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// $Id$
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/**
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* Copyright (C) 2014 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.taxeditor.session;
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import java.util.ArrayList;
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import java.util.Iterator;
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import java.util.List;
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import java.util.Map;
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import java.util.Set;
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import java.util.UUID;
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import org.apache.log4j.Logger;
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import org.hibernate.collection.spi.PersistentCollection;
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import org.junit.Assert;
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import org.junit.BeforeClass;
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import org.junit.Ignore;
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import org.junit.Test;
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import org.unitils.dbunit.annotation.DataSet;
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import eu.etaxonomy.cdm.api.application.CdmApplicationState;
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import eu.etaxonomy.cdm.api.service.ICommonService;
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import eu.etaxonomy.cdm.api.service.IPolytomousKeyNodeService;
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import eu.etaxonomy.cdm.api.service.IPolytomousKeyService;
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import eu.etaxonomy.cdm.api.service.ITaxonService;
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import eu.etaxonomy.cdm.api.service.ITermService;
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import eu.etaxonomy.cdm.api.service.IUserService;
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import eu.etaxonomy.cdm.api.service.IVocabularyService;
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import eu.etaxonomy.cdm.model.agent.AgentBase;
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import eu.etaxonomy.cdm.model.agent.Person;
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import eu.etaxonomy.cdm.model.common.CdmBase;
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import eu.etaxonomy.cdm.model.common.Credit;
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import eu.etaxonomy.cdm.model.common.DefinedTermBase;
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import eu.etaxonomy.cdm.model.common.Extension;
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import eu.etaxonomy.cdm.model.common.IdentifiableSource;
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import eu.etaxonomy.cdm.model.common.Language;
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import eu.etaxonomy.cdm.model.common.LanguageString;
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import eu.etaxonomy.cdm.model.common.TermType;
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import eu.etaxonomy.cdm.model.common.TermVocabulary;
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import eu.etaxonomy.cdm.model.description.KeyStatement;
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import eu.etaxonomy.cdm.model.description.PolytomousKey;
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import eu.etaxonomy.cdm.model.description.PolytomousKeyNode;
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import eu.etaxonomy.cdm.model.media.Rights;
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import eu.etaxonomy.cdm.model.taxon.Taxon;
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import eu.etaxonomy.taxeditor.httpinvoker.RemotingSessionAwareTest;
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/**
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* @author cmathew
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* @date 7 Oct 2014
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*
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*/
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@DataSet
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public class CdmEntitySessionAwareTest extends RemotingSessionAwareTest {
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private static final Logger logger = Logger.getLogger(CdmEntitySessionAwareTest.class);
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UUID polytomousKeyUuid = UUID.fromString("0d53ba20-7de4-4baa-bd8a-401048447d66");
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UUID subKeyUuid = UUID.fromString("9d8bf4f6-a70a-4b80-8556-2ccfb436ff01");
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//UUID polytomousKeyUuid = UUID.fromString("bab66772-2c83-428a-bb6d-655d12ac6097");
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UUID taxon1Uuid = UUID.fromString("2b336df7-29e8-4f79-985f-66502739d22f");
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UUID personUuid = UUID.fromString("945d08f2-eb92-45b6-9252-6275ea6d338b");
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IPolytomousKeyService polytomousKeyService = getRemoteApplicationController().getPolytomousKeyService();
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IPolytomousKeyNodeService polytomousKeyNodeService = getRemoteApplicationController().getPolytomousKeyNodeService();
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ICommonService commonService = getRemoteApplicationController().getCommonService();
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ITaxonService taxonService = getRemoteApplicationController().getTaxonService();
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IVocabularyService vocabularyService = getRemoteApplicationController().getVocabularyService();
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ITermService termService = getRemoteApplicationController().getTermService();
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IUserService userService = getRemoteApplicationController().getUserService();
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//Language english = Language.getLanguageFromUuid(Language.uuidEnglish);
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@BeforeClass
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public static void initializePolytomousKeyTest() {
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}
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@Test
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public void readAllPolytomousKeys() {
