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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.taxeditor.io.wizard;
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import java.net.URI;
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import java.util.ArrayList;
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import java.util.List;
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import org.apache.commons.lang.StringUtils;
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import org.eclipse.jface.layout.GridDataFactory;
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import org.eclipse.swt.SWT;
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import org.eclipse.swt.events.SelectionAdapter;
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import org.eclipse.swt.events.SelectionEvent;
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import org.eclipse.swt.events.SelectionListener;
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import org.eclipse.swt.layout.GridData;
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import org.eclipse.swt.layout.GridLayout;
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import org.eclipse.swt.widgets.Button;
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import org.eclipse.swt.widgets.Combo;
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import org.eclipse.swt.widgets.Composite;
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import org.eclipse.swt.widgets.Label;
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import eu.etaxonomy.cdm.io.specimen.abcd206.in.Abcd206ImportConfigurator;
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import eu.etaxonomy.cdm.model.metadata.PreferencePredicate;
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import eu.etaxonomy.cdm.model.name.NomenclaturalCode;
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import eu.etaxonomy.taxeditor.databaseAdmin.wizard.AbstractPreferenceWizard;
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import eu.etaxonomy.taxeditor.l10n.Messages;
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import eu.etaxonomy.taxeditor.preference.IPreferenceKeys;
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import eu.etaxonomy.taxeditor.preference.PreferencesUtil;
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/**
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*
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* @author pplitzner
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*
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*/
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public class AbcdImportConfiguratorWizardPage extends AbstractPreferenceWizard implements SelectionListener {
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public static final String PAGE_NAME = "AbcdImportConfiguratorWizardPage";
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private static final String ACCESSION_NUMBER = "Accession number";
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private static final String BARCODE = "Barcode";
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private static final String CATALOGUE_NUMBER = "Catalogue number";
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private Abcd206ImportConfigurator abcdImportConfigurator;
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private List<URI> biocaseProvider = new ArrayList<>();
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private boolean isFileImport = false;
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private boolean isPreferencePage = false;
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private Combo nomenclaturalCodeSelectionCombo;
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private Combo checkBoxMapUnitId;
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private Combo textDNAProviderString;
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protected AbcdImportConfiguratorWizardPage(String title, String description, Abcd206ImportConfigurator configurator) {
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this(title, description, configurator, false, false);
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}
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protected AbcdImportConfiguratorWizardPage(String title, String description, Abcd206ImportConfigurator configurator, boolean isPreferencePage, boolean isFileImport) {
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super(PAGE_NAME);
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this.abcdImportConfigurator = configurator;
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setTitle(title);
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setDescription(description);
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this.isPreferencePage = isPreferencePage;
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this.isFileImport = isFileImport;
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}
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public static AbcdImportConfiguratorWizardPage createPage(Abcd206ImportConfigurator configurator){
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return new AbcdImportConfiguratorWizardPage("Configure import parameters",
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"Tooltips will explain parameters in more detail", configurator);
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}
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public static AbcdImportConfiguratorWizardPage createFileImportPage(Abcd206ImportConfigurator configurator){
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return new AbcdImportConfiguratorWizardPage("Configure import parameters",
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"Tooltips will explain parameters in more detail", configurator, false, true);
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}
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public static AbcdImportConfiguratorWizardPage createPreferencePage(Abcd206ImportConfigurator configurator){
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return new AbcdImportConfiguratorWizardPage("Configure import parameters",
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"Tooltips will explain parameters in more detail", configurator, true, false);
