Revision 5d4927e5
Added by Patrick Plitzner over 8 years ago
| eu.etaxonomy.taxeditor.molecular.lib/.classpath | ||
|---|---|---|
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<?xml version="1.0" encoding="UTF-8"?> |
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<classpath> |
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<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER"/> |
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<classpathentry kind="con" path="org.eclipse.pde.core.requiredPlugins"/> |
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<classpathentry exported="true" kind="lib" path="lib/bioinfweb-commons-bio-2-SNAPSHOT.jar"/> |
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<classpathentry exported="true" kind="lib" path="lib/bioinfweb-commons-core-2-SNAPSHOT.jar"/> |
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<classpathentry exported="true" kind="lib" path="lib/bioinfweb-commons-swing-2-SNAPSHOT.jar"/> |
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<classpathentry exported="true" kind="lib" path="lib/bioinfweb-commons-swt-2-SNAPSHOT.jar"/> |
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<classpathentry exported="true" kind="lib" path="lib/core-1.9.2-SNAPSHOT.jar"/> |
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<classpathentry exported="true" kind="lib" path="lib/libralign-biojava1-0-SNAPSHOT.jar"/> |
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<classpathentry exported="true" kind="lib" path="lib/libralign-core-0-SNAPSHOT.jar"/> |
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<classpathentry exported="true" kind="lib" path="lib/libralign-swt-0-SNAPSHOT.jar"/> |
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<classpathentry exported="true" kind="lib" path="lib/sequencing-1.9.2-SNAPSHOT.jar"/> |
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<classpathentry exported="true" kind="lib" path="lib/tic-core-2-SNAPSHOT.jar"/> |
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<classpathentry exported="true" kind="lib" path="lib/tic-swt-2-SNAPSHOT.jar"/> |
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<classpathentry kind="output" path="target/classes"/> |
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</classpath> |
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| eu.etaxonomy.taxeditor.molecular.lib/.gitignore | ||
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/target |
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.settings/ |
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| eu.etaxonomy.taxeditor.molecular.lib/.project | ||
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<?xml version="1.0" encoding="UTF-8"?> |
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<projectDescription> |
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<name>eu.etaxonomy.taxeditor.molecular.lib</name> |
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<comment>The Taxonomic Editor for EDIT's platform for |
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cybertaxonomy. NO_M2ECLIPSE_SUPPORT: Project files created with the maven-eclipse-plugin are not supported in M2Eclipse.</comment> |
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<projects> |
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</projects> |
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<buildSpec> |
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<buildCommand> |
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<name>org.eclipse.pde.ManifestBuilder</name> |
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<arguments> |
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</arguments> |
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</buildCommand> |
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<buildCommand> |
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<name>org.eclipse.pde.SchemaBuilder</name> |
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<arguments> |
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</arguments> |
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</buildCommand> |
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<buildCommand> |
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<name>org.eclipse.jdt.core.javabuilder</name> |
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<arguments> |
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</arguments> |
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</buildCommand> |
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</buildSpec> |
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<natures> |
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<nature>org.eclipse.pde.PluginNature</nature> |
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<nature>org.eclipse.jdt.core.javanature</nature> |
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</natures> |
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</projectDescription> |
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| eu.etaxonomy.taxeditor.molecular.lib/META-INF/MANIFEST.MF | ||
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Manifest-Version: 1.0 |
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Bundle-ManifestVersion: 2 |
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Bundle-Name: eu.etaxonomy.taxeditor.molecular.lib |
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Bundle-SymbolicName: eu.etaxonomy.taxeditor.molecular.lib;singleton:=true |
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Bundle-Version: 3.8.0.qualifier |
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Bundle-ClassPath: ., |
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lib/bioinfweb-commons-bio-2-SNAPSHOT.jar, |
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lib/bioinfweb-commons-core-2-SNAPSHOT.jar, |
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lib/bioinfweb-commons-swing-2-SNAPSHOT.jar, |
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lib/bioinfweb-commons-swt-2-SNAPSHOT.jar, |
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lib/core-1.9.2-SNAPSHOT.jar, |
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lib/libralign-biojava1-0-SNAPSHOT.jar, |
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lib/libralign-core-0-SNAPSHOT.jar, |
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lib/libralign-swt-0-SNAPSHOT.jar, |
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lib/sequencing-1.9.2-SNAPSHOT.jar, |
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lib/tic-core-2-SNAPSHOT.jar, |
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lib/tic-swt-2-SNAPSHOT.jar |
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Export-Package: info.bioinfweb.commons, |
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info.bioinfweb.commons.appversion, |
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info.bioinfweb.commons.beans, |
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info.bioinfweb.commons.bio, |
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| 22 |
info.bioinfweb.commons.changemonitor, |
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| 23 |
info.bioinfweb.commons.collections, |
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info.bioinfweb.commons.collections.observable, |
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info.bioinfweb.commons.graphics, |
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info.bioinfweb.commons.io, |
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info.bioinfweb.commons.log, |
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info.bioinfweb.commons.progress, |
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info.bioinfweb.commons.swing, |
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info.bioinfweb.commons.swing.scrollpaneselector, |
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info.bioinfweb.commons.swt, |
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info.bioinfweb.commons.text, |
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| 33 |
info.bioinfweb.libralign, |
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info.bioinfweb.libralign.actions, |
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| 35 |
info.bioinfweb.libralign.alignmentarea, |
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| 36 |
info.bioinfweb.libralign.alignmentarea.content, |
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| 37 |
info.bioinfweb.libralign.alignmentarea.label, |
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| 38 |
info.bioinfweb.libralign.alignmentarea.order, |
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| 39 |
info.bioinfweb.libralign.alignmentarea.paintsettings, |
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| 40 |
info.bioinfweb.libralign.alignmentarea.rowsarea, |
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| 41 |
info.bioinfweb.libralign.alignmentarea.selection, |
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| 42 |
info.bioinfweb.libralign.alignmentarea.tokenpainter, |
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| 43 |
info.bioinfweb.libralign.dataarea, |
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| 44 |
info.bioinfweb.libralign.dataarea.implementations, |
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| 45 |
info.bioinfweb.libralign.dataarea.implementations.charset, |
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| 46 |
info.bioinfweb.libralign.dataarea.implementations.pherogram, |
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| 47 |
info.bioinfweb.libralign.editsettings, |
