|
1
|
// $Id$
|
|
2
|
/**
|
|
3
|
* Copyright (C) 2013 EDIT
|
|
4
|
* European Distributed Institute of Taxonomy
|
|
5
|
* http://www.e-taxonomy.eu
|
|
6
|
*
|
|
7
|
* The contents of this file are subject to the Mozilla Public License Version 1.1
|
|
8
|
* See LICENSE.TXT at the top of this package for the full license terms.
|
|
9
|
*/
|
|
10
|
package eu.etaxonomy.taxeditor.editor.view.dataimport.transientServices;
|
|
11
|
|
|
12
|
import java.io.IOException;
|
|
13
|
import java.util.Collection;
|
|
14
|
import java.util.HashSet;
|
|
15
|
import java.util.List;
|
|
16
|
import java.util.Map;
|
|
17
|
import java.util.Set;
|
|
18
|
import java.util.UUID;
|
|
19
|
|
|
20
|
import org.apache.lucene.index.CorruptIndexException;
|
|
21
|
import org.apache.lucene.queryParser.ParseException;
|
|
22
|
import org.hibernate.LockOptions;
|
|
23
|
import org.hibernate.Session;
|
|
24
|
import org.hibernate.criterion.Criterion;
|
|
25
|
import org.hibernate.envers.query.criteria.AuditCriterion;
|
|
26
|
import org.hibernate.search.spatial.impl.Rectangle;
|
|
27
|
|
|
28
|
import eu.etaxonomy.cdm.api.facade.DerivedUnitFacade;
|
|
29
|
import eu.etaxonomy.cdm.api.facade.DerivedUnitFacadeNotSupportedException;
|
|
30
|
import eu.etaxonomy.cdm.api.service.DeleteResult;
|
|
31
|
import eu.etaxonomy.cdm.api.service.IOccurrenceService;
|
|
32
|
import eu.etaxonomy.cdm.api.service.config.DeleteConfiguratorBase;
|
|
33
|
import eu.etaxonomy.cdm.api.service.config.IIdentifiableEntityServiceConfigurator;
|
|
34
|
import eu.etaxonomy.cdm.api.service.config.SpecimenDeleteConfigurator;
|
|
35
|
import eu.etaxonomy.cdm.api.service.dto.DerivateHierarchyDTO;
|
|
36
|
import eu.etaxonomy.cdm.api.service.dto.FindByIdentifierDTO;
|
|
37
|
import eu.etaxonomy.cdm.api.service.pager.Pager;
|
|
38
|
import eu.etaxonomy.cdm.api.service.search.SearchResult;
|
|
39
|
import eu.etaxonomy.cdm.api.service.util.TaxonRelationshipEdge;
|
|
40
|
import eu.etaxonomy.cdm.common.monitor.IProgressMonitor;
|
|
41
|
import eu.etaxonomy.cdm.model.agent.AgentBase;
|
|
42
|
import eu.etaxonomy.cdm.model.common.Annotation;
|
|
43
|
import eu.etaxonomy.cdm.model.common.CdmBase;
|
|
44
|
import eu.etaxonomy.cdm.model.common.DefinedTerm;
|
|
45
|
import eu.etaxonomy.cdm.model.common.ICdmBase;
|
|
46
|
import eu.etaxonomy.cdm.model.common.ISourceable;
|
|
47
|
import eu.etaxonomy.cdm.model.common.IdentifiableSource;
|
|
48
|
import eu.etaxonomy.cdm.model.common.LSID;
|
|
49
|
import eu.etaxonomy.cdm.model.common.Language;
|
|
50
|
import eu.etaxonomy.cdm.model.common.Marker;
|
|
51
|
import eu.etaxonomy.cdm.model.common.MarkerType;
|
|
52
|
import eu.etaxonomy.cdm.model.common.UuidAndTitleCache;
|
|
53
|
import eu.etaxonomy.cdm.model.description.DescriptionBase;
|
|
54
|
import eu.etaxonomy.cdm.model.description.IndividualsAssociation;
|
|
55
|
import eu.etaxonomy.cdm.model.location.Country;
|
|
56
|
import eu.etaxonomy.cdm.model.media.Media;
|
|
57
|
import eu.etaxonomy.cdm.model.media.Rights;
|
|
58
|
import eu.etaxonomy.cdm.model.molecular.DnaSample;
|
|
59
|
import eu.etaxonomy.cdm.model.molecular.Sequence;
|
|
60
|
import eu.etaxonomy.cdm.model.name.SpecimenTypeDesignation;
|
|
61
|
import eu.etaxonomy.cdm.model.occurrence.DerivationEvent;
|
|
62
|
import eu.etaxonomy.cdm.model.occurrence.DerivedUnit;
|
|
63
|
import eu.etaxonomy.cdm.model.occurrence.DeterminationEvent;
|
|
64
|
import eu.etaxonomy.cdm.model.occurrence.FieldUnit;
|
|
65
|
import eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase;
|
|
66
|
import eu.etaxonomy.cdm.model.taxon.Taxon;
|
|
67
|
import eu.etaxonomy.cdm.model.taxon.TaxonBase;
|
|
68
|
import eu.etaxonomy.cdm.model.view.AuditEvent;
|
|
69
|
import eu.etaxonomy.cdm.model.view.AuditEventRecord;
|
|
70
|
import eu.etaxonomy.cdm.persistence.dao.common.AuditEventSort;
|
|
71
|
import eu.etaxonomy.cdm.persistence.query.Grouping;
|
|
72
|
import eu.etaxonomy.cdm.persistence.query.MatchMode;
|
|
73
|
import eu.etaxonomy.cdm.persistence.query.OrderHint;
|
|
74
|
import eu.etaxonomy.cdm.strategy.cache.common.IIdentifiableEntityCacheStrategy;
|
|
75
|
import eu.etaxonomy.cdm.strategy.match.IMatchStrategy;
|
|
76
|
import eu.etaxonomy.cdm.strategy.merge.IMergeStrategy;
|
|
77
|
|
|
78
|
/**
|
|
79
|
* @author pplitzner
|
|
80
|
* @date 26.09.2013
|
|
81
|
*
|
|
82
|
*/
|
|
83
|
public class TransientOccurenceService implements IOccurrenceService {
|
|
84
|
|
|
85
|
private final IOccurrenceService defaultService;
|
|
86
|
private final Collection<SpecimenOrObservationBase<?>> units;
|
|
87
|
|
|
88
|
/**
|
|
89
|
* @param defaultService
|
|
90
|
*/
|
|
91
|
public TransientOccurenceService(IOccurrenceService defaultService) {
|
|
92
|
this.defaultService = defaultService;
|
|
93
|
this.units = new HashSet<SpecimenOrObservationBase<?>>();
|
|
94
|
}
|
|
95
|
|
|
96
|
/**
|
|
97
|
* @param t
|
|
98
|
* @param pageSize
|
|
99
|
* @param pageNumber
|
|
100
|
* @param sort
|
|
101
|
* @param propertyPaths
|
|
102
|
* @return
|
|
103
|
* @see eu.etaxonomy.cdm.api.service.IVersionableService#pageAuditEvents(eu.etaxonomy.cdm.model.common.VersionableEntity, java.lang.Integer, java.lang.Integer, eu.etaxonomy.cdm.persistence.dao.common.AuditEventSort, java.util.List)
|
|
104
|
*/
|
|
105
|
@Override
|
|
106
|
public Pager<AuditEventRecord<SpecimenOrObservationBase>> pageAuditEvents(SpecimenOrObservationBase t, Integer pageSize, Integer pageNumber, AuditEventSort sort, List<String> propertyPaths) {
|
|
107
|
return defaultService.pageAuditEvents(t, pageSize, pageNumber, sort, propertyPaths);
|
|
108
|
}
|
|
109
|
|
|
110
|
/**
|
|
111
|
* @param annotatedObj
|
|
112
|
* @param status
|
|
113
|
* @param pageSize
|
|
114
|
* @param pageNumber
|
|
115