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}
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/** {@inheritDoc} */
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@Override
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public void createControl(Composite parent) {
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final Composite composite = new Composite(parent, SWT.NULL);
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GridLayout gridLayout = new GridLayout();
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gridLayout.numColumns=2;
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//gridLayout.makeColumnsEqualWidth=true;
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composite.setLayout(gridLayout);
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GridData gridData = new GridData();
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gridData.horizontalAlignment = GridData.FILL;
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gridData.grabExcessHorizontalSpace=true;
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gridData.horizontalSpan = 2;
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Button checkBoxMediaSpecimen = new Button(composite, SWT.CHECK);
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checkBoxMediaSpecimen.setSelection(abcdImportConfigurator.isAddMediaAsMediaSpecimen());
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checkBoxMediaSpecimen.setText("Import media as media specimen");
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checkBoxMediaSpecimen
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.setToolTipText("Any media attached to a ABCD unit will be imported as a sub derivative of the specimen created from this unit");
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checkBoxMediaSpecimen.addSelectionListener(new SelectionAdapter() {
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@Override
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public void widgetSelected(SelectionEvent e) {
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abcdImportConfigurator.setAddMediaAsMediaSpecimen(!abcdImportConfigurator.isAddMediaAsMediaSpecimen());
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}
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});
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checkBoxMediaSpecimen.setLayoutData(gridData);
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GridDataFactory.fillDefaults();
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Button checkBoxIgnoreExisting = new Button(composite, SWT.CHECK);
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gridData = new GridData();
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gridData.horizontalAlignment = GridData.FILL;
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gridData.grabExcessHorizontalSpace=true;
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gridData.horizontalSpan = 2;
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checkBoxIgnoreExisting.setSelection(abcdImportConfigurator.isIgnoreImportOfExistingSpecimen());
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checkBoxIgnoreExisting.setText("Do not import existing specimens");
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checkBoxIgnoreExisting
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.setToolTipText("Specimens that have previously been imported will be ignored in this import");
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checkBoxIgnoreExisting.addSelectionListener(new SelectionAdapter() {
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@Override
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public void widgetSelected(SelectionEvent e) {
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abcdImportConfigurator.setIgnoreImportOfExistingSpecimen(!abcdImportConfigurator.isIgnoreImportOfExistingSpecimen());
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}
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});
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checkBoxIgnoreExisting.setLayoutData(gridData);
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GridDataFactory.fillDefaults();
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Button checkBoxIgnoreAuthorship = new Button(composite, SWT.CHECK);
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gridData = new GridData();
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gridData.horizontalAlignment = GridData.FILL_HORIZONTAL;
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gridData.horizontalSpan = 2;
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checkBoxIgnoreAuthorship.setLayoutData(gridData);
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GridDataFactory.fillDefaults();
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checkBoxIgnoreAuthorship.setSelection(abcdImportConfigurator.isIgnoreAuthorship());
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checkBoxIgnoreAuthorship.setText("Ignore Authorship for name matching");
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checkBoxIgnoreAuthorship
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.setToolTipText("Name matching with existing names will be done without "
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+ "the authorship part of the name");
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checkBoxIgnoreAuthorship.addSelectionListener(new SelectionAdapter() {
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@Override
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public void widgetSelected(SelectionEvent e) {
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abcdImportConfigurator.setIgnoreAuthorship(!abcdImportConfigurator.isIgnoreAuthorship());
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}
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});
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Label unitIdLabel = new Label(composite, SWT.NONE);
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unitIdLabel.setText(Messages.AbcdImportPreference_map_unit_nr_catalog_number);
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GridData gridDataUnitId = new GridData();
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gridDataUnitId.horizontalAlignment=SWT.BEGINNING;
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unitIdLabel.setLayoutData(gridDataUnitId);