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| 48 |
info.bioinfweb.libralign.model, |
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| 49 |
info.bioinfweb.libralign.model.adapters, |
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| 50 |
info.bioinfweb.libralign.model.concatenated, |
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| 51 |
info.bioinfweb.libralign.model.data, |
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| 52 |
info.bioinfweb.libralign.model.events, |
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| 53 |
info.bioinfweb.libralign.model.exception, |
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| 54 |
info.bioinfweb.libralign.model.factory, |
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| 55 |
info.bioinfweb.libralign.model.factory.continuous, |
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| 56 |
info.bioinfweb.libralign.model.implementations, |
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info.bioinfweb.libralign.model.implementations.swingundo, |
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info.bioinfweb.libralign.model.implementations.swingundo.edits, |
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| 59 |
info.bioinfweb.libralign.model.implementations.swingundo.edits.sequence, |
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info.bioinfweb.libralign.model.implementations.swingundo.edits.token, |
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info.bioinfweb.libralign.model.implementations.translation, |
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info.bioinfweb.libralign.model.tokenset, |
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info.bioinfweb.libralign.model.tokenset.continuous, |
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info.bioinfweb.libralign.multiplealignments, |
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info.bioinfweb.libralign.pherogram, |
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info.bioinfweb.libralign.pherogram.distortion, |
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info.bioinfweb.libralign.pherogram.model, |
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info.bioinfweb.libralign.pherogram.provider, |
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info.bioinfweb.libralign.pherogram.view, |
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info.bioinfweb.tic, |
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info.bioinfweb.tic.exception, |
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info.bioinfweb.tic.input, |
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info.bioinfweb.tic.toolkit, |
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info.bioinfweb.tic.toolkit.layoutdata, |
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org.biojava.bibliography, |
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org.biojava.bio, |
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org.biojava.bio.alignment, |
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org.biojava.bio.annodb, |
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org.biojava.bio.chromatogram, |
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org.biojava.bio.chromatogram.graphic, |
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org.biojava.bio.dist, |
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org.biojava.bio.dp, |
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org.biojava.bio.dp.onehead, |
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org.biojava.bio.dp.twohead, |
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org.biojava.bio.molbio, |
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org.biojava.bio.program, |
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org.biojava.bio.program.abi, |
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org.biojava.bio.program.blast2html, |
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org.biojava.bio.program.fastq, |
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org.biojava.bio.program.formats, |
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org.biojava.bio.program.gff, |
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org.biojava.bio.program.gff3, |
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org.biojava.bio.program.hmmer, |
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org.biojava.bio.program.homologene, |
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org.biojava.bio.program.indexdb, |
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org.biojava.bio.program.phred, |
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org.biojava.bio.program.scf, |
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org.biojava.bio.program.ssaha, |
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org.biojava.bio.program.ssbind, |
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org.biojava.bio.program.tagvalue, |
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org.biojava.bio.program.unigene, |
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org.biojava.bio.program.xff, |
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org.biojava.bio.program.xml, |
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org.biojava.bio.proteomics, |
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org.biojava.bio.proteomics.aaindex, |
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org.biojava.bio.search, |
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org.biojava.bio.seq, |
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org.biojava.bio.seq.db, |
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org.biojava.bio.seq.db.biofetch, |
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org.biojava.bio.seq.db.emblcd, |
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org.biojava.bio.seq.db.flat, |
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org.biojava.bio.seq.distributed, |
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org.biojava.bio.seq.filter, |
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org.biojava.bio.seq.homol, |
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org.biojava.bio.seq.impl, |
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org.biojava.bio.seq.io, |
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org.biojava.bio.seq.io.agave, |
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org.biojava.bio.seq.io.filterxml, |
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org.biojava.bio.seq.io.game, |
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| 120 |
org.biojava.bio.seq.io.game12, |
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org.biojava.bio.seq.projection, |
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org.biojava.bio.symbol, |
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org.biojava.bio.taxa, |
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org.biojava.directory, |
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org.biojava.naming, |
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org.biojava.ontology, |
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| 127 |
org.biojava.ontology.io, |
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| 128 |
org.biojava.ontology.obo, |
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| 129 |
org.biojava.stats.svm, |
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| 130 |
org.biojava.stats.svm.tools, |
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| 131 |
org.biojava.utils, |
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| 132 |
org.biojava.utils.automata, |
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org.biojava.utils.cache, |
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| 134 |
org.biojava.utils.candy, |
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| 135 |
org.biojava.utils.io, |
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org.biojava.utils.lsid, |
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| 137 |
org.biojava.utils.math, |
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| 138 |
org.biojava.utils.net, |
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org.biojava.utils.process, |
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| 140 |
org.biojava.utils.regex, |
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| 141 |
org.biojava.utils.stax, |
|
| 142 |
org.biojava.utils.walker, |
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| 143 |
org.biojava.utils.xml, |
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| 144 |
org.biojavax, |
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| 145 |
org.biojavax.bio, |
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| 146 |
org.biojavax.bio.alignment, |
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| 147 |
org.biojavax.bio.alignment.blast, |
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| 148 |
org.biojavax.bio.db, |
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| 149 |
org.biojavax.bio.db.ncbi, |
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| 150 |
org.biojavax.bio.seq, |
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| 151 |
org.biojavax.bio.seq.io, |
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| 152 |
org.biojavax.bio.taxa, |
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| 153 |
org.biojavax.bio.taxa.io, |
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| 154 |
org.biojavax.ga, |
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| 155 |
org.biojavax.ga.exception, |
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| 156 |