|
* @param orderHints
|
|
116
|
* @param propertyPaths
|
|
117
|
* @return
|
|
118
|
* @see eu.etaxonomy.cdm.api.service.IAnnotatableService#getAnnotations(eu.etaxonomy.cdm.model.common.AnnotatableEntity, eu.etaxonomy.cdm.model.common.MarkerType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
119
|
*/
|
|
120
|
@Override
|
|
121
|
public Pager<Annotation> getAnnotations(SpecimenOrObservationBase annotatedObj, MarkerType status, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
|
|
122
|
return defaultService.getAnnotations(annotatedObj, status, pageSize, pageNumber, orderHints, propertyPaths);
|
|
123
|
}
|
|
124
|
|
|
125
|
/**
|
|
126
|
*
|
|
127
|
* @see eu.etaxonomy.cdm.api.service.IService#clear()
|
|
128
|
*/
|
|
129
|
@Override
|
|
130
|
public void clear() {
|
|
131
|
defaultService.clear();
|
|
132
|
}
|
|
133
|
|
|
134
|
/**
|
|
135
|
* @param t
|
|
136
|
* @param lockMode
|
|
137
|
* @see eu.etaxonomy.cdm.api.service.IService#lock(eu.etaxonomy.cdm.model.common.ICdmBase, org.hibernate.LockMode)
|
|
138
|
*/
|
|
139
|
@Override
|
|
140
|
public void lock(SpecimenOrObservationBase t, LockOptions lockOptions) {
|
|
141
|
defaultService.lock(t, lockOptions);
|
|
142
|
}
|
|
143
|
|
|
144
|
/**
|
|
145
|
* @param t
|
|
146
|
* @param lockMode
|
|
147
|
* @param propertyPaths
|
|
148
|
* @see eu.etaxonomy.cdm.api.service.IService#refresh(eu.etaxonomy.cdm.model.common.ICdmBase, org.hibernate.LockMode, java.util.List)
|
|
149
|
*/
|
|
150
|
@Override
|
|
151
|
public void refresh(SpecimenOrObservationBase t, LockOptions lockOptions, List<String> propertyPaths) {
|
|
152
|
defaultService.refresh(t, lockOptions, propertyPaths);
|
|
153
|
}
|
|
154
|
|
|
155
|
/**
|
|
156
|
*
|
|
157
|
* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#updateTitleCache()
|
|
158
|
*/
|
|
159
|
@Override
|
|
160
|
public void updateTitleCache() {
|
|
161
|
defaultService.updateTitleCache();
|
|
162
|
}
|
|
163
|
|
|
164
|
/**
|
|
165
|
* @param t
|
|
166
|
* @return
|
|
167
|
* @see eu.etaxonomy.cdm.api.service.IVersionableService#getNextAuditEvent(eu.etaxonomy.cdm.model.common.VersionableEntity)
|
|
168
|
*/
|
|
169
|
@Override
|
|
170
|
public AuditEventRecord<SpecimenOrObservationBase> getNextAuditEvent(SpecimenOrObservationBase t) {
|
|
171
|
return defaultService.getNextAuditEvent(t);
|
|
172
|
}
|
|
173
|
|
|
174
|
/**
|
|
175
|
* @param annotatableEntity
|
|
176
|
* @param technical
|
|
177
|
* @param pageSize
|
|
178
|
* @param pageNumber
|
|
179
|
* @param orderHints
|
|
180
|
* @param propertyPaths
|
|
181
|
* @return
|
|
182
|
* @see eu.etaxonomy.cdm.api.service.IAnnotatableService#getMarkers(eu.etaxonomy.cdm.model.common.AnnotatableEntity, java.lang.Boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
183
|
*/
|
|
184
|
@Override
|
|
185
|
public Pager<Marker> getMarkers(SpecimenOrObservationBase annotatableEntity, Boolean technical, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
|
|
186
|
return defaultService.getMarkers(annotatableEntity, technical, pageSize, pageNumber, orderHints, propertyPaths);
|
|
187
|
}
|
|
188
|
|
|
189
|
/**
|
|
190
|
* @param clazz
|
|
191
|
* @param stepSize
|
|
192
|
* @param cacheStrategy
|
|
193
|
* @param monitor
|
|
194
|
* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#updateTitleCache(java.lang.Class, java.lang.Integer, eu.etaxonomy.cdm.strategy.cache.common.IIdentifiableEntityCacheStrategy, eu.etaxonomy.cdm.common.monitor.IProgressMonitor)
|
|
195
|
*/
|
|
196
|
@Override
|
|
197
|
public void updateTitleCache(Class<? extends SpecimenOrObservationBase> clazz, Integer stepSize, IIdentifiableEntityCacheStrategy<SpecimenOrObservationBase> cacheStrategy, IProgressMonitor monitor) {
|
|
198
|
defaultService.updateTitleCache(clazz, stepSize, cacheStrategy, monitor);
|
|
199
|
}
|
|
200
|
|
|
201
|
/**
|
|
202
|
* @param t
|
|
203
|
* @return
|
|
204
|
* @see eu.etaxonomy.cdm.api.service.IVersionableService#getPreviousAuditEvent(eu.etaxonomy.cdm.model.common.VersionableEntity)
|
|
205
|
*/
|
|
206
|
@Override
|
|
207
|
public AuditEventRecord<SpecimenOrObservationBase> getPreviousAuditEvent(SpecimenOrObservationBase t) {
|
|
208
|
return defaultService.getPreviousAuditEvent(t);
|
|
209
|
}
|
|
210
|
|
|
211
|
/**
|
|
212
|
* @param iso639
|
|
213
|
* @return
|
|
214
|
* @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getCountryByIso(java.lang.String)
|
|
215
|
*/
|
|
216
|
@Override
|
|
217
|
public Country getCountryByIso(String iso639) {
|
|
218
|
return defaultService.getCountryByIso(iso639);
|
|
219
|
}
|
|
220
|
|
|
221
|
/**
|
|
222
|
* @param clazz
|
|
223
|
* @return
|
|
224
|
* @see eu.etaxonomy.cdm.api.service.IService#count(java.lang.Class)
|
|
225
|
*/
|
|
226
|
@Override
|
|
227
|
public int count(Class<? extends SpecimenOrObservationBase> clazz) {
|
|
228
|
return defaultService.count(clazz);
|
|
229
|
}
|
|
230
|
|
|
231
|
/**
|
|
232
|
* @param name
|
|
233
|
* @return
|
|
234
|
* @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getCountryByName(java.lang.String)
|
|
235
|
*/
|
|
236
|
@Override
|
|
237
|
public List<Country> getCountryByName(String name) {
|
|
238
|
return defaultService.getCountryByName(name);
|
|
239
|
}
|
|
240
|
|
|
241
|
/**
|
|
242
|
* @param type
|
|
243
|
* @param determinedAs
|
|
244
|
* @param limit
|
|
245
|
* @param start
|
|
246
|
* @param orderHints
|
|
247
|
* @param propertyPaths
|
|
248
|
* @return
|
|
249
|
* @see eu.etaxonomy.cdm.api.service.IOccurrenceService#list(java.lang.Class, eu.etaxonomy.cdm.model.taxon.TaxonBase, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
250
|
*/
|
|
251
|
@Override
|
|
252
|
