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/**
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* Copyright (C) 2018 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.taxeditor.editor.descriptiveDataSet.matrix;
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import java.util.ArrayList;
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import java.util.Collection;
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import java.util.HashMap;
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import java.util.HashSet;
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import java.util.List;
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import java.util.Map;
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import java.util.Set;
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import java.util.UUID;
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import java.util.stream.Collectors;
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import org.eclipse.jface.layout.GridDataFactory;
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import org.eclipse.jface.window.Window;
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import org.eclipse.swt.SWT;
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import org.eclipse.swt.events.SelectionAdapter;
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import org.eclipse.swt.events.SelectionEvent;
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import org.eclipse.swt.layout.RowLayout;
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import org.eclipse.swt.widgets.Button;
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import org.eclipse.swt.widgets.Composite;
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import eu.etaxonomy.cdm.api.service.IDescriptionService;
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import eu.etaxonomy.cdm.api.service.IDescriptiveDataSetService;
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import eu.etaxonomy.cdm.api.service.IOccurrenceService;
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import eu.etaxonomy.cdm.api.service.ITaxonNodeService;
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import eu.etaxonomy.cdm.api.service.UpdateResult;
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import eu.etaxonomy.cdm.api.service.dto.RowWrapperDTO;
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import eu.etaxonomy.cdm.model.description.CategoricalData;
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import eu.etaxonomy.cdm.model.description.DescriptionElementBase;
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import eu.etaxonomy.cdm.model.description.Feature;
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import eu.etaxonomy.cdm.model.description.QuantitativeData;
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import eu.etaxonomy.cdm.model.description.SpecimenDescription;
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import eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase;
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import eu.etaxonomy.cdm.model.taxon.Taxon;
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import eu.etaxonomy.cdm.model.taxon.TaxonNode;
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import eu.etaxonomy.cdm.persistence.dto.SpecimenNodeWrapper;
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import eu.etaxonomy.cdm.persistence.dto.TaxonNodeDto;
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import eu.etaxonomy.taxeditor.editor.l10n.Messages;
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import eu.etaxonomy.taxeditor.model.DescriptionHelper;
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import eu.etaxonomy.taxeditor.model.ImageResources;
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import eu.etaxonomy.taxeditor.model.MessagingUtils;
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import eu.etaxonomy.taxeditor.store.CdmStore;
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import eu.etaxonomy.taxeditor.ui.dialog.selection.TaxonSelectionDialog;
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/**
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* @author pplitzner
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* @since Jul 9, 2018
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*
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*/
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public class CharacterMatrixBottomToolbar extends Composite{
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private CharacterMatrix matrix;
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public CharacterMatrixBottomToolbar(CharacterMatrix matrix, int style) {
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super(matrix, style);
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this.matrix = matrix;
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init();
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}
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private void init() {
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setLayout(new RowLayout());
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GridDataFactory.fillDefaults().grab(true, false).applyTo(this);
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/**
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* Add description button
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*/
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Button btnAddDescription = new Button(this, SWT.PUSH);
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btnAddDescription.setImage(ImageResources.getImage(ImageResources.ADD_ICON_GREEN));
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btnAddDescription.addSelectionListener(new SelectionAdapter() {
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@Override
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public void widgetSelected(SelectionEvent e) {
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SpecimenSelectionDialog dialog = new SpecimenSelectionDialog(matrix.getShell(), matrix);
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if(dialog.open()==Window.OK){
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Collection<SpecimenNodeWrapper> wrappers = dialog.getSpecimen();
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for (SpecimenNodeWrapper wrapper : wrappers) {
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SpecimenOrObservationBase specimen = CdmStore.getService(IOccurrenceService.class).load(wrapper.getUuidAndTitleCache().getUuid());
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SpecimenDescription description = getDescriptionForDescriptiveDataSet(specimen);
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//description elements
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Map<Feature, DescriptionElementBase> featureToElementMap = new HashMap<>();
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Set<DescriptionElementBase> elements = description.getElements();
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for (DescriptionElementBase descriptionElementBase : elements) {
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Feature feature = descriptionElementBase.getFeature();
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featureToElementMap.put(feature, descriptionElementBase);
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}
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RowWrapperDTO rowWrapper = CdmStore.getService(IDescriptiveDataSetService.class).createRowWrapper(description, matrix.getDescriptiveDataSet());
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matrix.getDescriptions().add(rowWrapper);
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matrix.getDescriptiveDataSet().addDescription(description);
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matrix.setDirty();