org.biojavax.ga.functions, |
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| 157 |
org.biojavax.ga.impl, |
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| 158 |
org.biojavax.ga.util, |
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| 159 |
org.biojavax.ontology, |
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| 160 |
org.biojavax.utils, |
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org.jdesktop.swingx.scrollpaneselector |
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Bundle-ActivationPolicy: lazy |
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Import-Package: javax.swing |
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Require-Bundle: org.eclipse.swt |
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| eu.etaxonomy.taxeditor.molecular.lib/build.properties | ||
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bin.includes = META-INF/,\ |
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lib/bioinfweb-commons-bio-2-SNAPSHOT.jar,\ |
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lib/bioinfweb-commons-core-2-SNAPSHOT.jar,\ |
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lib/bioinfweb-commons-swing-2-SNAPSHOT.jar,\ |
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lib/bioinfweb-commons-swt-2-SNAPSHOT.jar,\ |
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lib/core-1.9.2-SNAPSHOT.jar,\ |
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lib/libralign-biojava1-0-SNAPSHOT.jar,\ |
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lib/libralign-core-0-SNAPSHOT.jar,\ |
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lib/libralign-swt-0-SNAPSHOT.jar,\ |
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lib/sequencing-1.9.2-SNAPSHOT.jar,\ |
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lib/tic-core-2-SNAPSHOT.jar,\ |
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lib/tic-swt-2-SNAPSHOT.jar |
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| eu.etaxonomy.taxeditor.molecular.lib/lib/.gitignore | ||
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| 1 |
/*.jar |
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| eu.etaxonomy.taxeditor.molecular.lib/pom.xml | ||
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<project> |
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<modelVersion>4.0.0</modelVersion> |
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<groupId>eu.etaxonomy.taxeditor</groupId> |
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<artifactId>eu.etaxonomy.taxeditor.molecular.lib</artifactId> |
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<packaging>eclipse-plugin</packaging> |
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|
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<parent> |
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<groupId>eu.etaxonomy</groupId> |
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<artifactId>taxeditor-parent</artifactId> |
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<version>3.8.0-SNAPSHOT</version> |
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</parent> |
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|
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<build> |
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<plugins> |
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<plugin> |
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<groupId>org.apache.maven.plugins</groupId> |
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<artifactId>maven-dependency-plugin</artifactId> |
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<version>2.4</version> |
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<executions> |
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<execution> |
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<id>copy-dependencies</id> |
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<phase>validate</phase> |
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<goals> |
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<goal>copy-dependencies</goal> |
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</goals> |
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<configuration> |
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<includeArtifactIds>libralign-swt, libralign-core, |
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bioinfweb-commons-swt, bioinfweb-commons-core, |
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bioinfweb-commons-bio, bioinfweb-commons-swing, |
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tic-core, libralign-biojava1, core, sequencing, tic-swt</includeArtifactIds> |
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<outputDirectory>lib</outputDirectory> |
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<overWriteReleases>true</overWriteReleases> |
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<overWriteSnapshots>true</overWriteSnapshots> |
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<excludeTransitive>true</excludeTransitive> |
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</configuration> |
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</execution> |
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<!-- <execution> --> |
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<!-- <id>copy-dependencies-sources</id> --> |
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<!-- <phase>validate</phase> --> |
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<!-- <goals> --> |
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<!-- <goal>copy-dependencies</goal> --> |
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<!-- </goals> --> |
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<!-- <configuration> --> |
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<!-- <classifier>sources</classifier> --> |
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<!-- <includeArtifactIds>cdmlib-commons,cdmlib-model,cdmlib-persistence,cdmlib-remote,cdmlib-print,cdmlib-services,cdmlib-ext,cdmlib-io</includeArtifactIds> --> |
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<!-- <outputDirectory>lib</outputDirectory> --> |
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<!-- <overWriteReleases>true</overWriteReleases> --> |
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<!-- <overWriteSnapshots>true</overWriteSnapshots> --> |
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<!-- <excludeTransitive>true</excludeTransitive> --> |
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<!-- <failOnMissingClassifierArtifact>false</failOnMissingClassifierArtifact> --> |
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<!-- </configuration> --> |
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<!-- </execution> --> |
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</executions> |
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</plugin> |
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<plugin> |
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<groupId>org.apache.maven.plugins</groupId> |
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<artifactId>maven-antrun-plugin</artifactId> |
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<version>1.7</version> |
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<executions> |
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<execution> |
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<id>remove-existing-jars</id> |
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<phase>clean</phase> |
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<goals> |
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<goal>run</goal> |
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</goals> |
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<configuration> |
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<target> |
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<echo>Remove all jars</echo> |
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<delete> |
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<fileset dir="./lib" includes="*" /> |
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</delete> |
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</target> |
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</configuration> |
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</execution> |
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<execution> |
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<id>update-snapshot-jar-names</id> |
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<phase>validate</phase> |
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<goals> |
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<goal>run</goal> |
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</goals> |
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<configuration> |
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<target> |
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<echo>Update jars to SNAPSHOT when build with |
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timestamp</echo> |
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<move todir="./lib"> |
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<fileset dir="./lib" /> |
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<mapper type="regexp" |
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from="(^bioinfweb\-.*\-[0-9]-)[0-9.-]+(\.jar)" to="\1SNAPSHOT\2" /> |
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</move> |