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GridDataFactory.fillDefaults();
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checkBoxMapUnitId = new Combo(composite, SWT.BORDER| SWT.READ_ONLY);
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gridDataUnitId = new GridData();
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gridDataUnitId.horizontalAlignment=SWT.BEGINNING;
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checkBoxMapUnitId.setLayoutData(gridDataUnitId);
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GridDataFactory.fillDefaults();
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checkBoxMapUnitId.add(ACCESSION_NUMBER);
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checkBoxMapUnitId.add(BARCODE);
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checkBoxMapUnitId.add(CATALOGUE_NUMBER);
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checkBoxMapUnitId
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.setToolTipText(Messages.AbcdImportPreference_map_unit_number_catalog_number_tooltip);
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checkBoxMapUnitId.addSelectionListener(this);
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if (abcdImportConfigurator.isMapUnitIdToAccessionNumber()){
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checkBoxMapUnitId.select(0);
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}else if (abcdImportConfigurator.isMapUnitIdToBarcode()){
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checkBoxMapUnitId.select(1);
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}else {
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checkBoxMapUnitId.select(2);
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}
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Button checkBoxRemoveCountry = new Button(composite, SWT.CHECK);
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gridData = new GridData();
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gridData.horizontalAlignment = GridData.FILL_HORIZONTAL;
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gridData.horizontalSpan = 2;
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checkBoxRemoveCountry.setLayoutData(gridData);
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GridDataFactory.fillDefaults();
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checkBoxRemoveCountry.setSelection(abcdImportConfigurator.isRemoveCountryFromLocalityText());
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checkBoxRemoveCountry.setText("Remove country from locality text");
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checkBoxRemoveCountry
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.setToolTipText("If the locality text contains information about the "
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+ "country which is additionally stored in other ABCD "
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+ "elements then it is removed from the locality text");
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checkBoxRemoveCountry.addSelectionListener(new SelectionAdapter() {
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@Override
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public void widgetSelected(SelectionEvent e) {
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abcdImportConfigurator.setRemoveCountryFromLocalityText(!abcdImportConfigurator.isRemoveCountryFromLocalityText());
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}
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});
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Button checkBoxMoveToDefaultClassification = new Button(composite, SWT.CHECK);
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gridData = new GridData();
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gridData.horizontalAlignment = GridData.FILL_HORIZONTAL;
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gridData.horizontalSpan = 2;
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checkBoxMoveToDefaultClassification.setLayoutData(gridData);
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GridDataFactory.fillDefaults();
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checkBoxMoveToDefaultClassification.setSelection(abcdImportConfigurator.isMoveNewTaxaToDefaultClassification());
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checkBoxMoveToDefaultClassification.setText("Create new classification for new taxa");
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checkBoxMoveToDefaultClassification
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.setToolTipText("For taxa that do not exist in the data base "
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+ "a new classification will be created");
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checkBoxMoveToDefaultClassification.addSelectionListener(new SelectionAdapter() {
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@Override
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public void widgetSelected(SelectionEvent e) {
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abcdImportConfigurator.setMoveNewTaxaToDefaultClassification(!abcdImportConfigurator.isMoveNewTaxaToDefaultClassification());
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}
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});
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Button checkBoxImportSiblings = new Button(composite, SWT.CHECK);
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gridData = new GridData();
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gridData.horizontalAlignment = GridData.FILL_HORIZONTAL;
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gridData.horizontalSpan = 2;
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checkBoxImportSiblings.setLayoutData(gridData);
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GridDataFactory.fillDefaults();
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checkBoxImportSiblings.setSelection(abcdImportConfigurator.isGetSiblings());
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checkBoxImportSiblings.setText("Import all children of cultures or tissue samples");
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checkBoxImportSiblings
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.setToolTipText("For a tissue sample or culture all children will be searched and imported");