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matrix.getSpecimenCache().remove(wrapper);
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}
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}
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}
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});
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/**
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* Remove description button
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*/
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Button btnRemoveDescription = new Button(this, SWT.PUSH);
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btnRemoveDescription.setImage(ImageResources.getImage(ImageResources.ACTIVE_DELETE_ICON));
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btnRemoveDescription.addSelectionListener(new SelectionAdapter() {
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@Override
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public void widgetSelected(SelectionEvent e) {
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int[] fullySelectedRowPositions = matrix.getBodyLayer().getSelectionLayer().getFullySelectedRowPositions();
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List<RowWrapperDTO> toRemove = new ArrayList<>();
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for (int i : fullySelectedRowPositions) {
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Object rowObject = matrix.getBodyDataProvider().getRowObject(i);
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if(rowObject instanceof RowWrapperDTO){
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toRemove.add((RowWrapperDTO) rowObject);
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}
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}
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toRemove.forEach(rowToRemove->{
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matrix.getDescriptions().remove(rowToRemove);
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matrix.getDescriptiveDataSet().removeDescription(rowToRemove.getSpecimenDescription());
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matrix.setDirty();
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});
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}
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});
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/**
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* Aggregate button
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*/
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Button btnAggregate = new Button(this, SWT.PUSH);
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btnAggregate.setText("Aggregate");
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btnAggregate.addSelectionListener(new SelectionAdapter() {
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@SuppressWarnings("unchecked")
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@Override
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public void widgetSelected(SelectionEvent e) {
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Set<TaxonNode> taxonSubtreeFilter = matrix.getDescriptiveDataSet().getTaxonSubtreeFilter();
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List<TaxonNodeDto> nodeDtos = taxonSubtreeFilter.stream()
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.map(node -> new TaxonNodeDto(node)).collect(Collectors.toList());
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TaxonNodeDto parentDto = CdmStore.getService(ITaxonNodeService.class).findCommonParentDto(nodeDtos);
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UUID taxonUuid = parentDto.getTaxonUuid();
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int response = MessagingUtils.confirmDialog(
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"Choose location for the aggregated description",
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String.format("The aggregated description will be stored at "
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+ "the common parent taxon of this data set:\n%s\n\n"
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+ "Do you want to use this taxon?"
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, parentDto.getTaxonTitleCache()), "Yes", "Choose taxon", "Cancel");
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if(response==2){
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return;
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}
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else if(response==1){
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Taxon taxon = TaxonSelectionDialog.selectTaxon(getShell(), null);
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if(taxon==null){
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return;
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}
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taxonUuid = taxon.getUuid();
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}
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UpdateResult result = CdmStore.getService(IDescriptionService.class).aggregateDescription(taxonUuid, null, matrix.getDescriptiveDataSet().getUuid());
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matrix.addUpdateResult(result);
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matrix.setDirty();
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//aggregate histogram for categorical tooltip
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Map<Feature, CategoricalDataHistogram> featureToHistogramMap = matrix.getFeatureToHistogramMap();
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featureToHistogramMap.clear();
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// matrix.getFeatures().forEach(feature->{
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matrix.getDescriptions()
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.forEach(o -> ((RowWrapperDTO) o).getSpecimenDescription().getElements().stream()
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.filter(descriptionElement -> descriptionElement instanceof CategoricalData)
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.forEach(categoricalData -> {
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Feature feature = ((CategoricalData) categoricalData).getFeature();
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CategoricalDataHistogram dataHistogram = featureToHistogramMap.get(feature);
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if(dataHistogram==null){
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dataHistogram = new CategoricalDataHistogram(feature);
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}
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featureToHistogramMap.put(feature, dataHistogram);
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((CategoricalData) categoricalData).getStateData()
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.forEach(stateData -> featureToHistogramMap.get(feature).addState(stateData.getState()));
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}));
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}
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});
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}
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private SpecimenDescription getDescriptionForDescriptiveDataSet(SpecimenOrObservationBase specimen){
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Set<Feature> wsFeatures = matrix.getDescriptiveDataSet().getDescriptiveSystem().getDistinctFeatures();
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List<DescriptionElementBase> matchingDescriptionElements = new ArrayList<>();
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for (SpecimenDescription specimenDescription : (Set<SpecimenDescription>) specimen.getDescriptions()) {