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List<PolytomousKey> pKeys = polytomousKeyService.list(PolytomousKey.class, null, null, null, null);
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Iterator<PolytomousKey> pKeysItr = pKeys.iterator();
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Assert.assertEquals(pKeysItr.next().getUuid(),UUID.fromString("9d8bf4f6-a70a-4b80-8556-2ccfb436ff01"));
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Assert.assertEquals(pKeysItr.next().getUuid(),UUID.fromString("0d53ba20-7de4-4baa-bd8a-401048447d66"));
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}
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@Test
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//@DataSet("PolytomousKeyTest.readPolytmousKeyData.xml")
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public void readPolytmousKeyData() {
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PolytomousKey pKey = CdmBase.deproxy(polytomousKeyService.find(polytomousKeyUuid),PolytomousKey.class);
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Set<Taxon> taxonomicScope = pKey.getTaxonomicScope();
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Iterator<Taxon> tsItr = taxonomicScope.iterator();
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Taxon taxon = tsItr.next();
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Assert.assertEquals("Achillea sec. Cyprus", taxon.getTitleCache());
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Assert.assertEquals(tsItr.hasNext(), false);
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List<Credit> credits = pKey.getCredits();
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AgentBase agent = credits.get(0).getAgent();
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Assert.assertEquals(agent.getId(),4809);
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Assert.assertEquals(agent.getTitleCache(),"R. A. Graham");
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Assert.assertEquals(credits.get(0).getText(),"Credits Text Test");
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Set<Extension> exts = pKey.getExtensions();
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Iterator<Extension> extItr = exts.iterator();
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Extension ext = extItr.next();
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Assert.assertEquals(ext.getValue(), "http://test.com");
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Set<Rights> rights = pKey.getRights();
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Iterator<Rights> rightsItr = rights.iterator();
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Rights right = rightsItr.next();
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Assert.assertEquals(right.getText(),"Rights Text Test");
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Set<IdentifiableSource> sources = pKey.getSources();
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Iterator<IdentifiableSource> sourcesItr = sources.iterator();
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IdentifiableSource source = sourcesItr.next();
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Assert.assertEquals(source.getId(), 23710);
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source = sourcesItr.next();
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Assert.assertEquals(source.getId(), 23711);
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// TO DO : Added tests for Annotations , Markers
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}
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@Test
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public void readPolytomousKeyDataFromNodes() {
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PolytomousKey pKey = CdmBase.deproxy(polytomousKeyService.find(polytomousKeyUuid),PolytomousKey.class);
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PolytomousKeyNode rootNode = pKey.getRoot();
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Assert.assertEquals(rootNode.getId(), 2750);
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Assert.assertEquals(rootNode.getChildAt(0).getId(), 2751);
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Assert.assertEquals(rootNode.getChildAt(0).getParent().getId(), rootNode.getId());
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Assert.assertEquals(rootNode.getKey().getId(), pKey.getId());
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Integer sortIndex = (Integer)getFieldValueViaReflection(rootNode.getChildAt(0), "sortIndex");
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Assert.assertEquals(sortIndex, new Integer(0));
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String statement = "Capitula without ligulate ray-florets; leaves entire or subentire";
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Assert.assertEquals(rootNode.getChildAt(0).getStatement().getLabelText(Language.ENGLISH()), statement);
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Assert.assertEquals(rootNode.getChildAt(1).getId(), 2753);
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Assert.assertEquals(rootNode.getChildAt(1).getParent().getId(), rootNode.getId());
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Assert.assertEquals(rootNode.getChildAt(1).getKey().getId(), pKey.getId());
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sortIndex = (Integer)getFieldValueViaReflection(rootNode.getChildAt(1), "sortIndex");
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Assert.assertEquals(sortIndex, new Integer(1));
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statement = "Capitula with ligulate ray-florets; leaves pinnatisect";
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Assert.assertEquals(rootNode.getChildAt(1).getStatement().getLabelText(Language.ENGLISH()), statement);
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Assert.assertEquals(rootNode.getChildAt(1).getChildAt(0).getId(), 2754);
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Assert.assertEquals(rootNode.getChildAt(1).getChildAt(0).getParent().getId(), rootNode.getChildAt(1).getId());
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Assert.assertEquals(rootNode.getChildAt(1).getChildAt(0).getKey().getId(), pKey.getId());
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sortIndex = (Integer)getFieldValueViaReflection(rootNode.getChildAt(1).getChildAt(0), "sortIndex");
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Assert.assertEquals(sortIndex, new Integer(0));
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statement = "Ray-florets yellow";
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Assert.assertEquals(rootNode.getChildAt(1).getChildAt(0).getStatement().getLabelText(Language.ENGLISH()), statement);
