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/**
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* Copyright (C) 2018 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.taxeditor.editor.descriptiveDataSet.matrix;
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import java.util.ArrayList;
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import java.util.Collection;
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import java.util.List;
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import java.util.Map;
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import java.util.UUID;
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import org.eclipse.core.runtime.ICoreRunnable;
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import org.eclipse.core.runtime.IProgressMonitor;
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import org.eclipse.core.runtime.IStatus;
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import org.eclipse.core.runtime.Status;
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import org.eclipse.core.runtime.SubMonitor;
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import org.eclipse.core.runtime.jobs.IJobChangeEvent;
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import org.eclipse.core.runtime.jobs.Job;
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import org.eclipse.core.runtime.jobs.JobChangeAdapter;
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import org.eclipse.jface.layout.GridDataFactory;
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import org.eclipse.jface.window.Window;
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import org.eclipse.swt.SWT;
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import org.eclipse.swt.events.SelectionAdapter;
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import org.eclipse.swt.events.SelectionEvent;
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import org.eclipse.swt.layout.RowLayout;
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import org.eclipse.swt.widgets.Button;
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import org.eclipse.swt.widgets.Composite;
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import eu.etaxonomy.cdm.api.application.CdmApplicationState;
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import eu.etaxonomy.cdm.api.service.IDescriptiveDataSetService;
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import eu.etaxonomy.cdm.api.service.IPolytomousKeyService;
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import eu.etaxonomy.cdm.api.service.UpdateResult;
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import eu.etaxonomy.cdm.api.service.config.DescriptionAggregationConfiguration;
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import eu.etaxonomy.cdm.api.service.config.IdentifiableServiceConfiguratorImpl;
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import eu.etaxonomy.cdm.api.service.dto.RowWrapperDTO;
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import eu.etaxonomy.cdm.api.service.dto.SpecimenRowWrapperDTO;
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import eu.etaxonomy.cdm.common.CdmUtils;
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import eu.etaxonomy.cdm.common.monitor.IRemotingProgressMonitor;
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import eu.etaxonomy.cdm.hibernate.HibernateProxyHelper;
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import eu.etaxonomy.cdm.model.description.CategoricalData;
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import eu.etaxonomy.cdm.model.description.DescriptiveDataSet;
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import eu.etaxonomy.cdm.model.description.Feature;
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import eu.etaxonomy.cdm.model.description.PolytomousKey;
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import eu.etaxonomy.cdm.model.description.QuantitativeData;
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import eu.etaxonomy.cdm.model.description.SpecimenDescription;
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import eu.etaxonomy.cdm.model.description.TaxonDescription;
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import eu.etaxonomy.cdm.persistence.dto.SpecimenNodeWrapper;
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import eu.etaxonomy.cdm.strategy.generate.PolytomousKeyGenerator;
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import eu.etaxonomy.cdm.strategy.generate.PolytomousKeyGeneratorConfigurator;
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import eu.etaxonomy.taxeditor.editor.internal.TaxeditorEditorPlugin;
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import eu.etaxonomy.taxeditor.editor.l10n.Messages;
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import eu.etaxonomy.taxeditor.model.ImageResources;
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import eu.etaxonomy.taxeditor.model.MessagingUtils;
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import eu.etaxonomy.taxeditor.preference.IPreferenceKeys;
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import eu.etaxonomy.taxeditor.preference.PreferencesUtil;
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import eu.etaxonomy.taxeditor.store.CdmStore;
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import eu.etaxonomy.taxeditor.store.StoreUtil;
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/**
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* @author pplitzner
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* @since Jul 9, 2018
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*
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*/
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public class CharacterMatrixBottomToolbar extends Composite{
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private CharacterMatrix matrix;
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public CharacterMatrixBottomToolbar(CharacterMatrix matrix, int style) {
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super(matrix, style);
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this.matrix = matrix;
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init();
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}
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private void init() {
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setLayout(new RowLayout());
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GridDataFactory.fillDefaults().grab(true, false).applyTo(this);
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/**
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* Add description button
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*/
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Button btnAddDescription = new Button(this, SWT.PUSH);
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btnAddDescription.setImage(ImageResources.getImage(ImageResources.ADD_ICON_GREEN));
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btnAddDescription.addSelectionListener(new SelectionAdapter() {
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@Override
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public void widgetSelected(SelectionEvent e) {
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if(StoreUtil.promptCheckIsDirty(matrix.getPart())){
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return;
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}
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String error = ""; //$NON-NLS-1$
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SpecimenSelectionDialog dialog = new SpecimenSelectionDialog(matrix.getShell(), matrix);
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if(dialog.open()==Window.OK){
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Collection<SpecimenNodeWrapper> wrappers = dialog.getSpecimen();
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for (SpecimenNodeWrapper wrapper : wrappers) {
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SpecimenDescription specimenDescription = CdmStore.getService(IDescriptiveDataSetService.class)
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.findSpecimenDescription(matrix.getDescriptiveDataSet().getUuid(),
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wrapper.getUuidAndTitleCache().getUuid(), true);
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SpecimenRowWrapperDTO rowWrapper = CdmStore.getService(IDescriptiveDataSetService.class)