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checkBoxImportSiblings.addSelectionListener(new SelectionAdapter() {
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@Override
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public void widgetSelected(SelectionEvent e) {
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abcdImportConfigurator.setGetSiblings(checkBoxImportSiblings.getSelection());
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}
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});
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Button checkBoxAddIndividualsAssociations = new Button(composite, SWT.CHECK);
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gridData = new GridData();
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gridData.horizontalAlignment = GridData.FILL_HORIZONTAL;
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gridData.horizontalSpan = 2;
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checkBoxAddIndividualsAssociations.setLayoutData(gridData);
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GridDataFactory.fillDefaults();
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checkBoxAddIndividualsAssociations.setSelection(abcdImportConfigurator.isAddIndividualsAssociationsSuchAsSpecimenAndObservations());
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checkBoxAddIndividualsAssociations.setText("Create an Individual Association for each Specimen");
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checkBoxAddIndividualsAssociations
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.setToolTipText("For each specimen associated to a taxon an indiviadual association to this taxon is created");
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checkBoxAddIndividualsAssociations.addSelectionListener(new SelectionAdapter() {
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@Override
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public void widgetSelected(SelectionEvent e) {
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abcdImportConfigurator.setAddIndividualsAssociationsSuchAsSpecimenAndObservations(!abcdImportConfigurator.isAddIndividualsAssociationsSuchAsSpecimenAndObservations());
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}
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});
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Button checkBoxReuseDescriptiveGroups = new Button(composite, SWT.CHECK);
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gridData = new GridData();
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gridData.horizontalAlignment = GridData.FILL_HORIZONTAL;
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gridData.horizontalSpan = 2;
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checkBoxReuseDescriptiveGroups.setLayoutData(gridData);
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GridDataFactory.fillDefaults();
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checkBoxReuseDescriptiveGroups.setSelection(abcdImportConfigurator.isReuseExistingDescriptiveGroups());
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checkBoxReuseDescriptiveGroups.setText("Reuse existing descriptive group");
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checkBoxReuseDescriptiveGroups
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.setToolTipText("Reuse one of the existing descriptive groups or create a new one for every import");
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checkBoxReuseDescriptiveGroups.addSelectionListener(new SelectionAdapter() {
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@Override
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public void widgetSelected(SelectionEvent e) {
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abcdImportConfigurator.setReuseExistingDescriptiveGroups(!abcdImportConfigurator.isReuseExistingDescriptiveGroups());
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}
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});
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Button checkBoxReuseExistingTaxa = new Button(composite, SWT.CHECK);
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gridData = new GridData();
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gridData.horizontalAlignment = GridData.FILL_HORIZONTAL;
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gridData.horizontalSpan = 2;
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checkBoxReuseExistingTaxa.setLayoutData(gridData);
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GridDataFactory.fillDefaults();
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checkBoxReuseExistingTaxa.setSelection(abcdImportConfigurator.isReuseExistingTaxaWhenPossible());
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checkBoxReuseExistingTaxa.setText("Reuse existing taxa when possible");
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checkBoxReuseExistingTaxa
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.setToolTipText("Reuse existing taxa when the name matches the identified name of the specimen");
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checkBoxReuseExistingTaxa.addSelectionListener(new SelectionAdapter() {
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@Override
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public void widgetSelected(SelectionEvent e) {
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abcdImportConfigurator.setReuseExistingDescriptiveGroups(!abcdImportConfigurator.isReuseExistingDescriptiveGroups());
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}
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});
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if (!isFileImport){
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Label labelRef = new Label(composite, SWT.NONE);
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gridDataUnitId = new GridData();
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gridDataUnitId.horizontalAlignment=SWT.BEGINNING;
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labelRef.setLayoutData(gridDataUnitId);
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labelRef.setText("Biocase provider for associated DNA");
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GridDataFactory.fillDefaults();
