete>

                  <fileset dir="./lib" includes="*" />

                </delete>

              </target>

            </configuration>

          </execution>

          <!-- The following should not be necessary anymore. -->

          <execution>

            <id>update-snapshot-jar-names</id>

            <phase>validate</phase>

            <goals>

              <goal>run</goal>

            </goals>

            <configuration>

              <target>

                <echo>Update jars to SNAPSHOT when build with

                  timestamp</echo>

                <move todir="./lib">

                  <fileset dir="./lib" />

                  <mapper type="regexp" from="(^bioinfweb\-.*\-[0-9]-)[0-9.-]+(\.jar)" to="\1SNAPSHOT\2" />

                </move>

                <move todir="./lib">

                  <fileset dir="./lib" />

                  <mapper type="regexp" from="(^libralign\-.*\-[0-9]-)[0-9.-]+(\.jar)" to="\1SNAPSHOT\2" />

                </move>

                <move todir="./lib">

                  <fileset dir="./lib" />

                  <mapper type="regexp" from="(^tic\-.*\-[0-9]-)[0-9.-]+(\.jar)" to="\1SNAPSHOT\2" />

                </move>

                <move todir="./lib">

                  <fileset dir="./lib" />

                  <mapper type="regexp" from="(^jphyloio\-.*\-[0-9]-)[0-9.-]+(\.jar)" to="\1SNAPSHOT\2" />

                </move>

              </target>

            </configuration>

          </execution>

        </executions>

      </plugin>

    </plugins>

  </build>

  <dependencies>

    <!-- Apache commons -->

    <dependency>

        <groupId>org.apache.commons</groupId>

        <artifactId>commons-lang3</artifactId>

        <version>3.12.0</version>

    </dependency>

    <dependency>

      <groupId>org.apache.commons</groupId>

      <artifactId>commons-collections4</artifactId>

      <version>4.1</version>

    </dependency>

    <dependency>

      <groupId>commons-beanutils</groupId>

      <artifactId>commons-beanutils</artifactId>

      <version>1.9.4</version>

    </dependency>

    <!-- bioinfweb.commons -->

    <dependency>

      <groupId>info.bioinfweb.commons.java</groupId>

      <artifactId>bioinfweb-commons-java-core</artifactId>

      <version>2.2.0</version>

    </dependency>

    <dependency>

      <groupId>info.bioinfweb.commons.java</groupId>

      <artifactId>bioinfweb-commons-java-swt</artifactId>

      <version>2.0.0</version>

    </dependency>

    <dependency>

      <groupId>info.bioinfweb.commons.java</groupId>

      <artifactId>bioinfweb-commons-java-bio</artifactId>

      <version>2.0.0</version>

    </dependency>

    <dependency>

      <groupId>info.bioinfweb.commons.java</groupId>

      <artifactId>bioinfweb-commons-java-swing</artifactId>

      <version>2.2.0</version>

    </dependency>

    <!-- TIC -->

    <dependency>

      <groupId>info.bioinfweb.tic</groupId>

      <artifactId>tic-core</artifactId>

      <version>2.0.0</version>

    </dependency>

    <dependency>

      <groupId>info.bioinfweb.tic</groupId>

      <artifactId>tic-swt</artifactId>

      <version>2.0.0</version>

    </dependency>

    <!-- BioJava -->

    <dependency>

      <groupId>org.biojava</groupId>

      <artifactId>core</artifactId>

      <version>1.9.2</version>

    </dependency>

    <dependency>

      <groupId>org.biojava</groupId>

      <artifactId>sequencing</artifactId>

      <version>1.9.2</version>

    </dependency>

    <!-- LibrAlign -->

    <dependency>

      <groupId>info.bioinfweb.libralign</groupId>

      <artifactId>libralign-core</artifactId>

      <version>0.4.0</version>

    </dependency>

    <dependency>

      <groupId>info.bioinfweb.libralign</groupId>

      <artifactId>libralign-swt</artifactId>

      <version>0.4.0</version>

    </dependency>

    <dependency>

      <groupId>info.bioinfweb.libralign</groupId>

      <artifactId>libralign-biojava1</artifactId>

      <version>0.4.0</version>

    </dependency>

    <dependency>

      <groupId>info.bioinfweb.libralign</groupId>

      <artifactId>libralign-io</artifactId>

      <version>0.4.0</version>

    </dependency>

    <!-- JPhyloIO -->

    <dependency>

      <groupId>info.bioinfweb.jphyloio</groupId>

      <artifactId>jphyloio-core</artifactId>

      <version>0.3.0</version>

    </dependency>

    <dependency>

      <groupId>info.bioinfweb.thirdparty.owlapi</groupId>

      <artifactId>owlapi-xmlutils</artifactId>

      <version>4.1.4</version>

    </dependency>

  </dependencies>

  <repositories>

    <repository>

      <id>bioinfweb-maven-repo</id>

      <name>bioinfweb repository</name>

      <url>http://bioinfweb.info/MavenRepository/</url>

    </repository>

    <!-- <repository>

      <id>central-maven-repo</id>

      <name>Maven Central</name>

      <url>http://central.maven.org/maven2/</url>

    </repository> -->

  </repositories>

</project>