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.createSpecimenRowWrapper(specimenDescription, matrix.getDescriptiveDataSet());
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if(rowWrapper==null){
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error += specimenDescription;
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continue;
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}
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//add specimen description
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matrix.getDescriptions().add(rowWrapper);
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matrix.getDescriptiveDataSet().addDescription(specimenDescription);
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matrix.getCdmEntitiySession().load(specimenDescription, true);
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matrix.setDirty();
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matrix.getSpecimenCache().remove(wrapper);
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}
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if(CdmUtils.isNotBlank(error)){
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MessagingUtils.warningDialog(Messages.CharacterMatrixBottomToolbar_ERROR_ROW_CREATION_TITLE, this,
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String.format(Messages.CharacterMatrixBottomToolbar_ERROR_ROW_CREATION_MESSAGE, error));
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}
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}
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}
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});
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/**
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* Remove description button
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*/
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Button btnRemoveDescription = new Button(this, SWT.PUSH);
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btnRemoveDescription.setImage(ImageResources.getImage(ImageResources.ACTIVE_DELETE_ICON));
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btnRemoveDescription.addSelectionListener(new SelectionAdapter() {
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@Override
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public void widgetSelected(SelectionEvent e) {
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if(StoreUtil.promptCheckIsDirty(matrix.getPart())){
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return;
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}
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if(!MessagingUtils.confirmDialog(Messages.CharacterMatrixBottomToolbar_CONFIRM_DELETE_TITLE, Messages.CharacterMatrixBottomToolbar_CONFIRM_DELETE_MESSAGE)){
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return;
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}
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int[] fullySelectedRowPositions = matrix.getBodyLayer().getSelectionLayer().getFullySelectedRowPositions();
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List<RowWrapperDTO> toRemove = new ArrayList<>();
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for (int i : fullySelectedRowPositions) {
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Object rowObject = matrix.getBodyDataProvider().getRowObject(i);
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if(rowObject instanceof RowWrapperDTO){
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toRemove.add((RowWrapperDTO) rowObject);
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}
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}
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toRemove.forEach(rowToRemove -> {
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matrix.getDescriptions().remove(rowToRemove);
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CdmStore.getService(IDescriptiveDataSetService.class).removeDescription(
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rowToRemove.getDescription().getUuid(), matrix.getDescriptiveDataSet().getUuid());
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});
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}
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});
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/**
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* Aggregate button
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*/
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Button btnAggregate = new Button(this, SWT.PUSH);
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btnAggregate.setText(Messages.CharacterMatrixBottomToolbar_AGGREGATE);
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btnAggregate.addSelectionListener(new SelectionAdapter() {
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@Override
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public void widgetSelected(SelectionEvent e) {
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if(StoreUtil.promptCheckIsDirty(matrix.getPart())){
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return;
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}
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aggregatDescriptiveDataSet(matrix.getDescriptiveDataSet().getUuid());
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aggregateCharts();
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}
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});
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if(PreferencesUtil.getBooleanValue(IPreferenceKeys.SHOW_EXPERIMENTAL_FEATURES)){
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/**
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* Key generation button
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*/
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Button btnGenerateKey = new Button(this, SWT.PUSH);
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btnGenerateKey.setText("Generate Polytomous Key");
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btnGenerateKey.addSelectionListener(new SelectionAdapter() {
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@Override
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public void widgetSelected(SelectionEvent e) {
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if(StoreUtil.promptCheckIsDirty(matrix.getPart())){
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return;
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}
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PolytomousKeyGeneratorConfigurator keyConfig = new PolytomousKeyGeneratorConfigurator();
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DescriptiveDataSet descriptiveDataSet = matrix.getDescriptiveDataSet();
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keyConfig.setDataSet(descriptiveDataSet);
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PolytomousKey key = new PolytomousKeyGenerator().invoke(keyConfig);
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IPolytomousKeyService keyService = CdmStore.getService(IPolytomousKeyService.class);
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IdentifiableServiceConfiguratorImpl<PolytomousKey> serviceConfig= new IdentifiableServiceConfiguratorImpl<>();
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serviceConfig.setTitleSearchString(descriptiveDataSet.getTitleCache());
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List<PolytomousKey> list = keyService.findByTitle(serviceConfig).getRecords();
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if(list!=null){
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// TODO clear old key
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System.out.println("Key with same name found for this data set found");
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}
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key.setTitleCache(descriptiveDataSet.getTitleCache(), true);
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keyService.save(key);
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key.print(System.out);
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}
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});
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}
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}
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private void aggregatDescriptiveDataSet(UUID descriptiveDataSetUuid){