public Pager<SpecimenOrObservationBase> list(Class<? extends SpecimenOrObservationBase> type, TaxonBase determinedAs, Integer limit, Integer start, List<OrderHint> orderHints, List<String> propertyPaths) {
|
|
253
|
return defaultService.list(type, determinedAs, limit, start, orderHints, propertyPaths);
|
|
254
|
}
|
|
255
|
|
|
256
|
/**
|
|
257
|
* @param clazz
|
|
258
|
* @param from
|
|
259
|
* @param to
|
|
260
|
* @param criteria
|
|
261
|
* @param pageSize
|
|
262
|
* @param pageValue
|
|
263
|
* @param sort
|
|
264
|
* @param propertyPaths
|
|
265
|
* @return
|
|
266
|
* @see eu.etaxonomy.cdm.api.service.IVersionableService#pageAuditEvents(java.lang.Class, eu.etaxonomy.cdm.model.view.AuditEvent, eu.etaxonomy.cdm.model.view.AuditEvent, java.util.List, java.lang.Integer, java.lang.Integer, eu.etaxonomy.cdm.persistence.dao.common.AuditEventSort, java.util.List)
|
|
267
|
*/
|
|
268
|
@Override
|
|
269
|
public Pager<AuditEventRecord<SpecimenOrObservationBase>> pageAuditEvents(Class<? extends SpecimenOrObservationBase> clazz, AuditEvent from, AuditEvent to, List<AuditCriterion> criteria, Integer pageSize, Integer pageValue, AuditEventSort sort, List<String> propertyPaths) {
|
|
270
|
return defaultService.pageAuditEvents(clazz, from, to, criteria, pageSize, pageValue, sort, propertyPaths);
|
|
271
|
}
|
|
272
|
|
|
273
|
/**
|
|
274
|
* @param lsid
|
|
275
|
* @return
|
|
276
|
* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#find(eu.etaxonomy.cdm.model.common.LSID)
|
|
277
|
*/
|
|
278
|
@Override
|
|
279
|
public SpecimenOrObservationBase find(LSID lsid) {
|
|
280
|
return defaultService.find(lsid);
|
|
281
|
}
|
|
282
|
|
|
283
|
/**
|
|
284
|
* @param persistentObject
|
|
285
|
* @return
|
|
286
|
* @see eu.etaxonomy.cdm.api.service.IService#delete(eu.etaxonomy.cdm.model.common.ICdmBase)
|
|
287
|
*/
|
|
288
|
@Override
|
|
289
|
public DeleteResult delete(SpecimenOrObservationBase persistentObject) {
|
|
290
|
return defaultService.delete(persistentObject);
|
|
291
|
}
|
|
292
|
|
|
293
|
/**
|
|
294
|
* @param clazz
|
|
295
|
* @param technical
|
|
296
|
* @param pageSize
|
|
297
|
* @param pageNumber
|
|
298
|
* @param propertyPaths
|
|
299
|
* @return
|
|
300
|
* @see eu.etaxonomy.cdm.api.service.IAnnotatableService#groupMarkers(java.lang.Class, java.lang.Boolean, java.lang.Integer, java.lang.Integer, java.util.List)
|
|
301
|
*/
|
|
302
|
@Override
|
|
303
|
public List<Object[]> groupMarkers(Class<? extends SpecimenOrObservationBase> clazz, Boolean technical, Integer pageSize, Integer pageNumber, List<String> propertyPaths) {
|
|
304
|
return defaultService.groupMarkers(clazz, technical, pageSize, pageNumber, propertyPaths);
|
|
305
|
}
|
|
306
|
|
|
307
|
/**
|
|
308
|
* @param uuid
|
|
309
|
* @return
|
|
310
|
* @see eu.etaxonomy.cdm.api.service.IService#exists(java.util.UUID)
|
|
311
|
*/
|
|
312
|
@Override
|
|
313
|
public boolean exists(UUID uuid) {
|
|
314
|
return defaultService.exists(uuid);
|
|
315
|
}
|
|
316
|
|
|
317
|
/**
|
|
318
|
* @param x
|
|
319
|
* @param y
|
|
320
|
* @return
|
|
321
|
* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#replace(eu.etaxonomy.cdm.model.common.IdentifiableEntity, eu.etaxonomy.cdm.model.common.IdentifiableEntity)
|
|
322
|
*/
|
|
323
|
@Override
|
|
324
|
public SpecimenOrObservationBase replace(SpecimenOrObservationBase x, SpecimenOrObservationBase y) {
|
|
325
|
return defaultService.replace(x, y);
|
|
326
|
}
|
|
327
|
|
|
328
|
/**
|
|
329
|
* @param uuidSet
|
|
330
|
* @return
|
|
331
|
* @see eu.etaxonomy.cdm.api.service.IService#find(java.util.Set)
|
|
332
|
*/
|
|
333
|
@Override
|
|
334
|
public List<SpecimenOrObservationBase> find(Set<UUID> uuidSet) {
|
|
335
|
return defaultService.find(uuidSet);
|
|
336
|
}
|
|
337
|
|
|
338
|
/**
|
|
339
|
* @param t
|
|
340
|
* @param pageSize
|
|
341
|
* @param pageNumber
|
|
342
|
* @param propertyPaths
|
|
343
|
* @return
|
|
344
|
* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getSources(eu.etaxonomy.cdm.model.common.IdentifiableEntity, java.lang.Integer, java.lang.Integer, java.util.List)
|
|
345
|
*/
|
|
346
|
@Override
|
|
347
|
public Pager<IdentifiableSource> getSources(SpecimenOrObservationBase t, Integer pageSize, Integer pageNumber, List<String> propertyPaths) {
|
|
348
|
return defaultService.getSources(t, pageSize, pageNumber, propertyPaths);
|
|
349
|
}
|
|
350
|
|
|
351
|
/**
|
|
352
|
* @param uuid
|
|
353
|
* @return
|
|
354
|
* @see eu.etaxonomy.cdm.api.service.IService#find(java.util.UUID)
|
|
355
|
*/
|
|
356
|
@Override
|
|
357
|
public SpecimenOrObservationBase find(UUID uuid) {
|
|
358
|
return defaultService.find(uuid);
|
|
359
|
}
|
|
360
|
|
|
361
|
/**
|
|
362
|
* @param id
|
|
363
|
* @return
|
|
364
|
* @see eu.etaxonomy.cdm.api.service.IService#find(int)
|
|
365
|
*/
|
|
366
|
@Override
|
|
367
|
public SpecimenOrObservationBase find(int id) {
|
|
368
|
return defaultService.find(id);
|
|
369
|
}
|
|
370
|
|
|
371
|
/**
|
|
372
|
* @param t
|
|
373
|
* @param pageSize
|
|
374
|
* @param pageNumber
|
|
375
|
* @param propertyPaths
|
|
376
|
* @return
|
|
377
|
* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getRights(eu.etaxonomy.cdm.model.common.IdentifiableEntity, java.lang.Integer, java.lang.Integer, java.util.List)
|
|
378
|
*/
|
|
379
|
@Override
|
|
380
|
public Pager<Rights> getRights(SpecimenOrObservationBase t, Integer pageSize, Integer pageNumber, List<String> propertyPaths) {
|
|
381
|
return defaultService.getRights(t, pageSize, pageNumber, propertyPaths);
|
|
382
|
}
|
|
383
|
|
|
384
|
/**
|
|
385
|
* @param clazz
|
|
386
|
* @param technical
|
|
387
|
* @return
|
|
388
|
* @see eu.etaxonomy.cdm.api.service.IAnnotatableService#countMarkers(java.lang.Class, java.lang.Boolean)
|
|
389
|
*/
|
|
390
|
@Override
|
|
391