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textDNAProviderString = new Combo(composite, SWT.BORDER);
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textDNAProviderString.setLayoutData(gridDataUnitId);
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GridDataFactory.fillDefaults();
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String allProviderString = PreferencesUtil.getStringValue(PreferencePredicate.BioCaseProvider.getKey(), false);
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if (StringUtils.isNotBlank(allProviderString)){
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String[] providerArray = allProviderString.split(";"); //$NON-NLS-1$
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for (String providerString : providerArray){
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if (!StringUtils.isBlank(providerString)){
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textDNAProviderString.add(providerString);
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}
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}
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}
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textDNAProviderString.setEnabled(true);
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textDNAProviderString.add("Do not search for DNA");
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textDNAProviderString.setLayoutData(new GridData(SWT.FILL, SWT.TOP, true, true, 1, 1));
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if (abcdImportConfigurator.getDnaSoure() != null){
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textDNAProviderString.select(0);
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}else{
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textDNAProviderString.select(textDNAProviderString.getItemCount());
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}
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textDNAProviderString.addSelectionListener(this);
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}else{
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abcdImportConfigurator.setDnaSoure(null);
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}
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Label labelCode = new Label(composite, SWT.NONE);
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labelCode.setText("Nomenclatural Code");
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gridData = new GridData();
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gridData.horizontalAlignment=SWT.BEGINNING;
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340
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|
|
341
|
labelCode.setLayoutData(gridData);
|
|
342
|
GridDataFactory.fillDefaults();
|
|
343
|
nomenclaturalCodeSelectionCombo = new Combo(composite, SWT.BORDER| SWT.READ_ONLY);
|
|
344
|
gridData = new GridData();
|
|
345
|
gridData.horizontalAlignment=SWT.BEGINNING;
|
|
346
|
nomenclaturalCodeSelectionCombo.setLayoutData(gridData);
|
|
347
|
GridDataFactory.fillDefaults();
|
|
348
|
for(NomenclaturalCode code: NomenclaturalCode.values()){
|
|
349
|
nomenclaturalCodeSelectionCombo.add(code.getKey());
|
|
350
|
}
|
|
351
|
|
|
352
|
nomenclaturalCodeSelectionCombo.addSelectionListener(this);
|
|
353
|
int index = 0;
|
|
354
|
if (abcdImportConfigurator.getNomenclaturalCode() != null){
|
|
355
|
for (String label : nomenclaturalCodeSelectionCombo.getItems()){
|
|
356
|
if (label.equals(abcdImportConfigurator.getNomenclaturalCode().getKey())){
|
|
357
|
nomenclaturalCodeSelectionCombo.select(index);
|
|
358
|
}
|
|
359
|
index++;
|
|
360
|
}
|
|
361
|
}
|
|
362
|
|
|
363
|
setControl(composite);
|
|
364
|
}
|
|
365
|
|
|
366
|
@Override
|
|
367
|
public void widgetSelected(SelectionEvent e) {
|
|
368
|
if (e.getSource().equals(nomenclaturalCodeSelectionCombo)){
|
|
369
|
this.abcdImportConfigurator.setNomenclaturalCode(NomenclaturalCode.getByKey(nomenclaturalCodeSelectionCombo.getText()));
|
|
370
|
}
|
|
371
|
if (e.getSource().equals(checkBoxMapUnitId)){
|
|
372
|
String text = checkBoxMapUnitId.getText();
|
|
373
|
if (text.equals(ACCESSION_NUMBER)){
|
|
374
|
abcdImportConfigurator.setMapUnitIdToAccessionNumber(true);
|
|
375
|
abcdImportConfigurator.setMapUnitIdToBarcode(false);
|
|
376
|
abcdImportConfigurator.setMapUnitIdToCatalogNumber(false);
|
|
377
|
}else if (text.equals(BARCODE)){
|
|
378
|
abcdImportConfigurator.setMapUnitIdToAccessionNumber(false);
|
|
379
|
abcdImportConfigurator.setMapUnitIdToBarcode(true);
|
|
380
|
abcdImportConfigurator.setMapUnitIdToCatalogNumber(false);
|
|
381
|
}else{
|
|
382
|
abcdImportConfigurator.setMapUnitIdToAccessionNumber(false);
|
|
383
|
abcdImportConfigurator.setMapUnitIdToBarcode(false);
|
|
384
|
abcdImportConfigurator.setMapUnitIdToCatalogNumber(true);
|
|
385
|
}
|
|
386
|
}
|
|
387
|
if (e.getSource().equals(textDNAProviderString)){
|
|
388
|
String text = textDNAProviderString.getText();
|
|
389
|
try{
|
|
390
|
abcdImportConfigurator.setDnaSoure(URI.create(text));
|
|
391
|
}catch(IllegalArgumentException illegalArgument){
|
|
392
|
abcdImportConfigurator.setDnaSoure(null);
|
|
393
|
}
|
|
394
|
}
|
|
395
|
|
|
396
|
|
|
397
|
}
|
|
398
|
|
|
399
|
public void saveConfigToPrefernceStore() {
|
|
400
|
try{
|
|
401
|
abcdImportConfigurator.setDnaSoure(URI.create(textDNAProviderString.getText()));
|
|
402
|
}catch(IllegalArgumentException e){
|
|
403
|
//TODO: check prior or message
|
|
404
|
abcdImportConfigurator.setDnaSoure(null);
|
|
405
|
}
|
|
406
|
PreferencesUtil.setStringValue(IPreferenceKeys.LAST_USED_ABCD_CONFIG, abcdImportConfigurator.toString());
|
|
407
|
|
|
408
|
|
|
409
|
}
|
|
410
|
|
|
411
|
public String createConfigString(){
|
|
412
|
return abcdImportConfigurator.toString();
|
|
413
|
|
|
414
|
}
|
|
415
|
|
|
416
|
|
|
417
|
|
|
418
|
/* (non-Javadoc)
|
|
419
|
* @see org.eclipse.swt.events.SelectionListener#widgetDefaultSelected(org.eclipse.swt.events.SelectionEvent)
|
|
420
|
*/
|
|
421
|
@Override
|
|
422
|
public void widgetDefaultSelected(SelectionEvent e) {
|
|
423
|
// TODO Auto-generated method stub
|
|
424
|
|
|
425
|
}
|
|
426
|
|
|
427
|
public void createAbcdImportConfig() {
|
|
428
|
this.abcdImportConfigurator = PreferencesUtil.getLocalAbcdImportConfigurator(false);
|
|
429
|
|
|
430
|
}
|
|
431
|
}
|