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<move todir="./lib"> |
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<fileset dir="./lib" /> |
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<mapper type="regexp" |
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from="(^libralign\-.*\-[0-9]-)[0-9.-]+(\.jar)" to="\1SNAPSHOT\2" /> |
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</move> |
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| 95 |
<move todir="./lib"> |
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<fileset dir="./lib" /> |
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<mapper type="regexp" |
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from="(^tic\-.*\-[0-9]-)[0-9.-]+(\.jar)" to="\1SNAPSHOT\2" /> |
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</move> |
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<move todir="./lib"> |
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<fileset dir="./lib" /> |
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<mapper type="regexp" |
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from="(^core\-[0-9]\.[0-9]\.[0-9])(\.jar)" to="\1-SNAPSHOT\2" /> |
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</move> |
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<move todir="./lib"> |
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<fileset dir="./lib" /> |
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<mapper type="regexp" |
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from="(^sequencing\-[0-9]\.[0-9]\.[0-9])(\.jar)" to="\1-SNAPSHOT\2" /> |
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</move> |
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</target> |
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</configuration> |
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</execution> |
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</executions> |
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</plugin> |
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</plugins> |
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</build> |
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|
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<dependencies> |
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<!-- LibrAling --> |
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<dependency> |
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| 121 |
<groupId>info.bioinfweb.libralign</groupId> |
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<artifactId>libralign-core</artifactId> |
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| 123 |
<version>0-SNAPSHOT</version> |
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| 124 |
</dependency> |
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| 125 |
<dependency> |
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| 126 |
<groupId>info.bioinfweb.libralign</groupId> |
|
| 127 |
<artifactId>libralign-swt</artifactId> |
|
| 128 |
<version>0-SNAPSHOT</version> |
|
| 129 |
</dependency> |
|
| 130 |
<dependency> |
|
| 131 |
<groupId>info.bioinfweb.libralign</groupId> |
|
| 132 |
<artifactId>libralign-biojava1</artifactId> |
|
| 133 |
<version>0-SNAPSHOT</version> |
|
| 134 |
</dependency> |
|
| 135 |
<!-- commons --> |
|
| 136 |
<dependency> |
|
| 137 |
<groupId>info.bioinfweb.commons.java</groupId> |
|
| 138 |
<artifactId>bioinfweb-commons-swt</artifactId> |
|
| 139 |
<version>2-SNAPSHOT</version> |
|
| 140 |
</dependency> |
|
| 141 |
<dependency> |
|
| 142 |
<groupId>info.bioinfweb.commons.java</groupId> |
|
| 143 |
<artifactId>bioinfweb-commons-core</artifactId> |
|
| 144 |
<version>2-SNAPSHOT</version> |
|
| 145 |
</dependency> |
|
| 146 |
<dependency> |
|
| 147 |
<groupId>info.bioinfweb.commons.java</groupId> |
|
| 148 |
<artifactId>bioinfweb-commons-bio</artifactId> |
|
| 149 |
<version>2-SNAPSHOT</version> |
|
| 150 |
</dependency> |
|
| 151 |
<dependency> |
|
| 152 |
<groupId>info.bioinfweb.commons.java</groupId> |
|
| 153 |
<artifactId>bioinfweb-commons-swing</artifactId> |
|
| 154 |
<version>2-SNAPSHOT</version> |
|
| 155 |
</dependency> |
|
| 156 |
<!-- tic --> |
|
| 157 |
<dependency> |
|
| 158 |
<groupId>info.bioinfweb.tic</groupId> |
|
| 159 |
<artifactId>tic-core</artifactId> |
|
| 160 |
<version>2-SNAPSHOT</version> |
|
| 161 |
</dependency> |
|
| 162 |
<dependency> |
|
| 163 |
<groupId>info.bioinfweb.tic</groupId> |
|
| 164 |
<artifactId>tic-swt</artifactId> |
|
| 165 |
<version>2-SNAPSHOT</version> |
|
| 166 |
</dependency> |
|
| 167 |
<!-- biojava --> |
|
| 168 |
<dependency> |
|
| 169 |
<groupId>org.biojava</groupId> |
|
| 170 |
<artifactId>core</artifactId> |
|
| 171 |
<version>1.9.2</version> |
|
| 172 |
</dependency> |
|
| 173 |
<dependency> |
|
| 174 |
<groupId>org.biojava</groupId> |
|
| 175 |
<artifactId>sequencing</artifactId> |
|
| 176 |
<version>1.9.2</version> |
|
| 177 |
</dependency> |
|
| 178 |
</dependencies> |
|
| 179 |
|
|
| 180 |
<repositories> |
|
| 181 |
<repository> |
|
| 182 |
<id>bioinfweb-maven-repo</id> |
|
| 183 |
<name>bioinfweb repository</name> |
|
| 184 |
<url>http://bioinfweb.info/MavenRepository/</url> |
|
| 185 |
</repository> |
|
| 186 |
</repositories> |
|
| 187 |
|
|
| 188 |
</project> |
|
| 189 |
|
|
| eu.etaxonomy.taxeditor.molecular/.classpath | ||
|---|---|---|
| 1 |
<?xml version="1.0" encoding="UTF-8"?> |
|
| 2 |
<classpath> |
|
| 3 |
<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.6"/> |
|
| 4 |
<classpathentry kind="con" path="org.eclipse.pde.core.requiredPlugins"/> |
|
| 5 |
<classpathentry including="**/*.java" kind="src" path="src/main/java"/> |
|
| 6 |
<classpathentry kind="output" path="target/classes"/> |
|
| 7 |
</classpath> |
|
| eu.etaxonomy.taxeditor.molecular/.gitignore | ||
|---|---|---|
| 1 |
/target |
|
| 2 |
.settings/ |
|
| eu.etaxonomy.taxeditor.molecular/.project | ||
|---|---|---|
| 1 |
<?xml version="1.0" encoding="UTF-8"?> |
|
| 2 |
<projectDescription> |
|
| 3 |
<name>eu.etaxonomy.taxeditor.molecular</name> |
|
| 4 |
<comment>Provides editors, views and operations for handling molecular data and alignments. NO_M2ECLIPSE_SUPPORT: Project files created with the maven-eclipse-plugin are not supported in M2Eclipse.</comment> |
|
| 5 |
<projects> |
|
| 6 |
</projects> |
|
| 7 |
<buildSpec> |
|
| 8 |
<buildCommand> |
|
| 9 |
<name>org.eclipse.jdt.core.javabuilder</name> |
|
| 10 |
<arguments> |
|
| 11 |
</arguments> |
|
| 12 |
</buildCommand> |
|
| 13 |
<buildCommand> |
|
| 14 |
<name>org.eclipse.pde.ManifestBuilder</name> |
|
| 15 |
<arguments> |
|
| 16 |
</arguments> |
|
| 17 |
</buildCommand> |
|
| 18 |
<buildCommand> |
|
| 19 |
<name>org.eclipse.pde.SchemaBuilder</name> |
|
| 20 |
<arguments> |
|
| 21 |
</arguments> |
|
| 22 |
</buildCommand> |
|
| 23 |
</buildSpec> |
|
| 24 |
<natures> |
|
| 25 |
<nature>org.eclipse.jdt.core.javanature</nature> |
|
| 26 |
<nature>org.eclipse.pde.PluginNature</nature> |
|
| 27 |
</natures> |
|
| 28 |
</projectDescription> |
|
| eu.etaxonomy.taxeditor.molecular/META-INF/MANIFEST.MF | ||
|---|---|---|
| 1 |
Manifest-Version: 1.0 |
|
| 2 |
Bundle-ManifestVersion: 2 |
|
| 3 |
Bundle-Name: Molecular Bundle |
|
| 4 |
Bundle-SymbolicName: eu.etaxonomy.taxeditor.molecular;singleton:=true |
|
| 5 |
Bundle-Version: 3.8.0.qualifier |
|
| 6 |
Bundle-Activator: eu.etaxonomy.taxeditor.molecular.TaxeditorMolecularPlugin |
|
| 7 |
Require-Bundle: org.eclipse.ui, |
|
| 8 |
org.eclipse.core.runtime, |
|
| 9 |
org.eclipse.core.expressions, |
|
| 10 |
org.eclipse.ui.ide, |
|
| 11 |
eu.etaxonomy.taxeditor.bulkeditor, |
|
| 12 |
eu.etaxonomy.taxeditor.cdmlib, |
|
| 13 |
eu.etaxonomy.taxeditor.editor, |
|
| 14 |
eu.etaxonomy.taxeditor.store, |
|
| 15 |
eu.etaxonomy.taxeditor.molecular.lib |
|
| 16 |
Bundle-RequiredExecutionEnvironment: JavaSE-1.6 |
|
| 17 |
Bundle-ActivationPolicy: lazy |
|
| 18 |
Bundle-Vendor: EDIT |
|
| eu.etaxonomy.taxeditor.molecular/OSGI-INF/l10n/plugin.properties | ||
|---|---|---|
| 1 |
#Properties file for taxeditor-editor |
|
| 2 |
Bundle-Vendor.0 = EDIT |
|
| 3 |
Bundle-Name.0 = EDIT Taxonomic Editor - Editor Bundle |
|
| 4 |
command.name.17 = Set Basionym |
|
| 5 |
command.name.18 = Remove Basionym |
|
| 6 |
editor.name = Multipage Taxon Editor |
|
| 7 |
editor.name.0 = Taxon Name Editor |
|
| 8 |
editor.name.1 = Key |
|
| 9 |
editor.name.2 = Polytomous Key Graph Editor |
|
| 10 |
editor.name.3 = Polytomous Key List Editor |
|
| 11 |
editor.name.4 = Cdm Authority Editor |
|
| 12 |
editor.name.5 = Derivative View |
|
| 13 |
view.name = Factual Data |
|
| 14 |
view.name.0 = Uses |
|
| 15 |
view.name.1 = Media |
|
| 16 |
view.name.2 = Concept Relations |
|
| 17 |
view.name.3 = Concept Graph |
|
| 18 |
category.name = Taxonomic Editor |
|
| 19 |
command.label = Reference |
|
| 20 |
command.label.0 = Name |
|
| 21 |
command.label.1 = Team |
|
| 22 |
command.label.2 = Person |
|
| 23 |
command.label.3 = Specimen |
|
| 24 |
command.label.4 = Factual Data |
|
| 25 |
command.label.5 = Media |
|
| 26 |
command.label.6 = Concept |
|
| 27 |
command.label.7 = Concept Graph |
|
| 28 |
command.label.8 = Open Parent |
|
| 29 |
menu.label = New |
|
| 30 |
command.label.9 = Heterotypic Synonym |
|
| 31 |
command.label.10 = Homotypic Synonym |
|
| 32 |
command.label.11 = Synonym In Homotypical Group |
|
| 33 |
menu.label.0 = Change To |
|
| 34 |
command.label.12 = Accepted Taxon |
|
| 35 |
command.label.13 = Synonym |
|
| 36 |
command.label.14 = Misapplication |
|
| 37 |
command.label.15 = Delete |
|
| 38 |
command.label.16 = Delete All Empty Names |
|
| 39 |
command.label.17 = Swap Synonym With Accepted |
|
| 40 |
