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Revision 661914be

Added by Ben Stöver over 7 years ago

Intermediate commit in implementing wizard validation (before moving to MultiValidator).
Plug-in dependencies added to molecular.

View differences:

eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/handler/ExportSequenceToFileHandler.java
17 17 
import info.bioinfweb.jphyloio.factory.JPhyloIOReaderWriterFactory;
18 18 
import info.bioinfweb.jphyloio.objecttranslation.ObjectTranslatorFactory;
19 19 

  		




  
  20
  
    
import java.io.File;


  		




  20
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import java.io.IOException;


  		




  21
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import org.eclipse.core.commands.AbstractHandler;


  		




  ......




  68
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                parameters.put(ReadWriteParameterNames.KEY_OBJECT_TRANSLATOR_FACTORY, translatorFactory);


  		




  69
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                // Create writer and document adapters:


  		




  71
  
  
    
                JPhyloIOEventWriter writer = factory.getWriter(wizard.getSelectedFormat().getFormatID());


  		




  
  72
  
    
                JPhyloIOEventWriter writer = factory.getWriter(wizard.getModel().getFormatInfo().getFormatID());


  		




  72
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                ListBasedDocumentDataAdapter document = new ListBasedDocumentDataAdapter();


  		




  73
  
  
    
                document.getMatrices().add(new CDMSequenceMatrixAdapter(sequence, wizard.getConsensusSequenceLabel()));


  		




  
  74
  
    
                document.getMatrices().add(new CDMSequenceMatrixAdapter(sequence, wizard.getModel().getConsensusSequenceLabel()));


  		




  74
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                // Write document:


  		




  
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                File file = new File(wizard.getModel().getFileName());


  		




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                try {


  		




  77
  
  
    
                    writer.writeDocument(document, wizard.getSelectedFile(), parameters);


  		




  
  79
  
    
                    writer.writeDocument(document, file, parameters);


  		




  78
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                }


  		




  79
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                catch (IOException e) {


  		




  80
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                    e.printStackTrace();


  		




  81
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                    MessagingUtils.errorDialog("IO error", this,


  		




  82
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                            "An error occured when trying to export a consensus sequence alignment to the file \"" +


  		




  83
  
  
    
                            wizard.getSelectedFile().getAbsolutePath() + "\".", TaxeditorMolecularPlugin.PLUGIN_ID, e, false);  //TODO set pluginID


  		




  
  85
  
    
                            file.getAbsolutePath() + "\".", TaxeditorMolecularPlugin.PLUGIN_ID, e, false);  //TODO set pluginID


  		




  84
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                            //TODO Use multi language error message.


  		




  85
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                }


  		




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            }


  		












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