|
public int countMarkers(Class<? extends SpecimenOrObservationBase> clazz, Boolean technical) {
|
|
392
|
return defaultService.countMarkers(clazz, technical);
|
|
393
|
}
|
|
394
|
|
|
395
|
/**
|
|
396
|
* @param occurence
|
|
397
|
* @param pageSize
|
|
398
|
* @param pageNumber
|
|
399
|
* @param propertyPaths
|
|
400
|
* @return
|
|
401
|
* @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getMedia(eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, java.lang.Integer, java.lang.Integer, java.util.List)
|
|
402
|
*/
|
|
403
|
@Override
|
|
404
|
public Pager<Media> getMedia(SpecimenOrObservationBase occurence, Integer pageSize, Integer pageNumber, List<String> propertyPaths) {
|
|
405
|
return defaultService.getMedia(occurence, pageSize, pageNumber, propertyPaths);
|
|
406
|
}
|
|
407
|
|
|
408
|
/**
|
|
409
|
* @param idSet
|
|
410
|
* @return
|
|
411
|
* @see eu.etaxonomy.cdm.api.service.IService#findById(java.util.Set)
|
|
412
|
*/
|
|
413
|
@Override
|
|
414
|
public List<SpecimenOrObservationBase> findById(Set<Integer> idSet) {
|
|
415
|
return defaultService.findById(idSet);
|
|
416
|
}
|
|
417
|
|
|
418
|
/**
|
|
419
|
* @param clazz
|
|
420
|
* @param idInSource
|
|
421
|
* @param idNamespace
|
|
422
|
* @return
|
|
423
|
* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getSourcedObjectByIdInSource(java.lang.Class, java.lang.String, java.lang.String)
|
|
424
|
*/
|
|
425
|
@Override
|
|
426
|
public ISourceable getSourcedObjectByIdInSource(Class clazz, String idInSource, String idNamespace) {
|
|
427
|
return defaultService.getSourcedObjectByIdInSource(clazz, idInSource, idNamespace);
|
|
428
|
}
|
|
429
|
|
|
430
|
/**
|
|
431
|
* @return
|
|
432
|
* @see eu.etaxonomy.cdm.api.service.IService#getSession()
|
|
433
|
*/
|
|
434
|
@Override
|
|
435
|
public Session getSession() {
|
|
436
|
return defaultService.getSession();
|
|
437
|
}
|
|
438
|
|
|
439
|
/**
|
|
440
|
* @return
|
|
441
|
* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getUuidAndTitleCache()
|
|
442
|
*/
|
|
443
|
@Override
|
|
444
|
public List<UuidAndTitleCache<SpecimenOrObservationBase>> getUuidAndTitleCache() {
|
|
445
|
return defaultService.getUuidAndTitleCache();
|
|
446
|
}
|
|
447
|
|
|
448
|
/**
|
|
449
|
* @param clazz
|
|
450
|
* @param limit
|
|
451
|
* @param start
|
|
452
|
* @param groups
|
|
453
|
* @param propertyPaths
|
|
454
|
* @return
|
|
455
|
* @see eu.etaxonomy.cdm.api.service.IService#group(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
456
|
*/
|
|
457
|
@Override
|
|
458
|
public List<Object[]> group(Class<? extends SpecimenOrObservationBase> clazz, Integer limit, Integer start, List<Grouping> groups, List<String> propertyPaths) {
|
|
459
|
return defaultService.group(clazz, limit, start, groups, propertyPaths);
|
|
460
|
}
|
|
461
|
|
|
462
|
/**
|
|
463
|
* @param occurence
|
|
464
|
* @param taxonBase
|
|
465
|
* @param pageSize
|
|
466
|
* @param pageNumber
|
|
467
|
* @param propertyPaths
|
|
468
|
* @return
|
|
469
|
* @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getDeterminations(eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, eu.etaxonomy.cdm.model.taxon.TaxonBase, java.lang.Integer, java.lang.Integer, java.util.List)
|
|
470
|
*/
|
|
471
|
@Override
|
|
472
|
public Pager<DeterminationEvent> getDeterminations(SpecimenOrObservationBase occurence, TaxonBase taxonBase, Integer pageSize, Integer pageNumber, List<String> propertyPaths) {
|
|
473
|
return defaultService.getDeterminations(occurence, taxonBase, pageSize, pageNumber, propertyPaths);
|
|
474
|
}
|
|
475
|
|
|
476
|
/**
|
|
477
|
* @param clazz
|
|
478
|
* @param queryString
|
|
479
|
* @param matchmode
|
|
480
|
* @param criteria
|
|
481
|
* @param pageSize
|
|
482
|
* @param pageNumber
|
|
483
|
* @param orderHints
|
|
484
|
* @param propertyPaths
|
|
485
|
* @return
|
|
486
|
* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#findByTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
487
|
*/
|
|
488
|
@Override
|
|
489
|
public Pager<SpecimenOrObservationBase> findByTitle(Class<? extends SpecimenOrObservationBase> clazz, String queryString, MatchMode matchmode, List<Criterion> criteria, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
|
|
490
|
return defaultService.findByTitle(clazz, queryString, matchmode, criteria, pageSize, pageNumber, orderHints, propertyPaths);
|
|
491
|
}
|
|
492
|
|
|
493
|
/**
|
|
494
|
* @param occurence
|
|
495
|
* @param pageSize
|
|
496
|
* @param pageNumber
|
|
497
|
* @param propertyPaths
|
|
498
|
* @return
|
|
499
|
* @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getDerivationEvents(eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, java.lang.Integer, java.lang.Integer, java.util.List)
|
|
500
|
*/
|
|
501
|
@Override
|
|
502
|
public Pager<DerivationEvent> getDerivationEvents(SpecimenOrObservationBase occurence, Integer pageSize, Integer pageNumber, List<String> propertyPaths) {
|
|
503
|
return defaultService.getDerivationEvents(occurence, pageSize, pageNumber, propertyPaths);
|
|
504
|
}
|
|
505
|
|
|
506
|
/**
|
|
507
|
* @param type
|
|
508
|
* @param limit
|
|
509
|
* @param start
|
|
510
|
* @param orderHints
|
|
511
|
* @param propertyPaths
|
|
512
|
* @return
|
|
513
|
* @see eu.etaxonomy.cdm.api.service.IService#list(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
514
|
*/
|
|
515
|
@Override
|
|
516
|
public <S extends SpecimenOrObservationBase> List<S> list(Class<S> type, Integer limit, Integer start, List<OrderHint> orderHints, List<String> propertyPaths) {
|
|
517
|
return defaultService.list(type, limit, start, orderHints, propertyPaths);
|
|
518
|
}
|
|
519
|
|
|
520
|
/**
|
|
521
|
* @param clazz
|
|
522
|