command.label.18 = Show Details |
|
| 41 |
command.label.19 = Save |
|
| 42 |
command.label.20 = New Node |
|
| 43 |
command.label.21 = Delete |
|
| 44 |
command.label.22 = Apply Layout |
|
| 45 |
command.label.23 = New Key Number |
|
| 46 |
command.label.24 = New Alternative |
|
| 47 |
command.label.25 = Refresh Nodes |
|
| 48 |
command.label.26 = Delete |
|
| 49 |
command.label.27 = New Factual Data |
|
| 50 |
menu.label.1 = New |
|
| 51 |
command.label.28 = Move Description to Taxon |
|
| 52 |
command.label.29 = Move Elements to Taxon |
|
| 53 |
command.label.30 = Delete |
|
| 54 |
command.label.31 = Save |
|
| 55 |
menu.label.2 = New Derivative |
|
| 56 |
command.label.32 = New Use |
|
| 57 |
command.label.33 = New Use Summary |
|
| 58 |
command.label.34 = New Use Record |
|
| 59 |
command.label.35 = Delete |
|
| 60 |
command.label.36 = Save |
|
| 61 |
command.label.37 = New Image Gallery |
|
| 62 |
command.label.38 = New Image |
|
| 63 |
command.label.39 = Move Image Up In List |
|
| 64 |
command.label.40 = Move Image Down In List |
|
| 65 |
command.label.41 = Delete |
|
| 66 |
command.label.42 = Save |
|
| 67 |
menu.label.3 = New |
|
| 68 |
command.label.43 = Open Related Concept |
|
| 69 |
command.label.44 = Delete |
|
| 70 |
command.label.45 = Edit Authorities |
|
| 71 |
extension.name = Name Commands |
|
| 72 |
category.name.0 = -- Name Editor |
|
| 73 |
command.name = Open Parent |
|
| 74 |
command.name.0 = Create Homotypic Synonym |
|
| 75 |
command.name.1 = Create Heterotypic Synonym |
|
| 76 |
command.name.2 = Create Synonym In Homotypical Group |
|
| 77 |
command.name.3 = Change To Synonym |
|
| 78 |
command.name.4 = Change To Accepted Taxon |
|
| 79 |
command.name.5 = Change To Misapplication |
|
| 80 |
command.name.6 = Swap Synonym With Accepted |
|
| 81 |
|
|
| 82 |
command.name.7 = Set Basionym / Original Combination |
|
| 83 |
command.name.8 = Remove Basionym / Original Combination |
|
| 84 |
command.name.9 = Delete All Empty Names |
|
| 85 |
category.name.1 = -- Factual |
|
| 86 |
command.name.10 = Create Description Element |
|
| 87 |
command.name.11 = New Description |
|
| 88 |
command.name.12 = Move Description Elements to Taxon |
|
| 89 |
command.name.13 = Move Description to Taxon |
|
| 90 |
category.name.2 = -- New Uses |
|
| 91 |
command.name.14 = New Use |
|
| 92 |
command.name.15 = New Use Summary |
|
| 93 |
command.name.16 = New Use Record |
|
| 94 |
category.name.3 = -- Media |
|
| 95 |
command.name.19 = Move Image Down In List |
|
| 96 |
command.name.20 = New Image Gallery |
|
| 97 |
command.name.21 = New Image |
|
| 98 |
command.name.22 = Move Image Up In List |
|
| 99 |
category.name.4 = -- New Entity |
|
| 100 |
command.name.23 = New Reference |
|
| 101 |
command.name.24 = New Name |
|
| 102 |
command.name.25 = New Team |
|
| 103 |
command.name.26 = New Person |
|
| 104 |
command.name.27 = New Specimen |
|
| 105 |
category.name.5 = -- Polytomous Keys |
|
| 106 |
command.name.28 = New Child Node |
|
| 107 |
command.name.29 = New Sibling Node |
|
| 108 |
command.name.30 = Refresh Node Numbering |
|
| 109 |
command.name.31 = Apply Layout |
|
| 110 |
category.name.6 = -- Concept Relations |
|
| 111 |
command.name.32 = Create Concept Relation |
|
| 112 |
command.name.33 = Open Related Concept |
|
| 113 |
category.name.7 = -- Group |
|
| 114 |
command.name.34 = Edit CDM Authorities |
|
| 115 |
command.name.35 = Open Derivative View |
|
| 116 |
scheme.description = The default key binding scheme for the Taxonomic Editor |
|
| 117 |
scheme.name = Taxonomic Editor Default Key Bindings |
|
| 118 |
editor.name.6 = Specimen Import Editor |
|
| 119 |
editor.name.7 = Gbif Import Editor |
|
| 120 |
editor.name.8 = Checklist Editor |
|
| 121 |
view.name.4 = Specimen Import |
|
| 122 |
view.name.5 = GBIF Specimen Import |
|
| 123 |
command.label.46 = Name |
|
| 124 |
command.label.47 = Reference |
|
| 125 |
command.label.48 = Datasource |
|
| 126 |
command.label.49 = Misapplication |
|
| 127 |
command.label.50 = Use Existing Image |
|
| 128 |
command.name.36 = Create Misapplication |
|
| 129 |
command.name.37 = Use Existing Image |
|
| 130 |
command.name.38 = Open Checklist Editor |
|
| 131 |
command.name.39 = New Datasource |
|
| 132 |
wizard.name = Specimen Search/Import |
|
| 133 |
wizard.description = Queries data provider for specimens with specified parameters.\nNote: Query results are currently limited to 100. |
|
| 134 |
command.name.40 = Validation |
|
| 135 |
view.name.6 = Validation |
|
| 136 |
marker.field.0 = Object Type |
|
| 137 |
marker.field.1 = Object |
|
| 138 |
marker.field.2 = Attribute |
|
| 139 |
marker.field.3 = Problematic Value |
|
| 140 |
marker.field.4 = Problem description |
|
| 141 |
marker.field.5 = Validator |
|
| 142 |
marker.field.6 = Entity Class |
|
| 143 |
marker.field.7 = Entity Id |
|
| 144 |
extension.name.0 = Validation Error |
|
| 145 |
command.label.51 = Open in Specimen Editor |
|
| 146 |
command.label.52 = Delete |
|
| 147 |
command.label.53 = Create Field Unit |
|
| 148 |
command.label.54 = Delete (with children) |
|
| 149 |
command.tooltip = Show Only Individuals Associations |
|
| 150 |
command.label.55 = Open Associated Specimens |
|
| 151 |
command.name.41 = Show Only Individual Associations |
|
| 152 |
command.name.42 = Open Taxon Editor |
|
| 153 |
command.name.43 = Create Field Unit |
|
| 154 |
command.name.44 = Deep Delete |
|
| 155 |
command.name.46 = Move Synonym (Homotypical Group) to another Accepted Taxon |
|
| 156 |
command.label.56 = Move Synonym (Homotypical Group) to another Accepted Taxon |
|
| 157 |
markerContentGenerator.name = Validation Problems Marker Generator |
|
| 158 |
command.name.45 = Delete |
|
| 159 |
command.name.47 = Delete |
|
| 160 |
commandParameter.name = taxonUUID |
|
| 161 |
Bundle-Name = Editor Bundle |
|
| 162 |
command.name.48 = delete |
|
| 163 |
command.name.49 = delete |
|
| 164 |
command.name.50 = delete |
|
| eu.etaxonomy.taxeditor.molecular/OSGI-INF/l10n/plugin_de.properties | ||
|---|---|---|
| 1 |
# Properties file for taxeditor-editor |
|
| 2 |
Bundle-Vendor.0 = EDIT |
|
| 3 |
Bundle-Name.0 = EDIT Taxonomischer Editor - Editor Bundle |
|
| 4 |
command.name.17 = Setze Basionym |
|
| 5 |
command.name.18 = Entferne Basionym |
|
| 6 |
editor.name = Multipage Taxon Editor |
|
| 7 |
editor.name.0 = Editor Taxonname |
|
| 8 |
editor.name.1 = Bestimmungsschl\u00fcssel |
|
| 9 |
editor.name.2 = Polytomer Bestimmungsschl\u00fcssel Graph Editor |
|
| 10 |
editor.name.3 = Polytomer Bestimmungsschl\u00fcssel List Editor |
|
| 11 |
editor.name.4 = CDM Rechtemanagement |
|
| 12 |
editor.name.5 = Ansicht Derivate |
|
| 13 |
view.name = Faktendaten |
|
| 14 |
view.name.0 = Nutzung |
|
| 15 |
view.name.1 = Medien |
|
| 16 |
view.name.2 = Konzeptrelationen |
|
| 17 |
view.name.3 = Konzeptgraph |
|
| 18 |
category.name = Taxonomischer Editor |
|
| 19 |
command.label = Referenz |
|
| 20 |
command.label.0 = Name |
|
| 21 |
command.label.1 = Team |
|
| 22 |
command.label.2 = Person |
|
| 23 |
command.label.3 = Beleg |
|
| 24 |
command.label.4 = Faktendaten |
|
| 25 |
command.label.5 = Medien |
|
| 26 |
command.label.6 = Konzeptrelationen |
|
| 27 |
command.label.7 = Konzeptgraph |
|
| 28 |
command.label.8 = \u00d6ffne Parent |
|
| 29 |
menu.label = Neue |
|
| 30 |
command.label.9 = Heterotypisches Synonym |
|
| 31 |
command.label.10 = Homotypisches Synonym |
|
| 32 |
command.label.11 = Synonym in Homotypischer Gruppe |
|
| 33 |
menu.label.0 = \u00c4ndere zu |
|
| 34 |
command.label.12 = Akzeptiertes Taxon |
|
| 35 |
command.label.13 = Synonym |
|
| 36 |
command.label.14 = Misapplication |
|
| 37 |
command.label.15 = L\u00f6schen |
|
| 38 |
command.label.16 = L\u00f6sche alle leeren Namen |
|
| 39 |
command.label.17 = Tausche Synonym mit akzeptiertem Namen |
|
| 40 |
command.label.18 = Zeige Details |
|
| 41 |
command.label.19 = Speichern |
|
| 42 |
command.label.20 = Neue Knoten |
|
| 43 |
command.label.21 = L\u00f6schen |
|
| 44 |
command.label.22 = Wende Layout an |
|
| 45 |
command.label.23 = Neue Bestimmungsschl\u00fcsselnummer |
|
| 46 |
command.label.24 = Neue Alternative |
|
| 47 |
command.label.25 = Erneuere Knoten |
|
| 48 |
command.label.26 = L\u00f6schen |
|
| 49 |
command.label.27 = Neue Faktendaten |
|
| 50 |
menu.label.1 = Neue |
|
| 51 |
command.label.28 = Verschiebe Eigenschaften zu Taxon |
|
| 52 |
command.label.29 = Verschiebe Elemente zu Taxon |
|
| 53 |
command.label.30 = L\u00f6schen |
|
| 54 |
command.label.31 = Speichern |
|
| 55 |
menu.label.2 = Neue Derivate |
|
| 56 |
command.label.32 = Neue Nutzung |
|
| 57 |
command.label.33 = Neue Zusammenfassung |
|
| 58 |
command.label.34 = Neuer Nutzungsdatensatz |
|
| 59 |
command.label.35 = L\u00f6schen |
|
| 60 |
command.label.36 = Speichern |
|
| 61 |
command.label.37 = Neue Bildergalerie |
|
| 62 |
command.label.38 = Neues Bild |
|
| 63 |
command.label.39 = Bild nach oben |
|
| 64 |
command.label.40 = Bild nach unten |
|
| 65 |
command.label.41 = L\u00f6schen |
|
| 66 |
command.label.42 = Speichern |
|
| 67 |
menu.label.3 = Neue |
|
| 68 |
command.label.43 = \u00d6ffne verbundenes Konzept |
|
| 69 |
command.label.44 = L\u00f6schen |
|
| 70 |
command.label.45 = Bearbeite Rechte |
|
| 71 |
extension.name = Namensbefehle |
|
| 72 |
category.name.0 = -- Namenseditor |
|
| 73 |
command.name = \u00d6ffne Elter |
|
| 74 |
command.name.0 = Erstelle homotypisches Synonym |
|
| 75 |
command.name.1 = Erstelle heterotypisches Synonym |
|
| 76 |
command.name.2 = Erstelle Synonym in homotypischer Gruppe |
|
| 77 |
command.name.3 = \u00c4ndere zu Synonym |
|
| 78 |
command.name.4 = \u00c4ndere zu akzeptiertem Taxon |
