Revision 6d065581
Added by Patrick Plitzner over 9 years ago
- added 3 non-editable URI text fields for DNA information
| eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occurrence/dna/SequenceGeneralDetailElement.java | ||
|---|---|---|
| 35 | 35 |
private NumberWithLabelElement textConsensusSequenceLength; |
| 36 | 36 |
private TextWithLabelElement textBarcodeSequence; |
| 37 | 37 |
private TextWithLabelElement textGeneticAccessNo; |
| 38 |
private UriWithLabelElement textNCBIUri; |
|
| 39 |
private UriWithLabelElement textENAUri; |
|
| 40 |
private UriWithLabelElement textDDBJUri; |
|
| 38 | 41 |
private TextWithLabelElement textBoldProcessID; |
| 39 | 42 |
private UriWithLabelElement textBoldUri; |
| 40 | 43 |
|
| ... | ... | |
| 56 | 59 |
@Override |
| 57 | 60 |
protected void createControls(ICdmFormElement formElement, Sequence entity, int style) {
|
| 58 | 61 |
comboMarker = formFactory.createDefinedTermComboElement(TermType.DnaMarker, formElement, "DNA Marker", entity.getDnaMarker(), style); |
| 59 |
textConsensusSequence = formFactory.createTextWithLabelElement(formElement, "Consensus Sequence 5'->3'", entity.getConsensusSequence().getString(), style); |
|
| 60 |
textConsensusSequenceLength = formFactory.createNumberTextWithLabelElement(formElement, "Consensus Seq. Length", entity.getConsensusSequence().getLength(), style); |
|
| 61 |
((Text) textConsensusSequenceLength.getMainControl()).setEditable(false); |
|
| 62 |
// textConsensusSequence = formFactory.createTextWithLabelElement(formElement, "Consensus Sequence 5'->3'", entity.getConsensusSequence().getString(), style);
|
|
| 63 |
// textConsensusSequenceLength = formFactory.createNumberTextWithLabelElement(formElement, "Consensus Seq. Length", entity.getConsensusSequence().getLength(), style);
|
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| 64 |
// ((Text) textConsensusSequenceLength.getMainControl()).setEditable(false);
|
|
| 62 | 65 |
textBarcodeSequence = formFactory.createTextWithLabelElement(formElement, "Barcode Sequence 5'->3'", entity.getBarcodeSequencePart()==null?"":entity.getBarcodeSequencePart().getString(), style); |
| 63 | 66 |
|
| 64 | 67 |
textGeneticAccessNo = formFactory.createTextWithLabelElement(formElement, "Genetic Acc. No.", entity.getGeneticAccessionNumber(), style); |
| 68 |
textNCBIUri = formFactory.createUriWithLabelElement(formElement, "NCBI URI", entity.getGenBankUri(), style); |
|
| 69 |
((Text) textNCBIUri.getMainControl()).setEditable(false); |
|
| 70 |
textENAUri = formFactory.createUriWithLabelElement(formElement, "ENA URI", entity.getEmblUri(), style); |
|
| 71 |
((Text) textENAUri.getMainControl()).setEditable(false); |
|
| 72 |
textDDBJUri = formFactory.createUriWithLabelElement(formElement, "DDBJ URI", entity.getDdbjUri(), style); |
|
| 73 |
((Text) textDDBJUri.getMainControl()).setEditable(false); |
|
| 65 | 74 |
textBoldProcessID = formFactory.createTextWithLabelElement(formElement, "BOLD Process ID", entity.getBoldProcessId(), style); |
| 66 | 75 |
textBoldUri = formFactory.createUriWithLabelElement(formElement, "BOLD URI", entity.getBoldUri(), style); |
| 67 | 76 |
((Text) textBoldUri.getMainControl()).setEditable(false); |
| 68 |
|
|
| 77 |
((Text) textBoldUri.getMainControl()).setToolTipText("Query BOLD");
|
|
| 69 | 78 |
} |
| 70 | 79 |
|
| 71 | 80 |
/* |
| ... | ... | |
| 89 | 98 |
getEntity().setConsensusSequence(consensusSequence); |
| 90 | 99 |
textConsensusSequenceLength.setNumber(consensusSequence.getLength()); |
| 91 | 100 |
} |
| 92 |
else if(eventSource==textConsensusSequenceLength){
|
|
| 93 |
// this is a derived value and should not be edited |
|
| 94 |
} |
|
| 95 | 101 |
else if(eventSource==textBarcodeSequence){
|
| 96 | 102 |
SequenceString barcodeSequencePart = getEntity().getBarcodeSequencePart(); |
| 97 | 103 |
if(barcodeSequencePart==null){
|
| ... | ... | |
| 102 | 108 |
} |
| 103 | 109 |
else if(eventSource==textGeneticAccessNo){
|
| 104 | 110 |
getEntity().setGeneticAccessionNumber(textGeneticAccessNo.getText()); |
| 111 |
if(textGeneticAccessNo.getText()!=null && !textGeneticAccessNo.getText().isEmpty()){
|
|
| 112 |
textNCBIUri.setUri(getEntity().getGenBankUri()); |
|
| 113 |
textENAUri.setUri(getEntity().getEmblUri()); |
|
| 114 |
textDDBJUri.setUri(getEntity().getDdbjUri()); |
|
| 115 |
} |
|
| 116 |
else{
|
|
| 117 |
textNCBIUri.setText("");
|
|
| 118 |
textENAUri.setText("");
|
|
| 119 |
textDDBJUri.setText("");
|
|
| 120 |
} |
|
| 105 | 121 |
} |
| 106 | 122 |
else if(eventSource==textBoldProcessID){
|
| 107 | 123 |
getEntity().setBoldProcessId(textBoldProcessID.getText()); |
| ... | ... | |
| 112 | 128 |
textBoldUri.setText("");
|
| 113 | 129 |
} |
| 114 | 130 |
} |
| 115 |
else if(eventSource==textBoldUri){
|
|
| 116 |
//cannot be set because it is generated from the genetic access number and a base URI |
|
| 117 |
} |
|
| 118 | 131 |
} |
| 119 | 132 |
|
| 120 | 133 |
} |
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