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taxeditor/eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/io @ 661914be

Name Size
  wizard
CDMPherogramAlignmentObjectTranslator.java 2.37 KB
CDMSequenceMatrixAdapter.java 11 KB
SequenceIDIterator.java 1.76 KB
SingleReadAlignmentRDFXMLConstants.java 2.93 KB

Latest revisions

# Date Author Comment
661914be 11/16/2016 09:25 PM Ben Stöver

Intermediate commit in implementing wizard validation (before moving to MultiValidator).
Plug-in dependencies added to molecular.
924ba372 11/15/2016 05:09 PM Ben Stöver

ExportSingleReadAlignmentWizard now exposes whole format info object.
FileDialog added to ExportSingleReadAlignmentWizardPage.
bcb823d5 11/14/2016 07:34 PM Ben Stöver

Missing dependency Apache commons.lang added to molecular.lib.
Single read alignment export feature now makes use of wizard. (Selecting which sequences to export is not yet supported.)
9a9359ce 11/14/2016 05:34 PM Ben Stöver

New JPhyloIO package now exported by molecular.lib.
SingleReadAlignmentPredicates renamed to SingleReadAlignmentRDFXMLConstants.
Pherogram alignment shifts are now written to single read export unsing a custom ObjectTranslator implementation.
0608d733 11/13/2016 06:24 PM Ben Stöver

ExportSingleReadAlignmentWizardPage now allows to select output file and
format.
4f39e7d4 10/27/2016 07:31 PM Ben Stöver

CDMSequenceMatrixAdapter now exports sequence metadata.
95857d53 10/27/2016 03:55 PM Ben Stöver

Bug fix: CDMSequenceMatrixAdapter now does not create CharacterSetIntervalEvents if the alignment has no columns.
c37c8506 10/22/2016 02:36 PM Ben Stöver

Plugin molecular.lib refactored to use direct project dependencies. This should not be merged into trunk, since this is only for development state. (Currently the trunk is anyway already using different Maven dependencies.)
Adjustments to recent changes in JPhyloIO.
bc036167 06/23/2016 05:33 PM Ben Stöver

Bug fix: CDMSequenceMatrixAdapter now defines valid columns for its character set.
Draft for ExportSingleReadAlignmentWizard added.
cda3a81a 06/23/2016 03:30 PM Ben Stöver

Molecular plugin adjusted to recent changes in JPhyloIO.

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