Revision 61650dda
Added by Patrick Plitzner over 6 years ago
| eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/handler/ExportSequenceToFileHandler.java | ||
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package eu.etaxonomy.taxeditor.molecular.handler; |
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import info.bioinfweb.jphyloio.JPhyloIOEventWriter; |
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import info.bioinfweb.jphyloio.ReadWriteParameterMap; |
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import info.bioinfweb.jphyloio.ReadWriteParameterNames; |
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import info.bioinfweb.jphyloio.dataadapters.implementations.ListBasedDocumentDataAdapter; |
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import info.bioinfweb.jphyloio.factory.JPhyloIOReaderWriterFactory; |
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import info.bioinfweb.jphyloio.objecttranslation.ObjectTranslatorFactory; |
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import java.io.File; |
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import java.io.IOException; |
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import org.eclipse.core.commands.AbstractHandler; |
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import org.eclipse.core.commands.ExecutionEvent; |
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import org.eclipse.core.commands.ExecutionException; |
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import javax.inject.Named; |
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import org.eclipse.core.runtime.IStatus; |
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import org.eclipse.jface.viewers.ISelection; |
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import org.eclipse.e4.core.di.annotations.Execute; |
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import org.eclipse.e4.core.di.annotations.Optional; |
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import org.eclipse.e4.ui.services.IServiceConstants; |
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import org.eclipse.jface.viewers.TreeNode; |
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import org.eclipse.jface.wizard.WizardDialog; |
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import org.eclipse.ui.handlers.HandlerUtil;
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import org.eclipse.swt.widgets.Shell;
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import eu.etaxonomy.cdm.model.molecular.Sequence; |
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import eu.etaxonomy.taxeditor.editor.EditorUtil; |
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import eu.etaxonomy.taxeditor.model.MessagingUtils; |
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import eu.etaxonomy.taxeditor.molecular.TaxeditorMolecularPlugin; |
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import eu.etaxonomy.taxeditor.molecular.io.CDMPherogramAlignmentObjectTranslator; |
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import eu.etaxonomy.taxeditor.molecular.io.wizard.ExportSingleReadAlignmentWizard; |
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import eu.etaxonomy.taxeditor.molecular.l10n.Messages; |
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import eu.etaxonomy.taxeditor.util.ApplicationUtil; |
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import info.bioinfweb.jphyloio.JPhyloIOEventWriter; |
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import info.bioinfweb.jphyloio.ReadWriteParameterMap; |
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import info.bioinfweb.jphyloio.ReadWriteParameterNames; |
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import info.bioinfweb.jphyloio.dataadapters.implementations.ListBasedDocumentDataAdapter; |
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import info.bioinfweb.jphyloio.factory.JPhyloIOReaderWriterFactory; |
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import info.bioinfweb.jphyloio.objecttranslation.ObjectTranslatorFactory; |
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* @author Ben Stöver |
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* @date 24.04.2016 |
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*/ |
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public class ExportSequenceToFileHandler extends AbstractHandler {
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public class ExportSequenceToFileHandler {
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private static final JPhyloIOReaderWriterFactory factory = new JPhyloIOReaderWriterFactory(); |
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@Override |
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public Object execute(ExecutionEvent event) throws ExecutionException {
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ISelection currentSelection = HandlerUtil.getCurrentSelection(event); |
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TreeNode treeNodeOfSelection = EditorUtil.getTreeNodeOfSelection(currentSelection); |
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@Execute |
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public Object execute(@Optional@Named(IServiceConstants.ACTIVE_SELECTION)TreeNode treeNodeOfSelection, |
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@Named(IServiceConstants.ACTIVE_SHELL)Shell shell) {
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if (treeNodeOfSelection != null && treeNodeOfSelection.getValue() instanceof Sequence) {
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Sequence sequence = (Sequence)treeNodeOfSelection.getValue(); |
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final ExportSingleReadAlignmentWizard wizard = new ExportSingleReadAlignmentWizard(); |
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final WizardDialog dialog = new WizardDialog(HandlerUtil.getActiveShell(event), wizard);
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final WizardDialog dialog = new WizardDialog(shell, wizard);
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if (dialog.open() == IStatus.OK) {
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// Prepare writer parameters: |
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ReadWriteParameterMap parameters = new ReadWriteParameterMap(); |
Also available in: Unified diff
ref #6902 migrate remaining context menu items for molecular module