* @param query
|
|
523
|
* @param pageSize
|
|
524
|
* @param pageNumber
|
|
525
|
* @param orderHints
|
|
526
|
* @param propertyPaths
|
|
527
|
* @return
|
|
528
|
* @see eu.etaxonomy.cdm.api.service.IOccurrenceService#search(java.lang.Class, java.lang.String, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
529
|
*/
|
|
530
|
@Override
|
|
531
|
public Pager<SpecimenOrObservationBase> search(Class<? extends SpecimenOrObservationBase> clazz, String query, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
|
|
532
|
return defaultService.search(clazz, query, pageSize, pageNumber, orderHints, propertyPaths);
|
|
533
|
}
|
|
534
|
|
|
535
|
/**
|
|
536
|
* @param configurator
|
|
537
|
* @return
|
|
538
|
* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#findByTitle(eu.etaxonomy.cdm.api.service.config.IIdentifiableEntityServiceConfigurator)
|
|
539
|
*/
|
|
540
|
@Override
|
|
541
|
public Pager<SpecimenOrObservationBase> findByTitle(IIdentifiableEntityServiceConfigurator<SpecimenOrObservationBase> configurator) {
|
|
542
|
return defaultService.findByTitle(configurator);
|
|
543
|
}
|
|
544
|
|
|
545
|
/**
|
|
546
|
* @param clazz
|
|
547
|
* @param queryString
|
|
548
|
* @param matchmode
|
|
549
|
* @param criteria
|
|
550
|
* @return
|
|
551
|
* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#countByTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List)
|
|
552
|
*/
|
|
553
|
@Override
|
|
554
|
public Integer countByTitle(Class<? extends SpecimenOrObservationBase> clazz, String queryString, MatchMode matchmode, List<Criterion> criteria) {
|
|
555
|
return defaultService.countByTitle(clazz, queryString, matchmode, criteria);
|
|
556
|
}
|
|
557
|
|
|
558
|
/**
|
|
559
|
* @param uuid
|
|
560
|
* @return
|
|
561
|
* @see eu.etaxonomy.cdm.api.service.IService#load(java.util.UUID)
|
|
562
|
*/
|
|
563
|
@Override
|
|
564
|
public SpecimenOrObservationBase load(UUID uuid) {
|
|
565
|
return defaultService.load(uuid);
|
|
566
|
}
|
|
567
|
|
|
568
|
/**
|
|
569
|
* @param uuid
|
|
570
|
* @param propertyPaths
|
|
571
|
* @return
|
|
572
|
* @see eu.etaxonomy.cdm.api.service.IService#load(java.util.UUID, java.util.List)
|
|
573
|
*/
|
|
574
|
@Override
|
|
575
|
public SpecimenOrObservationBase load(UUID uuid, List<String> propertyPaths) {
|
|
576
|
return defaultService.load(uuid, propertyPaths);
|
|
577
|
}
|
|
578
|
|
|
579
|
/**
|
|
580
|
* @param configurator
|
|
581
|
* @return
|
|
582
|
* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#countByTitle(eu.etaxonomy.cdm.api.service.config.IIdentifiableEntityServiceConfigurator)
|
|
583
|
*/
|
|
584
|
@Override
|
|
585
|
public Integer countByTitle(IIdentifiableEntityServiceConfigurator<SpecimenOrObservationBase> configurator) {
|
|
586
|
return defaultService.countByTitle(configurator);
|
|
587
|
}
|
|
588
|
|
|
589
|
/**
|
|
590
|
* @return
|
|
591
|
* @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getFieldUnitUuidAndTitleCache()
|
|
592
|
*/
|
|
593
|
@Override
|
|
594
|
public List<UuidAndTitleCache<FieldUnit>> getFieldUnitUuidAndTitleCache() {
|
|
595
|
return defaultService.getFieldUnitUuidAndTitleCache();
|
|
596
|
}
|
|
597
|
|
|
598
|
/**
|
|
599
|
* @return
|
|
600
|
* @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getDerivedUnitUuidAndTitleCache()
|
|
601
|
*/
|
|
602
|
@Override
|
|
603
|
public List<UuidAndTitleCache<DerivedUnit>> getDerivedUnitUuidAndTitleCache() {
|
|
604
|
return defaultService.getDerivedUnitUuidAndTitleCache();
|
|
605
|
}
|
|
606
|
|
|
607
|
/**
|
|
608
|
* @param transientObject
|
|
609
|
* @return
|
|
610
|
* @see eu.etaxonomy.cdm.api.service.IService#merge(eu.etaxonomy.cdm.model.common.ICdmBase)
|
|
611
|
*/
|
|
612
|
@Override
|
|
613
|
public SpecimenOrObservationBase merge(SpecimenOrObservationBase transientObject) {
|
|
614
|
return defaultService.merge(transientObject);
|
|
615
|
}
|
|
616
|
|
|
617
|
/**
|
|
618
|
* @param derivedUnit
|
|
619
|
* @param propertyPaths
|
|
620
|
* @return
|
|
621
|
* @throws DerivedUnitFacadeNotSupportedException
|
|
622
|
* @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getDerivedUnitFacade(eu.etaxonomy.cdm.model.occurrence.DerivedUnit, java.util.List)
|
|
623
|
*/
|
|
624
|
@Override
|
|
625
|
public DerivedUnitFacade getDerivedUnitFacade(DerivedUnit derivedUnit, List<String> propertyPaths) throws DerivedUnitFacadeNotSupportedException {
|
|
626
|
return defaultService.getDerivedUnitFacade(derivedUnit, propertyPaths);
|
|
627
|
}
|
|
628
|
|
|
629
|
/**
|
|
630
|
* @param clazz
|
|
631
|
* @param queryString
|
|
632
|
* @param matchmode
|
|
633
|
* @param criteria
|
|
634
|
* @param pageSize
|
|
635
|
* @param pageNumber
|
|
636
|
* @param orderHints
|
|
637
|
* @param propertyPaths
|
|
638
|
* @return
|
|
639
|
* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#listByTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
640
|
*/
|
|
641
|
@Override
|
|
642
|
public List<SpecimenOrObservationBase> listByTitle(Class<? extends SpecimenOrObservationBase> clazz, String queryString, MatchMode matchmode, List<Criterion> criteria, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
|
|
643
|
return defaultService.listByTitle(clazz, queryString, matchmode, criteria, pageSize, pageNumber, orderHints, propertyPaths);
|
|
644
|
}
|
|
645
|
|
|
646
|
/**
|
|
647
|
* @param description
|
|
648
|
* @param propertyPaths
|
|
649
|
* @return
|
|
650
|
* @see eu.etaxonomy.cdm.api.service.IOccurrenceService#listDerivedUnitFacades(eu.etaxonomy.cdm.model.description.DescriptionBase, java.util.List)
|
|
651
|
*/
|
|
652
|
@Override
|
|
653
|
public List<DerivedUnitFacade> listDerivedUnitFacades(DescriptionBase description, List<String> propertyPaths) {
|
|