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Assert.assertEquals(rootNode.getChildAt(1).getChildAt(0).getChildAt(0).getTaxon().getTitleCache(), "Achillea arabica Kotschy sec. Cyprus");
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}
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@Test
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public void addGrandChildPolytomousKeyNode() {
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PolytomousKey pKey = CdmBase.deproxy(polytomousKeyService.find(polytomousKeyUuid),PolytomousKey.class);
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PolytomousKeyNode rootChildNode = pKey.getRoot().getChildAt(0);
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PolytomousKeyNode grandChildNode = PolytomousKeyNode.NewInstance();
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rootChildNode.addChild(grandChildNode);
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polytomousKeyService.merge(pKey, true);
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grandChildNode = pKey.getRoot().getChildAt(0).getChildAt(0);
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Assert.assertTrue(0 != grandChildNode.getId());
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KeyStatement ks = KeyStatement.NewInstance("test");
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grandChildNode.setStatement(ks);
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polytomousKeyService.merge(pKey, true);
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//grandChildNode = pKey.getRoot().getChildAt(0).getChildAt(0);
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//KeyStatement ks = grandChildNode.getStatement();
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Assert.assertTrue(0 != ks.getId());
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}
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@Test
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public void addGreatGrandChildPolytomousKeyNode() {
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PolytomousKey pKey = CdmBase.deproxy(polytomousKeyService.find(polytomousKeyUuid),PolytomousKey.class);
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PolytomousKeyNode rootChildNode = pKey.getRoot().getChildAt(0);
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PolytomousKeyNode grandChildNode = PolytomousKeyNode.NewInstance();
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rootChildNode.addChild(grandChildNode);
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polytomousKeyNodeService.merge(grandChildNode);
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Assert.assertFalse(pKey.getRoot().getChildAt(0).getChildAt(0).getId() == 0);
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}
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@Test
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public void savePolytomousKeyNodeData() {
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PolytomousKey pkey = CdmBase.deproxy(polytomousKeyService.find(polytomousKeyUuid),PolytomousKey.class);
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PolytomousKeyNode pkeynode = pkey.getRoot();
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String newQuestion = "New Question";
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String newStatement = "New Statement";
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Assert.assertEquals("Question 1",pkeynode.getQuestion().getLabel().get(Language.ENGLISH()).getText());
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for(PolytomousKeyNode node : pkeynode.getChildren()) {
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node.setQuestion(null);
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node.setStatement(null);
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}
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//FIXME:Remoting Add tests for feature after fixing problem
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//Feature feature = pkeynode.getFeature();
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//Assert.assertEquals(feature.getTitleCache(),"Systematics");
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//pkeynode.setFeature(null);
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Assert.assertEquals(pkeynode.getChildAt(0).getModifyingText().get(Language.ENGLISH()).getText(),"Modifying Text 1a");
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String modifyingText = "Modifying Text 1a updated";
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//pkeynode.getChildAt(0).putModifyingText(Language.ENGLISH(), modifyingText);
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Assert.assertEquals(pkeynode.getChildAt(0).getSubkey().getId(),751);
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Assert.assertEquals("Asphodeline", pkeynode.getChildAt(0).getSubkey().getTitleCache());
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Assert.assertNull(pkeynode.getChildAt(1).getTaxon());
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Taxon taxon = CdmBase.deproxy(taxonService.find(taxon1Uuid),Taxon.class);
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pkeynode.getChildAt(1).setTaxon(taxon);
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polytomousKeyService.merge(pkey);
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pkey = CdmBase.deproxy(polytomousKeyService.find(polytomousKeyUuid),PolytomousKey.class);
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pkeynode = pkey.getRoot();
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for(PolytomousKeyNode node : pkeynode.getChildren()) {
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Assert.assertNull(node.getQuestion());
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node.setQuestion(KeyStatement.NewInstance(Language.ENGLISH(),newQuestion));
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Assert.assertNull(node.getStatement());
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node.setStatement(KeyStatement.NewInstance(Language.ENGLISH(),newStatement));
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}
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Assert.assertEquals(pkeynode.getChildAt(1).getTaxon(), taxon);
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polytomousKeyService.merge(pkey);
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pkey = CdmBase.deproxy(polytomousKeyService.find(polytomousKeyUuid),PolytomousKey.class);
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pkeynode = pkey.getRoot();
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for(PolytomousKeyNode node : pkeynode.getChildren()) {
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Assert.assertNotNull(node.getQuestion());
