Revision 5ac8a8c8
Added by Patrick Plitzner over 7 years ago
eu.etaxonomy.taxeditor.molecular/plugin.xml | ||
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class="eu.etaxonomy.taxeditor.molecular.editor.AlignmentEditor" |
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default="false" |
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id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor" |
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name="Alignment Editor">
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|
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name="%editor.ALIGNMENT_EDITOR">
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|
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</editor> |
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</extension> |
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<extension |
... | ... | |
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allowMultiple="true" |
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class="eu.etaxonomy.taxeditor.molecular.editor.PherogramViewPart" |
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id="eu.etaxonomy.taxeditor.molecular.PherogramView" |
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name="PherogramView"
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|
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name="%view.PHEROGRAM_VIEW"
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|
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restorable="true"> |
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</view> |
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</extension> |
... | ... | |
25 | 25 |
<command |
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defaultHandler="eu.etaxonomy.taxeditor.molecular.handler.EditSequenceHandler" |
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id="eu.etaxonomy.taxeditor.molecular.editSequence" |
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name="Edit Sequence">
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|
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name="%command.EDIT_SEQUENCE">
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|
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</command> |
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<command |
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defaultHandler="eu.etaxonomy.taxeditor.molecular.handler.ShowPherogramHandler" |
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id="eu.etaxonomy.taxeditor.molecular.showPherogram" |
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name="Show Pherogram">
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|
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name="%command.name.SHOW_PHEROGRAM">
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</command> |
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<command |
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id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.cutPherogramLeft" |
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name="Cut pherogram left">
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|
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name="%command.name.CUT_PHEROGRAM_LEFT">
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|
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</command> |
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<command |
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id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.cutPherogramRight" |
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name="Cut pherogram right">
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|
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name="%command.name.CUT_PHEROGRAM_RIGHT">
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|
42 | 42 |
</command> |
43 | 43 |
<command |
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id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.reverseComplementRows" |
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name="Reverse complement selected rows">
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|
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name="%command.name.REVERSE_COMPLEMENT_SELECTED_ROWS">
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|
46 | 46 |
</command> |
47 | 47 |
<command |
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id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.createConsensus" |
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name="(Re)create consensus sequence">
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|
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name="%command.name.CREATE_CONSENUS_SEQUENCE">
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|
50 | 50 |
</command> |
51 | 51 |
<command |
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id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.updateConsensus" |
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name="Update consensus sequence">
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|
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name="%command.name.UPDATE_CONSENSUS_SEQUENCE">
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|
54 | 54 |
</command> |
55 | 55 |
<command |
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id="eu.etaxonomy.taxeditor.molecular.pherogramComponent.toggleShowProbabilities" |
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name="Toggle show probability values">
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|
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name="%command.name.TOGGLE_SHOW_PROBABILITY_VALUES">
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|
58 | 58 |
</command> |
59 | 59 |
<command |
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id="eu.etaxonomy.taxeditor.molecular.pherogramComponent.toggleShowBaseCallLines" |
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name="Toggle show base call lines">
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|
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name="%command.name.TOGGLE_SHOW_BASE_CALL_LINES">
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|
62 | 62 |
</command> |
63 | 63 |
<command |
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id="eu.etaxonomy.taxeditor.molecular.pherogramComponent.changeQualityOutput" |
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name="Change quality output">
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|
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name="%command.name.CHANGE_QUALITY_OUTPUT">
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|
66 | 66 |
</command> |
67 | 67 |
<command |
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id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.loadPherogram" |
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name="Load Pherogram">
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|
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name="%command.name.LOAD_PHEROGRAM">
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|
70 | 70 |
</command> |
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<command |
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id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.toggleInsertOverwrite" |
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name="Toggle insert/overwrite">
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|
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name="%command.name.TOGGLE_INSERT_OVERWRITE">
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</command> |
75 | 75 |
<command |
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id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.toggleLeftRightInsertion" |
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name="Toggle left/right insertion in base call sequence">
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|
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name="%command.name.TOGGLE_LEFT_RIGHT_INSERTION">
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|
78 | 78 |
</command> |
79 | 79 |
</extension> |
80 | 80 |
<extension |
... | ... | |
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id="eu.etaxonomy.taxeditor.molecular.alignmentToolbar"> |
86 | 86 |
<command |
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commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.toggleInsertOverwrite" |
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label="Toggle insert/overwrite"
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|
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label="%command.TOGGLE_INSERT_OVERWRITE"
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|
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style="push"> |
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<visibleWhen |
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checkEnabled="true"> |
... | ... | |
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allPopups="false" |
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locationURI="menu:org.eclipse.ui.main.menu"> |
119 | 119 |
<menu |
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label="Alignment Editor">
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|
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label="%menu.ALIGNMENT_EDITOR">
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|
121 | 121 |
<command |
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commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.loadPherogram" |
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style="push"> |
... | ... | |
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</visibleWhen> |
157 | 157 |
</menu> |
158 | 158 |
<menu |
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label="Pherogram View">
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|
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label="%menu.label.PHEROGRAM_VIEW">
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|
160 | 160 |
<command |
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commandId="eu.etaxonomy.taxeditor.molecular.pherogramComponent.changeQualityOutput" |
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style="push"> |
... | ... | |
188 | 188 |
</separator> |
189 | 189 |
<command |
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commandId="eu.etaxonomy.taxeditor.molecular.editSequence" |
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label="Edit Sequence"
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|
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label="%command.label.EDIT_SEQUENCE"
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|
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style="push"> |
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<visibleWhen |
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checkEnabled="true"> |
... | ... | |
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</command> |
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<command |
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commandId="eu.etaxonomy.taxeditor.molecular.showPherogram" |
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label="Show Pherogram"
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|
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label="%command.label.SHOW_PHEROGRAM"
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|
203 | 203 |
style="push"> |
204 | 204 |
<visibleWhen |
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checkEnabled="true"> |
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