654
|
return defaultService.listDerivedUnitFacades(description, propertyPaths);
|
|
655
|
}
|
|
656
|
|
|
657
|
/**
|
|
658
|
* @param type
|
|
659
|
* @param pageSize
|
|
660
|
* @param pageNumber
|
|
661
|
* @param orderHints
|
|
662
|
* @param propertyPaths
|
|
663
|
* @return
|
|
664
|
* @see eu.etaxonomy.cdm.api.service.IService#page(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
665
|
*/
|
|
666
|
@Override
|
|
667
|
public <S extends SpecimenOrObservationBase> Pager<S> page(Class<S> type, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
|
|
668
|
return defaultService.page(type, pageSize, pageNumber, orderHints, propertyPaths);
|
|
669
|
}
|
|
670
|
|
|
671
|
/**
|
|
672
|
* @param type
|
|
673
|
* @param includeRelationships
|
|
674
|
* @param associatedTaxon
|
|
675
|
* @param maxDepth
|
|
676
|
* @param pageSize
|
|
677
|
* @param pageNumber
|
|
678
|
* @param orderHints
|
|
679
|
* @param propertyPaths
|
|
680
|
* @return
|
|
681
|
* @see eu.etaxonomy.cdm.api.service.IOccurrenceService#listByAssociatedTaxon(java.lang.Class, java.util.Set, eu.etaxonomy.cdm.model.taxon.Taxon, java.lang.Integer, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
682
|
*/
|
|
683
|
@Override
|
|
684
|
public <T extends SpecimenOrObservationBase> List<T> listByAssociatedTaxon(Class<T> type, Set<TaxonRelationshipEdge> includeRelationships, Taxon associatedTaxon, Integer maxDepth, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
|
|
685
|
return defaultService.listByAssociatedTaxon(type, includeRelationships, associatedTaxon, maxDepth, pageSize, pageNumber, orderHints, propertyPaths);
|
|
686
|
}
|
|
687
|
|
|
688
|
/**
|
|
689
|
* @param persistentObject
|
|
690
|
* @return
|
|
691
|
* @see eu.etaxonomy.cdm.api.service.IService#refresh(eu.etaxonomy.cdm.model.common.ICdmBase)
|
|
692
|
*/
|
|
693
|
@Override
|
|
694
|
public UUID refresh(SpecimenOrObservationBase persistentObject) {
|
|
695
|
return defaultService.refresh(persistentObject);
|
|
696
|
}
|
|
697
|
|
|
698
|
/**
|
|
699
|
* @param clazz
|
|
700
|
* @param queryString
|
|
701
|
* @param matchmode
|
|
702
|
* @param criteria
|
|
703
|
* @param pageSize
|
|
704
|
* @param pageNumber
|
|
705
|
* @param orderHints
|
|
706
|
* @param propertyPaths
|
|
707
|
* @return
|
|
708
|
* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#listByReferenceTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
709
|
*/
|
|
710
|
@Override
|
|
711
|
public List<SpecimenOrObservationBase> listByReferenceTitle(Class<? extends SpecimenOrObservationBase> clazz, String queryString, MatchMode matchmode, List<Criterion> criteria, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
|
|
712
|
return defaultService.listByReferenceTitle(clazz, queryString, matchmode, criteria, pageSize, pageNumber, orderHints, propertyPaths);
|
|
713
|
}
|
|
714
|
|
|
715
|
/**
|
|
716
|
* @param tableName
|
|
717
|
* @param limit
|
|
718
|
* @param start
|
|
719
|
* @return
|
|
720
|
* @see eu.etaxonomy.cdm.api.service.IService#rows(java.lang.String, int, int)
|
|
721
|
*/
|
|
722
|
@Override
|
|
723
|
public List<SpecimenOrObservationBase> rows(String tableName, int limit, int start) {
|
|
724
|
return defaultService.rows(tableName, limit, start);
|
|
725
|
}
|
|
726
|
|
|
727
|
/**
|
|
728
|
* @param newInstances
|
|
729
|
* @return
|
|
730
|
* @see eu.etaxonomy.cdm.api.service.IService#save(java.util.Collection)
|
|
731
|
*/
|
|
732
|
@Override
|
|
733
|
public Map<UUID, SpecimenOrObservationBase> save(Collection<SpecimenOrObservationBase> newInstances) {
|
|
734
|
for(SpecimenOrObservationBase unit:newInstances){
|
|
735
|
save(unit);
|
|
736
|
}
|
|
737
|
return null;
|
|
738
|
}
|
|
739
|
|
|
740
|
/**
|
|
741
|
* @param type
|
|
742
|
* @param includeRelationships
|
|
743
|
* @param associatedTaxon
|
|
744
|
* @param maxDepth
|
|
745
|
* @param pageSize
|
|
746
|
* @param pageNumber
|
|
747
|
* @param orderHints
|
|
748
|
* @param propertyPaths
|
|
749
|
* @return
|
|
750
|
* @see eu.etaxonomy.cdm.api.service.IOccurrenceService#pageByAssociatedTaxon(java.lang.Class, java.util.Set, eu.etaxonomy.cdm.model.taxon.Taxon, java.lang.Integer, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
751
|
*/
|
|
752
|
@Override
|
|
753
|
public <T extends SpecimenOrObservationBase> Pager<T> pageByAssociatedTaxon(Class<T> type, Set<TaxonRelationshipEdge> includeRelationships, Taxon associatedTaxon, Integer maxDepth, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
|
|
754
|
return defaultService.pageByAssociatedTaxon(type, includeRelationships, associatedTaxon, maxDepth, pageSize, pageNumber, orderHints, propertyPaths);
|
|
755
|
}
|
|
756
|
|
|
757
|
/**
|
|
758
|
* @param newInstance
|
|
759
|
* @return
|
|
760
|
* @see eu.etaxonomy.cdm.api.service.IService#save(eu.etaxonomy.cdm.model.common.ICdmBase)
|
|
761
|
*/
|
|
762
|
@Override
|
|
763
|
public UUID save(SpecimenOrObservationBase newInstance) {
|
|
764
|
units.add(newInstance);
|
|
765
|
return null;
|
|
766
|
}
|
|
767
|
|
|
768
|
/**
|
|
769
|
* @param transientObject
|
|
770
|
* @return
|
|
771
|
* @see eu.etaxonomy.cdm.api.service.IService#saveOrUpdate(eu.etaxonomy.cdm.model.common.ICdmBase)
|
|
772
|
*/
|
|
773
|
@Override
|
|
774
|
public UUID saveOrUpdate(SpecimenOrObservationBase transientObject) {
|
|
775
|
units.add(transientObject);
|
|
776
|
return null;
|
|
777
|
}
|
|
778
|
|
|
779
|
/**
|
|
780
|
* @param transientObjects
|
|
781
|
* @return
|
|
782
|
* @see eu.etaxonomy.cdm.api.service.IService#saveOrUpdate(java.util.Collection)
|
|
783
|
*/
|
|
784
|
@Override
|
|
785
|
public Map<UUID, SpecimenOrObservationBase> saveOrUpdate(Collection<SpecimenOrObservationBase> transientObjects) {
|
|
786
|