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Map<Language, LanguageString> label = node.getQuestion().getLabel();
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Assert.assertEquals(newQuestion, label.get(Language.ENGLISH()).getText());
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Assert.assertNotNull(node.getStatement());
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Assert.assertEquals(newStatement, node.getStatement().getLabel(Language.ENGLISH()).getText());
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}
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//Assert.assertEquals(pkeynode.getFeature().getId(), feature.getId());
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}
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@Test
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public void savePolytomousKeyNodeDataWithSameSubKey() {
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PolytomousKey pkey = CdmBase.deproxy(polytomousKeyService.find(polytomousKeyUuid),PolytomousKey.class);
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PolytomousKeyNode pkeynode = pkey.getRoot();
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PolytomousKey subkey1 = CdmBase.deproxy(pkeynode.getChildAt(0).getSubkey(), PolytomousKey.class);
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String subkey1title = subkey1.getTitleCache();
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subkey1.setTitleCache(subkey1title + "test", true);
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PolytomousKey subkey2 = CdmBase.deproxy(pkeynode.getChildAt(1).getChildAt(0).getSubkey(), PolytomousKey.class);
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String subkey2title = subkey2.getTitleCache();
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subkey2.setTitleCache(subkey2title + "test", true);
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Assert.assertSame(subkey1, subkey2);
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polytomousKeyService.merge(pkey);
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}
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@Test
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public void savePolytomousKeyNodeDataWithSameSubKeyUsingService() {
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PolytomousKey pkey = CdmBase.deproxy(polytomousKeyService.find(polytomousKeyUuid),PolytomousKey.class);
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PolytomousKeyNode pkeynode = pkey.getRoot();
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PersistentCollection children = (PersistentCollection) pkeynode.getChildren();
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PolytomousKeyNode childNode0 = (PolytomousKeyNode)commonService.get(pkeynode.getUuid(), "children", 0);
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PolytomousKey subkey1 = CdmBase.deproxy(childNode0.getSubkey(),PolytomousKey.class);
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String subkey1title = subkey1.getTitleCache();
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subkey1.setTitleCache(subkey1title + "test", true);
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PolytomousKeyNode childNode1 = (PolytomousKeyNode)commonService.get(pkeynode.getUuid(), "children", 1);
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PolytomousKey subkey2 = CdmBase.deproxy(childNode1.getSubkey(),PolytomousKey.class);
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String subkey2title = subkey2.getTitleCache();
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subkey2.setTitleCache(subkey2title + "test", true);
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Assert.assertNotSame(childNode0, childNode1);
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Assert.assertSame(subkey1, subkey2);
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polytomousKeyService.merge(pkey);
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}
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@Test
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public void savePolytomousKeyNodeDataWithSameLanguageInLabel() {
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PolytomousKey pkey = CdmBase.deproxy(polytomousKeyService.find(polytomousKeyUuid),PolytomousKey.class);
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PolytomousKeyNode pkeynode = pkey.getRoot();
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Map<Language, LanguageString> label1 = pkeynode.getQuestion().getLabel();
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label1.size();
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Map<Language, LanguageString> label2 = pkeynode.getChildAt(0).getStatement().getLabel();
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label2.size();
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polytomousKeyService.merge(pkey);
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}
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@Test
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public void deleteSubKeyInPolytomousSubKeyWithoutInitializing() {
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PolytomousKey pKey = CdmBase.deproxy(polytomousKeyService.find(polytomousKeyUuid),PolytomousKey.class);
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PolytomousKeyNode rootNode = pKey.getRoot();
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PolytomousKeyNode child = rootNode.getChildAt(0);
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PolytomousKey subKey = child.getSubkey();
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polytomousKeyService.delete(subKey.getUuid());
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// retrieving subkey shows its null
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subKey = CdmBase.deproxy(polytomousKeyService.find(subKeyUuid),PolytomousKey.class);
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Assert.assertNull(subKey);
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pKey = CdmBase.deproxy(polytomousKeyService.find(polytomousKeyUuid),PolytomousKey.class);
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rootNode = pKey.getRoot();
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child = rootNode.getChildAt(0);
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subKey = child.getSubkey();
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// subkey will not be null, because the delete functionality of the subkey
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// does not currently delete it from a polytomous key node
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// FIXME: With the new delete functionality this should be null, shouldn't it ?