|
| 79 |
command.name.5 = \u00c4ndere zu Misapplication |
|
| 80 |
command.name.6 = Tausche Synonym mit akzeptiertem Namen |
|
| 81 |
|
|
| 82 |
command.name.7 = Setze Basionym / Originalkombination |
|
| 83 |
command.name.8 = Entferne Basionym / Originalkombination |
|
| 84 |
command.name.9 = L\u00f6sche alle leeren Namen |
|
| 85 |
category.name.1 = -- Fakten |
|
| 86 |
command.name.10 = Erstelle Beschreibungselement |
|
| 87 |
command.name.11 = Neue Beschreibung |
|
| 88 |
command.name.12 = Bewege Beschreibungselement zu Taxon |
|
| 89 |
command.name.13 = Bewege Beschreibung zu Taxon |
|
| 90 |
category.name.2 = -- Neue Nutzung |
|
| 91 |
command.name.14 = Neue Nutzung |
|
| 92 |
command.name.15 = Neue Zusammenfassung |
|
| 93 |
command.name.16 = Neuer Nutzungsdatensatz |
|
| 94 |
category.name.3 = -- Media |
|
| 95 |
command.name.19 = Bewege Bild nach unten |
|
| 96 |
command.name.20 = Neue Bildergalerie |
|
| 97 |
command.name.21 = Neues Bild |
|
| 98 |
command.name.22 = Bewege Bild nach oben |
|
| 99 |
category.name.4 = -- Neue Entit\u00e4t |
|
| 100 |
command.name.23 = Neue Referenz |
|
| 101 |
command.name.24 = Neuer Name |
|
| 102 |
command.name.25 = Neues Team |
|
| 103 |
command.name.26 = Neue Person |
|
| 104 |
command.name.27 = Neuer Beleg |
|
| 105 |
category.name.5 = -- Polytomer Bestimmungsschl\u00fcssel |
|
| 106 |
command.name.28 = Neue Kinderknoten |
|
| 107 |
command.name.29 = Neuer Geschwisterknoten |
|
| 108 |
command.name.30 = Knotennummerierung aktualisieren |
|
| 109 |
command.name.31 = Layout anwenden |
|
| 110 |
category.name.6 = -- Konzeptbeziehungen |
|
| 111 |
command.name.32 = Erstelle Konzeptrelationen |
|
| 112 |
command.name.33 = \u00d6ffne verbundenes Konzept |
|
| 113 |
category.name.7 = -- Gruppe |
|
| 114 |
command.name.34 = Bearbeite CDM Rechte |
|
| 115 |
command.name.35 = \u00d6ffne Derivate Ansicht |
|
| 116 |
scheme.description = Die Standard Tastenkombinationsschema f\u00fcr den Taxonomischen Editor |
|
| 117 |
scheme.name = Taxonomic Editor Standard Tastenkombinationen |
|
| 118 |
editor.name.6 = Specimen Import Editor |
|
| 119 |
editor.name.7 = GBIF Import Editor |
|
| 120 |
editor.name.8 = Checklist Editor |
|
| 121 |
view.name.4 = Specimen Import |
|
| 122 |
view.name.5 = GBIF Specimen Import |
|
| 123 |
command.label.46 = Name |
|
| 124 |
command.label.47 = Referenz |
|
| 125 |
command.label.48 = Datenquelle |
|
| 126 |
command.label.49 = Misapplication |
|
| 127 |
command.label.50 = Benutze vorhandenes Bild |
|
| 128 |
command.name.36 = Erstelle Misapplication |
|
| 129 |
command.name.37 = Benutze vorhandenes Bild |
|
| 130 |
command.name.38 = \u00d6ffne Checklist Editor |
|
| 131 |
command.name.39 = Neue Datenquelle |
|
| 132 |
wizard.name = Specimen Suche/Import |
|
| 133 |
wizard.description = Sendet eine Anfrage mit den eingegebenen Parametern an den Datenprovider.\nHinweis: Die Anzahl der Anfrageergebnisse sind auf 100 begrenzt. |
|
| 134 |
command.name.40 = Validierung |
|
| 135 |
view.name.6 = Validierung |
|
| 136 |
marker.field.0 = Objekttyp |
|
| 137 |
marker.field.1 = Objekt |
|
| 138 |
marker.field.2 = Attribut |
|
| 139 |
marker.field.3 = Problematischer Wert |
|
| 140 |
marker.field.4 = Problembeschreibung |
|
| 141 |
marker.field.5 = Validierer |
|
| 142 |
marker.field.6 = Entit�tsklasse |
|
| 143 |
marker.field.7 = Entit�ts ID |
|
| 144 |
extension.name.0 = Validierungs-Fehler |
|
| 145 |
command.label.51 = \u00d6ffne Specimen-Editor |
|
| 146 |
command.label.52 = L\u00f6schen |
|
| 147 |
command.label.53 = Neue Field Unit |
|
| 148 |
command.label.54 = L\u00f6schen (mit Kindern) |
|
| 149 |
command.tooltip = Nur Individuals Associations anzeigen |
|
| 150 |
command.label.55 = \u00d6ffne zugeh\u00f6rige Specimens |
|
| 151 |
command.name.41 = Nur Individuals Associations anzeigen |
|
| 152 |
command.name.42 = \u00d6ffne Taxon Editor |
|
| 153 |
command.name.43 = Neue Field Unit |
|
| 154 |
command.name.44 = L\u00f6schen (mit Kindern) |
|
| 155 |
command.name.46 = Verschiebe Synonym(Homotypische Gruppe) zu neuem Akzeptierten Taxon |
|
| 156 |
command.label.56 = Verschiebe Synonym(Homotypische Gruppe) zu neuem Akzeptierten Taxon |
|
| eu.etaxonomy.taxeditor.molecular/OSGI-INF/l10n/plugin_en.properties | ||
|---|---|---|
| 1 |
#Properties file for taxeditor-editor |
|
| 2 |
Bundle-Vendor.0 = EDIT |
|
| 3 |
Bundle-Name.0 = EDIT Taxonomic Editor - Editor Bundle |
|
| 4 |
command.name.17 = Set Basionym |
|
| 5 |
command.name.18 = Remove Basionym |
|
| 6 |
editor.name = Multipage Taxon Editor |
|
| 7 |
editor.name.0 = Taxon Name Editor |
|
| 8 |
editor.name.1 = Key |
|
| 9 |
editor.name.2 = Polytomous Key Graph Editor |
|
| 10 |
editor.name.3 = Polytomous Key List Editor |
|
| 11 |
editor.name.4 = Cdm Authority Editor |
|
| 12 |
editor.name.5 = Derivate View |
|
| 13 |
view.name = Factual Data |
|
| 14 |
view.name.0 = Uses |
|
| 15 |
view.name.1 = Media |
|
| 16 |
view.name.2 = Concept Relations |
|
| 17 |
view.name.3 = Concept Graph |
|
| 18 |
category.name = Taxonomic Editor |
|
| 19 |
command.label = Reference |
|
| 20 |
command.label.0 = Name |
|
| 21 |
command.label.1 = Team |
|
| 22 |
command.label.2 = Person |
|
| 23 |
command.label.3 = Specimen |
|
| 24 |
command.label.4 = Factual Data |
|
| 25 |
command.label.5 = Media |
|
| 26 |
command.label.6 = Concept |
|
| 27 |
command.label.7 = Concept Graph |
|
| 28 |
command.label.8 = Open Parent |
|
| 29 |
menu.label = New |
|
| 30 |
command.label.9 = Heterotypic Synonym |
|
| 31 |
command.label.10 = Homotypic Synonym |
|
| 32 |
command.label.11 = Synonym In Homotypical Group |
|
| 33 |
menu.label.0 = Change To |
|
| 34 |
command.label.12 = Accepted Taxon |
|
| 35 |
command.label.13 = Synonym |
|
| 36 |
command.label.14 = Misapplication |
|
| 37 |
command.label.15 = Delete |
|
| 38 |
command.label.16 = Delete All Empty Names |
|
| 39 |
command.label.17 = Swap Synonym With Accepted |
|
| 40 |
command.label.18 = Show Details |
|
| 41 |
command.label.19 = Save |
|
| 42 |
command.label.20 = New Node |
|
| 43 |
command.label.21 = Delete |
|
| 44 |
command.label.22 = Apply Layout |
|
| 45 |
command.label.23 = New Key Number |
|
| 46 |
command.label.24 = New Alternative |
|
| 47 |
command.label.25 = Refresh Nodes |
|
| 48 |
command.label.26 = Delete |
|
| 49 |
command.label.27 = New Factual Data |
|
| 50 |
menu.label.1 = New |
|
| 51 |
command.label.28 = Move Description to Taxon |
|
| 52 |
command.label.29 = Move Elements to Taxon |
|
| 53 |
command.label.30 = Delete |
|
| 54 |
command.label.31 = Save |
|
| 55 |
menu.label.2 = New Derivate |
|
| 56 |
command.label.32 = New Use |
|
| 57 |
command.label.33 = New Use Summary |
|
| 58 |
command.label.34 = New Use Record |
|
| 59 |
command.label.35 = Delete |
|
| 60 |
command.label.36 = Save |
|
| 61 |
command.label.37 = New Image Gallery |
|
| 62 |
command.label.38 = New Image |
|
| 63 |
command.label.39 = Move Image Up In List |
|
| 64 |
command.label.40 = Move Image Down In List |
|
| 65 |
command.label.41 = Delete |
|
| 66 |
command.label.42 = Save |
|
| 67 |
menu.label.3 = New |
|
| 68 |
command.label.43 = Open Related Concept |
|
| 69 |
command.label.44 = Delete |
|
| 70 |
command.label.45 = Edit Authorities |
|
| 71 |
extension.name = Name Commands |
|
| 72 |
category.name.0 = -- Name Editor |
|
| 73 |
command.name = Open Parent |
|
| 74 |
command.name.0 = Create Homotypic Synonym |
|
| 75 |
command.name.1 = Create Heterotypic Synonym |
|
| 76 |
command.name.2 = Create Synonym In Homotypical Group |
|
| 77 |
command.name.3 = Change To Synonym |
|
| 78 |
command.name.4 = Change To Accepted Taxon |
|
| 79 |
command.name.5 = Change To Misapplication |
|
| 80 |
command.name.6 = Swap Synonym With Accepted |
|
| 81 |
command.name.7 = Set Basionym / Original Combination |
|
| 82 |
command.name.8 = Remove Basionym / Original Combination |
|
| 83 |
command.name.9 = Delete All Empty Names |
|
| 84 |
category.name.1 = -- Factual |
|
| 85 |
command.name.10 = Create Description Element |
|
| 86 |
command.name.11 = New Description |
|
| 87 |
command.name.12 = Move Description Elements to Taxon |
|
| 88 |
command.name.13 = Move Description to Taxon |
|
| 89 |
category.name.2 = -- New Uses |
|
| 90 |
command.name.14 = New Use |
|
| 91 |
command.name.15 = New Use Summary |
|
| 92 |
command.name.16 = New Use Record |
|
| 93 |
category.name.3 = -- Media |
|
| 94 |
command.name.19 = Move Image Down In List |
|
| 95 |
command.name.20 = New Image Gallery |
|
| 96 |
command.name.21 = New Image |
|
| 97 |
command.name.22 = Move Image Up In List |
|
| 98 |
category.name.4 = -- New Entity |
|
| 99 |
command.name.23 = New Reference |
|
| 100 |
command.name.24 = New Name |
|
| 101 |
command.name.25 = New Team |
|
| 102 |
command.name.26 = New Person |
|
| 103 |
command.name.27 = New Specimen |
|
| 104 |
category.name.5 = -- Polytomous Keys |
|
| 105 |
command.name.28 = New Child Node |
|
| 106 |
command.name.29 = New Sibling Node |
|
| 107 |
command.name.30 = Refresh Node Numbering |
|
| 108 |
command.name.31 = Apply Layout |
|
| 109 |
category.name.6 = -- Concept Relations |
|
| 110 |
command.name.32 = Create Concept Relation |
|
| 111 |
command.name.33 = Open Related Concept |
|
| 112 |
category.name.7 = -- Group |
|
| 113 |
command.name.34 = Edit CDM Authorities |
|
| 114 |
command.name.35 = Open Derivate View |
|
| 115 |
scheme.description = The default key binding scheme for the Taxonomic Editor |
|
| 116 |
scheme.name = Taxonomic Editor Default Key Bindingseditor.name.6 = Specimen Import Editor |
|
| 117 |
editor.name.7 = Gbif Import Editor |
|
| 118 |
editor.name.8 = Checklist Editor |
|