for(SpecimenOrObservationBase unit:transientObjects){
|
|
787
|
saveOrUpdate(unit);
|
|
788
|
}
|
|
789
|
return null;
|
|
790
|
}
|
|
791
|
|
|
792
|
/**
|
|
793
|
* @param clazz
|
|
794
|
* @param queryString
|
|
795
|
* @param boundingBox
|
|
796
|
* @param languages
|
|
797
|
* @param highlightFragments
|
|
798
|
* @param pageSize
|
|
799
|
* @param pageNumber
|
|
800
|
* @param orderHints
|
|
801
|
* @param propertyPaths
|
|
802
|
* @return
|
|
803
|
* @throws CorruptIndexException
|
|
804
|
* @throws IOException
|
|
805
|
* @throws ParseException
|
|
806
|
* @see eu.etaxonomy.cdm.api.service.IOccurrenceService#findByFullText(java.lang.Class, java.lang.String, org.hibernate.search.spatial.impl.Rectangle, java.util.List, boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
807
|
*/
|
|
808
|
@Override
|
|
809
|
public Pager<SearchResult<SpecimenOrObservationBase>> findByFullText(Class<? extends SpecimenOrObservationBase> clazz, String queryString, Rectangle boundingBox, List<Language> languages, boolean highlightFragments, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) throws CorruptIndexException, IOException, ParseException {
|
|
810
|
return defaultService.findByFullText(clazz, queryString, boundingBox, languages, highlightFragments, pageSize, pageNumber, orderHints, propertyPaths);
|
|
811
|
}
|
|
812
|
|
|
813
|
/**
|
|
814
|
* @param transientObject
|
|
815
|
* @return
|
|
816
|
* @see eu.etaxonomy.cdm.api.service.IService#update(eu.etaxonomy.cdm.model.common.ICdmBase)
|
|
817
|
*/
|
|
818
|
@Override
|
|
819
|
public UUID update(SpecimenOrObservationBase transientObject) {
|
|
820
|
return defaultService.update(transientObject);
|
|
821
|
}
|
|
822
|
|
|
823
|
/**
|
|
824
|
* @param example
|
|
825
|
* @param includeProperties
|
|
826
|
* @param limit
|
|
827
|
* @param start
|
|
828
|
* @param orderHints
|
|
829
|
* @param propertyPaths
|
|
830
|
* @return
|
|
831
|
* @see eu.etaxonomy.cdm.api.service.IService#list(eu.etaxonomy.cdm.model.common.ICdmBase, java.util.Set, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
832
|
*/
|
|
833
|
@Override
|
|
834
|
public List<SpecimenOrObservationBase> list(SpecimenOrObservationBase example, Set<String> includeProperties, Integer limit, Integer start, List<OrderHint> orderHints, List<String> propertyPaths) {
|
|
835
|
return defaultService.list(example, includeProperties, limit, start, orderHints, propertyPaths);
|
|
836
|
}
|
|
837
|
|
|
838
|
/**
|
|
839
|
* @param clazz
|
|
840
|
* @param matchStrategy
|
|
841
|
* @param mergeStrategy
|
|
842
|
* @return
|
|
843
|
* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#deduplicate(java.lang.Class, eu.etaxonomy.cdm.strategy.match.IMatchStrategy, eu.etaxonomy.cdm.strategy.merge.IMergeStrategy)
|
|
844
|
*/
|
|
845
|
@Override
|
|
846
|
public int deduplicate(Class<? extends SpecimenOrObservationBase> clazz, IMatchStrategy matchStrategy, IMergeStrategy mergeStrategy) {
|
|
847
|
return defaultService.deduplicate(clazz, matchStrategy, mergeStrategy);
|
|
848
|
}
|
|
849
|
|
|
850
|
/**
|
|
851
|
* @param clazz
|
|
852
|
* @param queryString
|
|
853
|
* @param pageSize
|
|
854
|
* @param pageNumber
|
|
855
|
* @param orderHints
|
|
856
|
* @param matchMode
|
|
857
|
* @return
|
|
858
|
* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#findTitleCache(java.lang.Class, java.lang.String, java.lang.Integer, java.lang.Integer, java.util.List, eu.etaxonomy.cdm.persistence.query.MatchMode)
|
|
859
|
*/
|
|
860
|
@Override
|
|
861
|
public Pager<SpecimenOrObservationBase> findTitleCache(Class<? extends SpecimenOrObservationBase> clazz, String queryString, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, MatchMode matchMode) {
|
|
862
|
return defaultService.findTitleCache(clazz, queryString, pageSize, pageNumber, orderHints, matchMode);
|
|
863
|
}
|
|
864
|
|
|
865
|
/**
|
|
866
|
* @return
|
|
867
|
*/
|
|
868
|
public Collection<SpecimenOrObservationBase<?>> getUnits() {
|
|
869
|
return units;
|
|
870
|
}
|
|
871
|
|
|
872
|
/* (non-Javadoc)
|
|
873
|
* @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getFieldUnits(java.util.UUID)
|
|
874
|
*/
|
|
875
|
@Override
|
|
876
|
public Collection<FieldUnit> getFieldUnits(UUID derivedUnitUuid) {
|
|
877
|
return defaultService.getFieldUnits(derivedUnitUuid);
|
|
878
|
}
|
|
879
|
|
|
880
|
/* (non-Javadoc)
|
|
881
|
* @see eu.etaxonomy.cdm.api.service.IOccurrenceService#pageByAssociatedTaxon(java.lang.Class, java.util.Set, java.lang.String, java.lang.Integer, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
882
|
*/
|
|
883
|
@Override
|
|
884
|
public <T extends SpecimenOrObservationBase> Pager<T> pageByAssociatedTaxon(Class<T> type,
|
|
885
|
Set<TaxonRelationshipEdge> includeRelationships, String taxonUUID, Integer maxDepth, Integer pageSize,
|
|
886
|
Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
|
|
887
|
return defaultService.pageByAssociatedTaxon(type, includeRelationships, taxonUUID,
|
|
888
|
maxDepth, pageSize, pageNumber, orderHints, propertyPaths);
|
|
889
|
}
|
|
890
|
|
|
891
|
/* (non-Javadoc)
|
|
892
|
* @see eu.etaxonomy.cdm.api.service.IOccurrenceService#moveDerivate(eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, eu.etaxonomy.cdm.model.occurrence.DerivedUnit)
|
|
893
|
*/
|
|
894
|
@Override
|
|
895
|
public boolean moveDerivate(SpecimenOrObservationBase<?> from, SpecimenOrObservationBase<?> to, DerivedUnit derivate) {
|
|
896
|
return defaultService.moveDerivate(from, to, derivate);
|
|
897
|
}
|
|
898
|
|
|
899
|
/* (non-Javadoc)
|
|
900
|
* @see eu.etaxonomy.cdm.api.service.IOccurrenceService#moveSequence(eu.etaxonomy.cdm.model.molecular.DnaSample, eu.etaxonomy.cdm.model.molecular.DnaSample, eu.etaxonomy.cdm.model.molecular.Sequence)