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361
|
Assert.assertNotNull(subKey);
|
362
|
}
|
363
|
|
364
|
|
365
|
@Test
|
366
|
public void deleteSubKeyInPolytomousNode() {
|
367
|
PolytomousKey pKey = CdmBase.deproxy(polytomousKeyService.find(polytomousKeyUuid),PolytomousKey.class);
|
368
|
|
369
|
|
370
|
PolytomousKeyNode rootNode = pKey.getRoot();
|
371
|
List<PolytomousKeyNode> children = rootNode.getChildren();
|
372
|
PolytomousKeyNode child = rootNode.getChildAt(0);
|
373
|
polytomousKeyNodeService.delete(child.getUuid(), true);
|
374
|
|
375
|
pKey = CdmBase.deproxy(polytomousKeyService.find(polytomousKeyUuid),PolytomousKey.class);
|
376
|
|
377
|
rootNode = pKey.getRoot();
|
378
|
children = rootNode.getChildren();
|
379
|
Assert.assertFalse(children.contains(child));
|
380
|
}
|
381
|
|
382
|
@Test
|
383
|
public void deleteSubKeyInPolytomousSubKeyAfterInitializing() {
|
384
|
PolytomousKey pKey = CdmBase.deproxy(polytomousKeyService.find(polytomousKeyUuid),PolytomousKey.class);
|
385
|
|
386
|
|
387
|
PolytomousKeyNode rootNode = pKey.getRoot();
|
388
|
PolytomousKeyNode child = rootNode.getChildAt(0);
|
389
|
PolytomousKey subKey = child.getSubkey();
|
390
|
// this call initializes the subkey
|
391
|
subKey.getRoot();
|
392
|
|
393
|
polytomousKeyService.delete(subKey);
|
394
|
|
395
|
// since subKey was initialized before the delete, it will be
|
396
|
// accesible even after the delete. This behaviour is similar
|
397
|
// to hibernate session delete where the deleted object is
|
398
|
// made transient, but not deleted from the object graph
|
399
|
|
400
|
PolytomousKeyNode subKeyRootNode = subKey.getRoot();
|
401
|
Assert.assertNotNull(subKey);
|
402
|
}
|
403
|
|
404
|
@Test
|
405
|
public void saveNewTermVocabulary() {
|
406
|
TermVocabulary termVocabulary =
|
407
|
TermVocabulary.NewInstance(TermType.Feature,
|
408
|
null,
|
409
|
"Untitled",
|
410
|
null,
|
411
|
null);
|
412
|
try {
|
413
|
List<TermVocabulary<DefinedTermBase>> vocabularies = vocabularyService.findByTermType(TermType.Feature);
|
414
|
|
415
|
for(TermVocabulary vocab : vocabularies) {
|
416
|
vocab.getTermsOrderedByLabels(Language.ENGLISH());
|
417
|
}
|
418
|
|
419
|
termVocabulary = vocabularyService.merge(termVocabulary);
|
420
|
vocabularies.add(termVocabulary);
|
421
|
termVocabulary.setLabel("Test");
|
422
|
vocabularyService.merge(new ArrayList<TermVocabulary>(vocabularies));
|
423
|
} finally {
|
424
|
vocabularyService.delete(termVocabulary);
|
425
|
}
|
426
|
}
|
427
|
|
428
|
@Ignore // should be enabled once resolution of #5066 is merged into cdmlib main branch
|
429
|
@Test
|
430
|
public void saveNewTerm() {
|
431
|
UUID vocNameFeatureUuid = UUID.fromString("fa7ca3eef-4092-49e1-beec-ed5096193e5e");
|
432
|
UUID vocFeatureUuid = UUID.fromString("b187d555-f06f-4d65-9e53-da7c93f8eaa8");
|
433
|
DefinedTermBase newTerm = TermType.Feature.getEmptyDefinedTermBase();
|
434
|