| 119 |
view.name.4 = Specimen Import |
|
| 120 |
view.name.5 = GBIF Specimen Import |
|
| 121 |
command.label.46 = Name |
|
| 122 |
command.label.47 = Reference |
|
| 123 |
command.label.48 = Datasource |
|
| 124 |
command.label.49 = Misapplication |
|
| 125 |
command.label.50 = Use Existing Image |
|
| 126 |
command.name.36 = Create Misapplication |
|
| 127 |
command.name.37 = Use Existing Image |
|
| 128 |
command.name.38 = Open Checklist Editor |
|
| 129 |
command.name.39 = New Datasource |
|
| 130 |
wizard.name = Specimen Search/Import |
|
| 131 |
wizard.description = Queries data provider for specimens with specified parameters.\nNote: Query results are currently limited to 100. |
|
| 132 |
command.name.40 = Validation |
|
| 133 |
view.name.6 = Validation |
|
| 134 |
marker.field.0 = Object Type |
|
| 135 |
marker.field.1 = Object |
|
| 136 |
marker.field.2 = Attribute |
|
| 137 |
marker.field.3 = Problematic Value |
|
| 138 |
marker.field.4 = Problem description |
|
| 139 |
marker.field.5 = Validator |
|
| 140 |
marker.field.6 = Entity Class |
|
| 141 |
marker.field.7 = Entity Id |
|
| eu.etaxonomy.taxeditor.molecular/build.properties | ||
|---|---|---|
| 1 |
bin.includes = META-INF/,\ |
|
| 2 |
plugin.xml,\ |
|
| 3 |
icons/,\ |
|
| 4 |
OSGI-INF/ |
|
| eu.etaxonomy.taxeditor.molecular/plugin.xml | ||
|---|---|---|
| 1 |
<?xml version="1.0" encoding="UTF-8"?> |
|
| 2 |
<?eclipse version="3.4"?> |
|
| 3 |
<plugin> |
|
| 4 |
<extension |
|
| 5 |
point="org.eclipse.ui.editors"> |
|
| 6 |
<editor |
|
| 7 |
class="eu.etaxonomy.taxeditor.molecular.editor.AlignmentEditor" |
|
| 8 |
default="false" |
|
| 9 |
id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor" |
|
| 10 |
name="Alignment Editor"> |
|
| 11 |
</editor> |
|
| 12 |
</extension> |
|
| 13 |
<extension |
|
| 14 |
point="org.eclipse.ui.views"> |
|
| 15 |
<view |
|
| 16 |
allowMultiple="true" |
|
| 17 |
class="eu.etaxonomy.taxeditor.molecular.editor.PherogramViewPart" |
|
| 18 |
id="eu.etaxonomy.taxeditor.molecular.PherogramView" |
|
| 19 |
name="PherogramView" |
|
| 20 |
restorable="true"> |
|
| 21 |
</view> |
|
| 22 |
</extension> |
|
| 23 |
<extension |
|
| 24 |
point="org.eclipse.ui.commands"> |
|
| 25 |
<command |
|
| 26 |
defaultHandler="eu.etaxonomy.taxeditor.molecular.handler.EditSequenceHandler" |
|
| 27 |
id="eu.etaxonomy.taxeditor.molecular.editSequence" |
|
| 28 |
name="Edit Sequence"> |
|
| 29 |
</command> |
|
| 30 |
<command |
|
| 31 |
defaultHandler="eu.etaxonomy.taxeditor.molecular.handler.ShowPherogramHandler" |
|
| 32 |
id="eu.etaxonomy.taxeditor.molecular.showPherogram" |
|
| 33 |
name="Show Pherogram"> |
|
| 34 |
</command> |
|
| 35 |
<command |
|
| 36 |
id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.cutPherogramLeft" |
|
| 37 |
name="Cut pherogram left"> |
|
| 38 |
</command> |
|
| 39 |
<command |
|
| 40 |
id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.cutPherogramRight" |
|
| 41 |
name="Cut pherogram right"> |
|
| 42 |
</command> |
|
| 43 |
<command |
|
| 44 |
id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.reverseComplementRows" |
|
| 45 |
name="Reverse complement selected rows"> |
|
| 46 |
</command> |
|
| 47 |
<command |
|
| 48 |
id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.createConsensus" |
|
| 49 |
name="(Re)create consensus sequence"> |
|
| 50 |
</command> |
|
| 51 |
<command |
|
| 52 |
id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.updateConsensus" |
|
| 53 |
name="Update consensus sequence"> |
|
| 54 |
</command> |
|
| 55 |
<command |
|
| 56 |
id="eu.etaxonomy.taxeditor.molecular.pherogramComponent.toggleShowProbabilities" |
|
| 57 |
name="Toggle show probability values"> |
|
| 58 |
</command> |
|
| 59 |
<command |
|
| 60 |
id="eu.etaxonomy.taxeditor.molecular.pherogramComponent.toggleShowBaseCallLines" |
|
| 61 |
name="Toggle show base call lines"> |
|
| 62 |
</command> |
|
| 63 |
<command |
|
| 64 |
id="eu.etaxonomy.taxeditor.molecular.pherogramComponent.changeQualityOutput" |
|
| 65 |
name="Change quality output"> |
|
| 66 |
</command> |
|
| 67 |
<command |
|
| 68 |
id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.loadPherogram" |
|
| 69 |
name="Load Pherogram"> |
|
| 70 |
</command> |
|
| 71 |
<command |
|
| 72 |
id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.toggleInsertOverwrite" |
|
| 73 |
name="Toggle insert/overwrite"> |
|
| 74 |
</command> |
|
| 75 |
<command |
|
| 76 |
id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.toggleLeftRightInsertion" |
|
| 77 |
name="Toggle left/right insertion in base call sequence"> |
|
| 78 |
</command> |
|
| 79 |
</extension> |
|
| 80 |
<extension |
|
| 81 |
point="org.eclipse.ui.menus"> |
|
| 82 |
<menuContribution |
|
| 83 |
locationURI="toolbar:org.eclipse.ui.main.toolbar?after=eu.etaxonomy.taxeditor.navigation.search.toolbar"> |
|
| 84 |
<toolbar |
|
| 85 |
id="eu.etaxonomy.taxeditor.molecular.alignmentToolbar"> |
|
| 86 |
<command |
|
| 87 |
commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.toggleInsertOverwrite" |
|
| 88 |
label="Toggle insert/overwrite" |
|
| 89 |
style="push"> |
|
| 90 |
<visibleWhen |
|
| 91 |
checkEnabled="true"> |
|
| 92 |
<with |
|
| 93 |
variable="activePartId"> |
|
| 94 |
<equals |
|
| 95 |
value="eu.etaxonomy.taxeditor.molecular.AlignmentEditor"> |
|
| 96 |
</equals> |
|
| 97 |
</with> |
|
| 98 |
</visibleWhen> |
|
| 99 |
</command> |
|
| 100 |
<command |
|
| 101 |
commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.toggleLeftRightInsertion" |
|
| 102 |
icon="icons/pherogram-insert-left-16x16.png" |
|
| 103 |
style="push"> |
|
| 104 |
<visibleWhen |
|
| 105 |
checkEnabled="true"> |
|
| 106 |
<with |
|
| 107 |
variable="activePartId"> |
|
| 108 |
<equals |
|
| 109 |
value="eu.etaxonomy.taxeditor.molecular.AlignmentEditor"> |
|
| 110 |
</equals> |
|
| 111 |
</with> |
|
| 112 |
</visibleWhen> |
|
| 113 |
</command> |
|
| 114 |
</toolbar> |
|
| 115 |
</menuContribution> |
|
| 116 |
<menuContribution |
|
| 117 |
allPopups="false" |
|
| 118 |
locationURI="menu:org.eclipse.ui.main.menu"> |
|
| 119 |
<menu |
|
| 120 |
label="Alignment Editor"> |
|
| 121 |
<command |
|
| 122 |
commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.loadPherogram" |
|
| 123 |
style="push"> |
|
| 124 |
</command> |
|
| 125 |
<command |
|
| 126 |
commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.cutPherogramLeft" |
|
| 127 |
id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.cutPherogramLeft" |
|
| 128 |
name="Cut pherogram left"> |
|
| 129 |
</command> |
|
| 130 |
<command |
|
| 131 |
commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.cutPherogramRight" |
|
| 132 |
id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.cutPherogramRight" |
|
| 133 |
style="push"> |
|
| 134 |
</command> |
|
| 135 |
<command |
|
| 136 |
commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.reverseComplementRows" |
|
| 137 |
mnemonic="r" |
|
| 138 |
style="push"> |
|
| 139 |
</command> |
|
| 140 |
<command |
|
| 141 |
commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.createConsensus" |
|
| 142 |
style="push"> |
|
| 143 |
</command> |
|
| 144 |
<command |
|
| 145 |
commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.updateConsensus" |
|
| 146 |
style="push"> |
|
| 147 |
</command> |
|
| 148 |
<visibleWhen |
|
| 149 |
checkEnabled="true"> |
|
| 150 |
<with |
|
| 151 |
variable="activePartId"> |
|
| 152 |
<equals |
|
| 153 |
value="eu.etaxonomy.taxeditor.molecular.AlignmentEditor"> |
|
| 154 |
</equals> |
|
| 155 |
</with> |
|
| 156 |
</visibleWhen> |
|
| 157 |
</menu> |
|
| 158 |
<menu |
|
| 159 |
label="Pherogram View"> |
|
| 160 |
<command |
|
| 161 |
commandId="eu.etaxonomy.taxeditor.molecular.pherogramComponent.changeQualityOutput" |
|
| 162 |
style="push"> |
|
| 163 |
</command> |
|
| 164 |
<command |
|
| 165 |
commandId="eu.etaxonomy.taxeditor.molecular.pherogramComponent.toggleShowProbabilities" |
|
| 166 |
style="push"> |
|
| 167 |
</command> |
|
| 168 |
<command |
|
| 169 |
commandId="eu.etaxonomy.taxeditor.molecular.pherogramComponent.toggleShowBaseCallLines" |
|
| 170 |
style="push"> |
|
| 171 |
</command> |
|
| 172 |
<visibleWhen |
|
| 173 |
checkEnabled="true"> |
|
| 174 |
<with |
|
| 175 |
variable="activePartId"> |
|
| 176 |
<equals |
|
| 177 |
value="eu.etaxonomy.taxeditor.molecular.PherogramView"> |
|
| 178 |
</equals> |
|
| 179 |
</with> |
|
| 180 |
</visibleWhen> |
|
| 181 |
</menu> |
|
| 182 |
</menuContribution> |
|
| 183 |
<menuContribution |
|
| 184 |
locationURI="popup:eu.etaxonomy.taxeditor.editor.view.derivate.DerivateView?before=eu.etaxonomy.taxeditor.editor.view.derivate.DerivateContextMenu"> |
|
| 185 |
<command |
|
| 186 |
commandId="eu.etaxonomy.taxeditor.molecular.editSequence" |
|
| 187 |
label="Edit Sequence" |
|
| 188 |
style="push"> |
|
| 189 |
<visibleWhen |
|
| 190 |
checkEnabled="true"> |
|
| 191 |
<reference |
|
| 192 |
definitionId="isSequence"> |
|
| 193 |
</reference> |
|
| 194 |
</visibleWhen> |
|
| 195 |
</command> |
|
| 196 |
<command |
|
| 197 |
commandId="eu.etaxonomy.taxeditor.molecular.showPherogram" |
|
| 198 |
label="Show Pherogram" |
|
| 199 |
style="push"> |
|
| 200 |
<visibleWhen |
|
| 201 |
checkEnabled="true"> |
|
| 202 |
<reference |
|
| 203 |
definitionId="isSingleRead"> |
|
| 204 |
</reference> |
|
| 205 |
</visibleWhen> |
|
| 206 |
</command> |
|
| 207 |
</menuContribution> |
|
| 208 |
</extension> |
|
| 209 |
<extension |
|
| 210 |
point="org.eclipse.ui.handlers"> |
|
| 211 |
<handler |
|
| 212 |
class="eu.etaxonomy.taxeditor.molecular.handler.LoadPherogramHandler" |
|
| 213 |
commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.loadPherogram"> |