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specimenDescription = (SpecimenDescription) CdmStore.getService(IDescriptionService.class).load(specimenDescription.getUuid());
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Set<Feature> specimenDescriptionFeatures = new HashSet<>();
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//gather specimen description features and check for match with WS features
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for (DescriptionElementBase specimenDescriptionElement : specimenDescription.getElements()) {
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Feature feature = specimenDescriptionElement.getFeature();
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specimenDescriptionFeatures.add(feature);
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if(wsFeatures.contains(feature)){
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matchingDescriptionElements.add(specimenDescriptionElement);
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}
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}
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//if description with the exact same features is found return the description
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if(specimenDescriptionFeatures.equals(wsFeatures)){
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return specimenDescription;
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}
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}
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//Create new specimen description if no match was found
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matrix.setDirty();
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SpecimenDescription newDesription = SpecimenDescription.NewInstance(specimen);
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newDesription.setTitleCache(Messages.CharacterMatrix_DESCRIPTIVE_DATA_SET+matrix.getDescriptiveDataSet().getLabel()+": "+newDesription.generateTitle(), true); //$NON-NLS-2$
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//check for equals description element (same feature and same values)
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Map<Feature, List<DescriptionElementBase>> featureToElementMap = new HashMap<>();
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for(DescriptionElementBase element:matchingDescriptionElements){
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List<DescriptionElementBase> list = featureToElementMap.get(element.getFeature());
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if(list==null){
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list = new ArrayList<>();
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}
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list.add(element);
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featureToElementMap.put(element.getFeature(), list);
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}
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Set<DescriptionElementBase> descriptionElementsToClone = new HashSet<>();
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for(Feature feature:featureToElementMap.keySet()){
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List<DescriptionElementBase> elements = featureToElementMap.get(feature);
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//no duplicate description elements found for this feature
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if(elements.size()==1){
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descriptionElementsToClone.add(elements.get(0));
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}
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//duplicates found -> check if all are equal
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else{
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DescriptionElementBase match = null;
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for (DescriptionElementBase descriptionElementBase : elements) {
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if(match==null){
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match = descriptionElementBase;
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}
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else if(!new DescriptionElementCompareWrapper(match).equals(new DescriptionElementCompareWrapper(descriptionElementBase))){
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match = null;
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MessagingUtils.informationDialog(Messages.CharacterMatrix_MULTIPLE_DATA,
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String.format(Messages.CharacterMatrix_MULTIPLE_DATA_MESSAGE, feature.getLabel()));
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break;
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}
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}
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if(match!=null){
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descriptionElementsToClone.add(match);
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}
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}
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}
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//clone matching descriptionElements
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for (DescriptionElementBase descriptionElementBase : descriptionElementsToClone) {
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DescriptionElementBase clone;
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try {
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clone = descriptionElementBase.clone(newDesription);
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clone.getSources().forEach(source -> source.setOriginalNameString(DescriptionHelper.getLabel(descriptionElementBase)));
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} catch (CloneNotSupportedException e) {
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MessagingUtils.error(CharacterMatrix.class, e);
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}
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}
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//add all remaining description elements to the new description
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for(Feature wsFeature:wsFeatures){
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boolean featureFound = false;
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for(DescriptionElementBase element:newDesription.getElements()){
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if(element.getFeature().equals(wsFeature)){
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featureFound = true;
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break;
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}
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}
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if(!featureFound){
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if(wsFeature.isSupportsCategoricalData()){
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newDesription.addElement(CategoricalData.NewInstance(wsFeature));
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}
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else if(wsFeature.isSupportsQuantitativeData()){
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newDesription.addElement(QuantitativeData.NewInstance(wsFeature));
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}
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}
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}
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return newDesription;
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}
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}
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