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DescriptionAggregationConfiguration config = new DescriptionAggregationConfiguration();
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config.setRecursiveAggregation(true);
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UUID monitorUuid = CdmApplicationState.getLongRunningTasksService().aggregateDescriptiveDataSet(descriptiveDataSetUuid, config);
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String jobLabel = "Aggregate Descriptive Data Set";
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Job job = Job.create(jobLabel, (ICoreRunnable) monitor -> {
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SubMonitor subMonitor = SubMonitor.convert(monitor);
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subMonitor.beginTask(jobLabel, IProgressMonitor.UNKNOWN);
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IRemotingProgressMonitor remotingMonitor;
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try {
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remotingMonitor = CdmStore.getProgressMonitorClientManager()
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.pollMonitor(jobLabel,
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monitorUuid,
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50,
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null,
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(List)null,
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subMonitor);
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Object resultObject = remotingMonitor.getResult();
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if(resultObject instanceof Exception){
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MessagingUtils.errorDialog("Aggregation failed", this, "Aggregation was not successfull", TaxeditorEditorPlugin.PLUGIN_ID, (Exception)resultObject, true, true);
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}
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else if(resultObject instanceof UpdateResult){
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UpdateResult result = (UpdateResult) resultObject;
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IDescriptiveDataSetService dataSetService = CdmStore.getService(IDescriptiveDataSetService.class);
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result.getUpdatedObjects().stream()
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.filter(o -> o instanceof TaxonDescription)
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.map(o -> HibernateProxyHelper.deproxy(o, TaxonDescription.class))
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.forEach(taxonDescription -> matrix.getDescriptions()
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.add(dataSetService.createTaxonRowWrapper(
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taxonDescription.getUuid(),
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matrix.getDescriptiveDataSet().getUuid())));
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}
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} catch (InterruptedException e) {
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return;
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}
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monitor.done();
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});
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job.addJobChangeListener(new JobChangeAdapter(){
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@Override
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public void done(IJobChangeEvent event) {
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CharacterMatrixBottomToolbar.this.getDisplay().asyncExec(()->{
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matrix.redraw();
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});
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}
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});
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job.schedule();
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}
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private void aggregateCharts() {
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new Job("aggregate charts") {
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@Override
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protected IStatus run(IProgressMonitor monitor) {
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aggregateCategorcialHistogram(matrix.getFeatureToHistogramMap());
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aggregateQuantitativeSummary(matrix.getFeatureToQuantDataStatisticsMap());
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return Status.OK_STATUS;
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}
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}.schedule();
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}
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@SuppressWarnings("unchecked")
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private void aggregateCategorcialHistogram(Map<Feature, CategoricalDataHistogram> featureToHistogramMap) {
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featureToHistogramMap.clear();
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matrix.getDescriptions().stream()
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.filter(desc->desc instanceof SpecimenRowWrapperDTO)
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.forEach(o -> ((SpecimenRowWrapperDTO) o).getDescription().getElements().stream()
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.filter(descriptionElement -> descriptionElement instanceof CategoricalData)
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.forEach(categoricalData -> {
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Feature feature = ((CategoricalData) categoricalData).getFeature();
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CategoricalDataHistogram dataHistogram = featureToHistogramMap.get(feature);
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if(dataHistogram==null){
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dataHistogram = new CategoricalDataHistogram(feature);
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}
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featureToHistogramMap.put(feature, dataHistogram);
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((CategoricalData) categoricalData).getStateData()
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.forEach(stateData -> featureToHistogramMap.get(feature).addState(stateData.getState()));
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}));
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}
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@SuppressWarnings("unchecked")
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private void aggregateQuantitativeSummary(Map<Feature, QuantitativeDataStatistics> featureToQuantDataStatisticsMap) {
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featureToQuantDataStatisticsMap.clear();
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matrix.getDescriptions().stream()
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.filter(desc->desc instanceof SpecimenRowWrapperDTO)
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.forEach(o -> ((SpecimenRowWrapperDTO) o).getDescription().getElements().stream()
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.filter(descriptionElement -> descriptionElement instanceof QuantitativeData)
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.forEach(quantData -> {
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Feature feature = ((QuantitativeData) quantData).getFeature();
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QuantitativeDataStatistics dataStatistics = featureToQuantDataStatisticsMap.get(feature);
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if(dataStatistics==null){
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dataStatistics = new QuantitativeDataStatistics();
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}
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featureToQuantDataStatisticsMap.put(feature, dataStatistics);
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dataStatistics.addQuantitativeData((QuantitativeData) quantData);
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}));
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}
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}
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