|
|
901
|
*/
|
|
902
|
@Override
|
|
903
|
public boolean moveSequence(DnaSample from, DnaSample to, Sequence sequence) {
|
|
904
|
return defaultService.moveSequence(from, to, sequence);
|
|
905
|
}
|
|
906
|
|
|
907
|
@Override
|
|
908
|
public DeleteResult isDeletable(SpecimenOrObservationBase object,
|
|
909
|
DeleteConfiguratorBase config) {
|
|
910
|
return defaultService.isDeletable(object, config);
|
|
911
|
}
|
|
912
|
|
|
913
|
/* (non-Javadoc)
|
|
914
|
* @see eu.etaxonomy.cdm.api.service.IOccurrenceService#countDeterminations(eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, eu.etaxonomy.cdm.model.taxon.TaxonBase)
|
|
915
|
*/
|
|
916
|
@Override
|
|
917
|
public int countDeterminations(SpecimenOrObservationBase occurence, TaxonBase taxonbase) {
|
|
918
|
return defaultService.countDeterminations(occurence, taxonbase);
|
|
919
|
}
|
|
920
|
|
|
921
|
@Override
|
|
922
|
public SpecimenOrObservationBase findWithoutFlush(UUID uuid) {
|
|
923
|
return defaultService.findWithoutFlush(uuid);
|
|
924
|
}
|
|
925
|
|
|
926
|
/* (non-Javadoc)
|
|
927
|
* @see eu.etaxonomy.cdm.api.service.IOccurrenceService#listFieldUnitsByAssociatedTaxon(java.util.Set, eu.etaxonomy.cdm.model.taxon.Taxon, java.lang.Integer, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
928
|
*/
|
|
929
|
@Override
|
|
930
|
public Collection<FieldUnit> listFieldUnitsByAssociatedTaxon(Set<TaxonRelationshipEdge> includeRelationships,
|
|
931
|
Taxon associatedTaxon, Integer maxDepth, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints,
|
|
932
|
List<String> propertyPaths) {
|
|
933
|
return defaultService.listFieldUnitsByAssociatedTaxon(includeRelationships, associatedTaxon, maxDepth, pageSize, pageNumber, orderHints, propertyPaths);
|
|
934
|
}
|
|
935
|
|
|
936
|
/* (non-Javadoc)
|
|
937
|
* @see eu.etaxonomy.cdm.api.service.IOccurrenceService#assembleDerivateHierarchyDTO(eu.etaxonomy.cdm.model.occurrence.FieldUnit, java.util.UUID)
|
|
938
|
*/
|
|
939
|
@Override
|
|
940
|
public DerivateHierarchyDTO assembleDerivateHierarchyDTO(FieldUnit fieldUnit, UUID associatedTaxonUuid) {
|
|
941
|
return defaultService.assembleDerivateHierarchyDTO(fieldUnit, associatedTaxonUuid);
|
|
942
|
}
|
|
943
|
|
|
944
|
/* (non-Javadoc)
|
|
945
|
* @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getNonCascadedAssociatedElements(eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, eu.etaxonomy.cdm.api.conversation.ConversationHolder)
|
|
946
|
*/
|
|
947
|
@Override
|
|
948
|
public Collection<ICdmBase> getNonCascadedAssociatedElements(SpecimenOrObservationBase<?> specimen) {
|
|
949
|
return defaultService.getNonCascadedAssociatedElements(specimen);
|
|
950
|
}
|
|
951
|
|
|
952
|
/* (non-Javadoc)
|
|
953
|
* @see eu.etaxonomy.cdm.api.service.IOccurrenceService#deleteDerivateHierarchy(eu.etaxonomy.cdm.model.common.ICdmBase)
|
|
954
|
*/
|
|
955
|
@Override
|
|
956
|
public DeleteResult deleteDerivateHierarchy(CdmBase from, SpecimenDeleteConfigurator config) {
|
|
957
|
return defaultService.deleteDerivateHierarchy(from, config);
|
|
958
|
}
|
|
959
|
|
|
960
|
/* (non-Javadoc)
|
|
961
|
* @see eu.etaxonomy.cdm.api.service.IOccurrenceService#delete(eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, eu.etaxonomy.cdm.api.service.config.SpecimenDeleteConfigurator)
|
|
962
|
*/
|
|
963
|
@Override
|
|
964
|
public DeleteResult delete(SpecimenOrObservationBase<?> specimen, SpecimenDeleteConfigurator config) {
|
|
965
|
return defaultService.delete(specimen, config);
|
|
966
|
}
|
|
967
|
|
|
968
|
/* (non-Javadoc)
|
|
969
|
* @see eu.etaxonomy.cdm.api.service.IOccurrenceService#listIndividualsAssociations(eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
970
|
*/
|
|
971
|
@Override
|
|
972
|
public Collection<IndividualsAssociation> listIndividualsAssociations(SpecimenOrObservationBase<?> specimen,
|
|
973
|
Integer limit, Integer start, List<OrderHint> orderHints, List<String> propertyPaths) {
|
|
974
|
return defaultService.listIndividualsAssociations(specimen, limit, start, orderHints, propertyPaths);
|
|
975
|
}
|
|
976
|
|
|
977
|
/* (non-Javadoc)
|
|
978
|
* @see eu.etaxonomy.cdm.api.service.IOccurrenceService#listTypeDesignations(eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
979
|
*/
|
|
980
|
@Override
|
|
981
|
public Collection<SpecimenTypeDesignation> listTypeDesignations(SpecimenOrObservationBase<?> specimen,
|
|
982
|
Integer limit, Integer start, List<OrderHint> orderHints, List<String> propertyPaths) {
|
|
983
|
return defaultService.listTypeDesignations(specimen, limit, start, orderHints, propertyPaths);
|
|
984
|
}
|
|
985
|
|
|
986
|
/* (non-Javadoc)
|
|
987
|
* @see eu.etaxonomy.cdm.api.service.IOccurrenceService#listDescriptionsWithDescriptionSpecimen(eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
|
988
|
*/
|
|
989
|
@Override
|
|
990
|
public Collection<DescriptionBase<?>> listDescriptionsWithDescriptionSpecimen(
|
|
991
|
SpecimenOrObservationBase<?> specimen, Integer limit, Integer start, List<OrderHint> orderHints,
|
|
992
|
List<String> propertyPaths) {
|
|
993
|
return defaultService.listDescriptionsWithDescriptionSpecimen(specimen, limit, start, orderHints, propertyPaths);
|
|
994
|
}
|
|
995
|
|
|
996
|
@Override
|
|
997
|
public <S extends SpecimenOrObservationBase> Pager<FindByIdentifierDTO<S>> findByIdentifier(Class<S> clazz, String identifier, DefinedTerm identifierType, MatchMode matchmode, boolean includeEntity, Integer pageSize, Integer pageNumber, List<String> propertyPaths){
|
|
998
|
return defaultService.findByIdentifier(clazz, identifier, identifierType, matchmode, includeEntity, pageSize, pageNumber, propertyPaths);
|
|
999
|
}
|
|
1000
|
|
|
1001
|
}
|