newTerm.setLabel("CreateTest");
|
435
|
|
436
|
try {
|
437
|
|
438
|
Assert.assertNotNull(newTerm);
|
439
|
TermVocabulary vocNameFeature = vocabularyService.find(vocNameFeatureUuid);
|
440
|
TermVocabulary vocFeature = vocabularyService.find(vocFeatureUuid);
|
441
|
|
442
|
List<TermVocabulary> vocs = new ArrayList<TermVocabulary>();
|
443
|
|
444
|
vocs.add(vocNameFeature);
|
445
|
vocs.add(vocFeature);
|
446
|
|
447
|
vocNameFeature.addTerm(newTerm);
|
448
|
|
449
|
vocs = vocabularyService.merge(vocs);
|
450
|
for(TermVocabulary voc : vocs) {
|
451
|
if(voc.getUuid().equals(vocNameFeatureUuid)) {
|
452
|
vocNameFeature = voc;
|
453
|
}
|
454
|
}
|
455
|
|
456
|
Assert.assertTrue(vocNameFeature.getTerms().contains(newTerm));
|
457
|
|
458
|
for(Object obj : vocNameFeature.getTerms()) {
|
459
|
DefinedTermBase dtb = (DefinedTermBase)obj;
|
460
|
if("CreateTest".equals(dtb.getLabel())) {
|
461
|
newTerm = dtb;
|
462
|
Assert.assertNotNull(dtb.getCreatedBy());
|
463
|
Assert.assertNotNull(dtb.getCreated());
|
464
|
} else {
|
465
|
Assert.assertNull(dtb.getCreatedBy());
|
466
|
}
|
467
|
}
|
468
|
newTerm.setLabel("UpdateTest");
|
469
|
newTerm = termService.merge(newTerm);
|
470
|
Assert.assertNotNull(newTerm.getUpdatedBy());
|
471
|
Assert.assertNotNull(newTerm.getUpdated());
|
472
|
|
473
|
Assert.assertNull(vocNameFeature.getCreatedBy());
|
474
|
Assert.assertNull(vocFeature.getCreatedBy());
|
475
|
} finally {
|
476
|
if(termService.find(newTerm.getUuid()) != null) {
|
477
|
termService.delete(newTerm.getUuid());
|
478
|
}
|
479
|
}
|
480
|
}
|
481
|
|
482
|
@Ignore // activate after fixing #5138
|
483
|
@Test
|
484
|
public void updatePerson() {
|
485
|
Person person = (Person) CdmApplicationState.getCurrentAppConfig().getAgentService().load(personUuid);
|
486
|
// Note : at this point the contact field in Person (AgentBase) is initialized even though no
|
487
|
// data related to the Contact class exists in the database.
|
488
|
person.setFirstname("Me");
|
489
|
CdmApplicationState.getCurrentAppConfig().getAgentService().merge(person);
|
490
|
|
491
|
}
|
492
|
|
493
|
@Ignore // activate after fixing #5138
|
494
|
@Test
|
495
|
public void createPerson() {
|
496
|
|
497
|
Person person = Person.NewInstance();
|
498
|
//person.setTitleCache("New Person", true);
|
499
|
person = (Person) CdmApplicationState.getCurrentAppConfig().getAgentService().merge(person);
|
500
|
//Note : at this point the contact field in Person (AgentBase) is set to null which is
|
501
|
// different behaviour as compared to a load call on an existing Person entity.
|
502
|
// The fact that the contact is null will lead to the all-delete-orphan error.
|
503
|
person = (Person) CdmApplicationState.getCurrentAppConfig().getAgentService().load(person.getUuid());
|
504
|
person.setFirstname("Some");
|
505
|
CdmApplicationState.getCurrentAppConfig().getAgentService().merge(person);
|
506
|
}
|
507
|
}
|