|
| 214 |
<activeWhen> |
|
| 215 |
<with |
|
| 216 |
variable="activePartId"> |
|
| 217 |
<equals |
|
| 218 |
value="eu.etaxonomy.taxeditor.molecular.AlignmentEditor"> |
|
| 219 |
</equals> |
|
| 220 |
</with> |
|
| 221 |
</activeWhen> |
|
| 222 |
</handler> |
|
| 223 |
<handler |
|
| 224 |
class="eu.etaxonomy.taxeditor.molecular.handler.ToggleInsertOverwriteHandler" |
|
| 225 |
commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.toggleInsertOverwrite"> |
|
| 226 |
</handler> |
|
| 227 |
<handler |
|
| 228 |
class="eu.etaxonomy.taxeditor.molecular.handler.ToggleLeftRightInsertionHandler" |
|
| 229 |
commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.toggleLeftRightInsertion"> |
|
| 230 |
</handler> |
|
| 231 |
<handler |
|
| 232 |
class="eu.etaxonomy.taxeditor.molecular.handler.CutPherogramLeftHandler" |
|
| 233 |
commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.cutPherogramLeft"> |
|
| 234 |
</handler> |
|
| 235 |
<handler |
|
| 236 |
class="eu.etaxonomy.taxeditor.molecular.handler.CutPherogramRightHandler" |
|
| 237 |
commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.cutPherogramRight"> |
|
| 238 |
</handler> |
|
| 239 |
<handler |
|
| 240 |
class="eu.etaxonomy.taxeditor.molecular.handler.ReverseComplementHandler" |
|
| 241 |
commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.reverseComplementRows"> |
|
| 242 |
</handler> |
|
| 243 |
<handler |
|
| 244 |
class="eu.etaxonomy.taxeditor.molecular.handler.CreateConsensusSequenceHandler" |
|
| 245 |
commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.createConsensus"> |
|
| 246 |
</handler> |
|
| 247 |
<handler |
|
| 248 |
class="eu.etaxonomy.taxeditor.molecular.handler.UpdateConsensusSequenceHandler" |
|
| 249 |
commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.updateConsensus"> |
|
| 250 |
</handler> |
|
| 251 |
<handler |
|
| 252 |
class="eu.etaxonomy.taxeditor.molecular.handler.ToggleShowPherogramProbabilitiesHandler" |
|
| 253 |
commandId="eu.etaxonomy.taxeditor.molecular.pherogramComponent.toggleShowProbabilities"> |
|
| 254 |
</handler> |
|
| 255 |
<handler |
|
| 256 |
class="eu.etaxonomy.taxeditor.molecular.handler.ToggleShowPherogramBaseCallLinesHandler" |
|
| 257 |
commandId="eu.etaxonomy.taxeditor.molecular.pherogramComponent.toggleShowBaseCallLines"> |
|
| 258 |
</handler> |
|
| 259 |
<handler |
|
| 260 |
class="eu.etaxonomy.taxeditor.molecular.handler.ChangePherogramQualityOutputType" |
|
| 261 |
commandId="eu.etaxonomy.taxeditor.molecular.pherogramComponent.changeQualityOutput"> |
|
| 262 |
</handler> |
|
| 263 |
</extension> |
|
| 264 |
<extension |
|
| 265 |
point="org.eclipse.core.expressions.definitions"> |
|
| 266 |
<definition |
|
| 267 |
id="isSequence"> |
|
| 268 |
<with |
|
| 269 |
variable="selection"> |
|
| 270 |
<test |
|
| 271 |
property="eu.etaxonomy.taxeditor.molecular.SpecimenPropertyTester.isSequence"> |
|
| 272 |
</test> |
|
| 273 |
</with> |
|
| 274 |
</definition> |
|
| 275 |
<definition |
|
| 276 |
id="isSingleRead"> |
|
| 277 |
<with |
|
| 278 |
variable="selection"> |
|
| 279 |
<test |
|
| 280 |
property="eu.etaxonomy.taxeditor.molecular.SpecimenPropertyTester.isSingleRead"> |
|
| 281 |
</test> |
|
| 282 |
</with> |
|
| 283 |
</definition> |
|
| 284 |
</extension> |
|
| 285 |
<extension |
|
| 286 |
point="org.eclipse.core.expressions.propertyTesters"> |
|
| 287 |
<propertyTester |
|
| 288 |
class="eu.etaxonomy.taxeditor.molecular.handler.SpecimenPropertyTester" |
|
| 289 |
id="eu.etaxonomy.taxeditor.molecular.SpecimenPropertyTester" |
|
| 290 |
namespace="eu.etaxonomy.taxeditor.molecular.SpecimenPropertyTester" |
|
| 291 |
properties="isSequence,isSingleRead" |
|
| 292 |
type="org.eclipse.jface.viewers.IStructuredSelection"> |
|
| 293 |
</propertyTester> |
|
| 294 |
</extension> |
|
| 295 |
<extension |
|
| 296 |
point="org.eclipse.ui.bindings"> |
|
| 297 |
<scheme |
|
| 298 |
description="%scheme.description" |
|
| 299 |
id="eu.etaxonomy.taxeditor.bindings.scheme.default" |
|
| 300 |
name="%scheme.name"> |
|
| 301 |
</scheme> |
|
| 302 |
<key |
|
| 303 |
commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.loadPherogram" |
|
| 304 |
schemeId="eu.etaxonomy.taxeditor.bindings.scheme.default" |
|
| 305 |
sequence="M1+O"> |
|
| 306 |
</key> |
|
| 307 |
</extension> |
|
| 308 |
|
|
| 309 |
</plugin> |
|
| eu.etaxonomy.taxeditor.molecular/pom.xml | ||
|---|---|---|
| 1 |
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" |
|
| 2 |
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd"> |
|
| 3 |
|
|
| 4 |
<parent> |
|
| 5 |
<groupId>eu.etaxonomy</groupId> |
|
| 6 |
<artifactId>taxeditor-parent</artifactId> |
|
| 7 |
<version>3.8.0-SNAPSHOT</version> |
|
| 8 |
</parent> |
|
| 9 |
|
|
| 10 |
<modelVersion>4.0.0</modelVersion> |
|
| 11 |
<artifactId>eu.etaxonomy.taxeditor.molecular</artifactId> |
|
| 12 |
<packaging>eclipse-plugin</packaging> |
|
| 13 |
|
|
| 14 |
<name>Molecular Bundle</name> |
|
| 15 |
<description>Provides editors, views and operations for handling molecular data and alignments</description> |
|
| 16 |
|
|
| 17 |
</project> |
|
| eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/TaxeditorMolecularPlugin.java | ||
|---|---|---|
| 1 |
package eu.etaxonomy.taxeditor.molecular; |
|
| 2 |
|
|
| 3 |
import org.eclipse.ui.plugin.AbstractUIPlugin; |
|
| 4 |
import org.osgi.framework.BundleContext; |
|
| 5 |
|
|
| 6 |
/** |
|
| 7 |
* The activator class controls the plug-in life cycle |
|
| 8 |
*/ |
|
| 9 |
public class TaxeditorMolecularPlugin extends AbstractUIPlugin {
|
|
| 10 |
|
|
| 11 |
// The plug-in ID |
|
| 12 |
public static final String PLUGIN_ID = "eu.etaxonomy.taxeditor.molecular"; //$NON-NLS-1$ |
|
| 13 |
|
|
| 14 |
// The shared instance |
|
| 15 |
private static TaxeditorMolecularPlugin plugin; |
|
| 16 |
|
|
| 17 |
/** |
|
| 18 |
* The constructor |
|
| 19 |
*/ |
|
| 20 |
public TaxeditorMolecularPlugin() {
|
|
| 21 |
} |
|
| 22 |
|
|
| 23 |
@Override |
|
| 24 |
public void start(BundleContext context) throws Exception {
|
|
| 25 |
super.start(context); |
|
| 26 |
plugin = this; |
|
| 27 |
} |
|
| 28 |
|
|
| 29 |
@Override |
|
| 30 |
public void stop(BundleContext context) throws Exception {
|
|
| 31 |
plugin = null; |
|
| 32 |
super.stop(context); |
|
| 33 |
} |
|
| 34 |
|
|
| 35 |
/** |
|
| 36 |
* Returns the shared instance |
|
| 37 |
* |
|
| 38 |
* @return the shared instance |
|
| 39 |
*/ |
|
| 40 |
public static TaxeditorMolecularPlugin getDefault() {
|
|
| 41 |
return plugin; |
|
| 42 |
} |
|
| 43 |
|
|
| 44 |
} |
|
| eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/editor/AlignmentEditor.java | ||
|---|---|---|
| 1 |
// $Id$ |
|
| 2 |
/** |
|
| 3 |
* Copyright (C) 2014 EDIT |
|
| 4 |
* European Distributed Institute of Taxonomy |
|
| 5 |
* http://www.e-taxonomy.eu |
|
| 6 |
* |
|
| 7 |
* The contents of this file are subject to the Mozilla Public License Version 1.1 |
|
| 8 |
* See LICENSE.TXT at the top of this package for the full license terms. |
|
| 9 |
*/ |
|
| 10 |
package eu.etaxonomy.taxeditor.molecular.editor; |
|
| 11 |
|
|
| 12 |
|
|
| 13 |
import info.bioinfweb.libralign.alignmentarea.AlignmentArea; |
|
| 14 |
import info.bioinfweb.libralign.alignmentarea.selection.SelectionModel; |
|
| 15 |
import info.bioinfweb.libralign.alignmentarea.tokenpainter.NucleotideTokenPainter; |
|
| 16 |
import info.bioinfweb.libralign.dataarea.implementations.ConsensusSequenceArea; |
|
| 17 |
import info.bioinfweb.libralign.dataarea.implementations.SequenceIndexArea; |
|
| 18 |
import info.bioinfweb.libralign.dataarea.implementations.pherogram.PherogramArea; |
|
| 19 |
import info.bioinfweb.libralign.editsettings.EditSettingsChangeEvent; |
|
| 20 |
import info.bioinfweb.libralign.editsettings.EditSettingsListener; |
|
| 21 |
import info.bioinfweb.libralign.model.AlignmentModel; |
|
| 22 |
import info.bioinfweb.libralign.model.AlignmentModelChangeListener; |
|
| 23 |
import info.bioinfweb.libralign.model.AlignmentModelUtils; |
|
| 24 |
import info.bioinfweb.libralign.model.adapters.StringAdapter; |
|
| 25 |
import info.bioinfweb.libralign.model.events.SequenceChangeEvent; |
|
| 26 |
import info.bioinfweb.libralign.model.events.SequenceRenamedEvent; |
|
| 27 |
import info.bioinfweb.libralign.model.events.TokenChangeEvent; |
|
| 28 |
import info.bioinfweb.libralign.model.implementations.PackedAlignmentModel; |
|
| 29 |
import info.bioinfweb.libralign.model.tokenset.CharacterTokenSet; |
|
| 30 |
import info.bioinfweb.libralign.model.tokenset.TokenSet; |
|
| 31 |
import info.bioinfweb.libralign.multiplealignments.AlignmentAreaList; |
|
| 32 |
import info.bioinfweb.libralign.multiplealignments.MultipleAlignmentsContainer; |
|
| 33 |
import info.bioinfweb.libralign.pherogram.model.PherogramAreaModel; |
|
| 34 |
import info.bioinfweb.libralign.pherogram.model.ShiftChange; |
|
| 35 |
import info.bioinfweb.libralign.pherogram.provider.BioJavaPherogramProvider; |
|
| 36 |
import info.bioinfweb.libralign.pherogram.provider.PherogramProvider; |
|
| 37 |
import info.bioinfweb.libralign.pherogram.provider.ReverseComplementPherogramProvider; |
|
| 38 |
import info.bioinfweb.tic.SWTComponentFactory; |
|
| 39 |
|
|
| 40 |
import java.io.File; |
|
| 41 |
import java.io.IOException; |
|
| 42 |
import java.io.InputStream; |
|
| 43 |
import java.net.URI; |
|
| 44 |
import java.util.ArrayList; |
|
| 45 |
import java.util.Collection; |
|
| 46 |
import java.util.Collections; |
|
| 47 |
import java.util.Iterator; |
|
| 48 |
import java.util.List; |
|
| 49 |
import java.util.Map; |
|
| 50 |
import java.util.TreeMap; |
|
Also available in: Unified diff
Added missing molecular plugin projects