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/**
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* Copyright (C) 2020 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.taxeditor.editor.descriptiveDataSet.matrix.handler;
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import java.util.HashSet;
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import java.util.List;
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import java.util.Set;
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import java.util.UUID;
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import java.util.stream.Collectors;
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import javax.inject.Named;
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import org.eclipse.core.runtime.ICoreRunnable;
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import org.eclipse.core.runtime.SubMonitor;
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import org.eclipse.core.runtime.jobs.Job;
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import org.eclipse.e4.core.di.annotations.CanExecute;
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import org.eclipse.e4.core.di.annotations.Execute;
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import org.eclipse.e4.ui.di.UISynchronize;
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import org.eclipse.e4.ui.model.application.ui.basic.MPart;
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import org.eclipse.e4.ui.model.application.ui.menu.MHandledMenuItem;
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import org.eclipse.e4.ui.services.IServiceConstants;
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import org.eclipse.jface.viewers.IStructuredSelection;
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import org.eclipse.jface.window.Window;
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import org.eclipse.jface.wizard.WizardDialog;
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import org.eclipse.nebula.widgets.nattable.data.IRowDataProvider;
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import org.eclipse.swt.widgets.Display;
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import eu.etaxonomy.cdm.api.application.CdmApplicationState;
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import eu.etaxonomy.cdm.api.service.IDescriptiveDataSetService;
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import eu.etaxonomy.cdm.api.service.UpdateResult;
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import eu.etaxonomy.cdm.api.service.description.AggregationMode;
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import eu.etaxonomy.cdm.api.service.description.StructuredDescriptionAggregationConfiguration;
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import eu.etaxonomy.cdm.api.service.dto.DescriptionBaseDto;
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import eu.etaxonomy.cdm.api.service.dto.TaxonRowWrapperDTO;
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import eu.etaxonomy.cdm.common.monitor.IProgressMonitor;
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import eu.etaxonomy.cdm.common.monitor.IRemotingProgressMonitor;
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import eu.etaxonomy.cdm.filter.TaxonNodeFilter;
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import eu.etaxonomy.cdm.model.common.CdmBase;
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import eu.etaxonomy.cdm.model.description.DescriptionBase;
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import eu.etaxonomy.cdm.model.description.DescriptiveDataSet;
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import eu.etaxonomy.cdm.model.description.TaxonDescription;
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import eu.etaxonomy.cdm.persistence.dto.DescriptiveDataSetBaseDto;
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import eu.etaxonomy.cdm.persistence.dto.TaxonNodeDto;
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import eu.etaxonomy.cdm.persistence.dto.TermDto;
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import eu.etaxonomy.taxeditor.editor.descriptiveDataSet.matrix.CharacterMatrix;
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import eu.etaxonomy.taxeditor.editor.descriptiveDataSet.matrix.CharacterMatrixPart;
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import eu.etaxonomy.taxeditor.editor.internal.TaxeditorEditorPlugin;
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import eu.etaxonomy.taxeditor.event.EventUtility;
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import eu.etaxonomy.taxeditor.event.WorkbenchEventConstants;
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import eu.etaxonomy.taxeditor.model.AbstractUtility;
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import eu.etaxonomy.taxeditor.model.MessagingUtils;
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import eu.etaxonomy.taxeditor.operation.IFeedbackGenerator;
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import eu.etaxonomy.taxeditor.store.CdmStore;
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import eu.etaxonomy.taxeditor.store.StoreUtil;
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import eu.etaxonomy.taxeditor.ui.dialog.configurator.StructuredAggregationConfigurationWizard;
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/**
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* @author k.luther
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* @since Jun 4, 2020
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*/
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public class AggregationHandler {
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UpdateResult result = null;
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@Execute
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public void execute(@Named(IServiceConstants.ACTIVE_PART)MPart activePart, UISynchronize sync) {
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// dependent on the selection the specimens are filtered
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CharacterMatrixPart matrixPart = (CharacterMatrixPart) activePart.getObject();
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CharacterMatrix matrix = matrixPart.getMatrix();
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if(StoreUtil.promptCheckIsDirty(matrixPart)){
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return;
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}
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//ranks
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UUID minRankUuid = matrix.getDescriptiveDataSet().getMinRank() != null? matrix.getDescriptiveDataSet().getMinRank().getUuid(): null;
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UUID maxRankUuid = matrix.getDescriptiveDataSet().getMaxRank() != null? matrix.getDescriptiveDataSet().getMaxRank().getUuid(): null;
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TaxonNodeFilter filter = TaxonNodeFilter.NewRankInstance(minRankUuid, maxRankUuid);
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//geofilter
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if (matrix.getDescriptiveDataSet().getGeoFilter() != null){
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for (TermDto namedArea : matrix.getDescriptiveDataSet().getGeoFilter()) {
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filter = filter.orArea(namedArea.getUuid());
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}
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}
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//taxon nodes
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IStructuredSelection sel = matrix.getSelection();
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@SuppressWarnings("unchecked")
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List<TaxonNodeDto> nodeDtos = (List<TaxonNodeDto>)sel.toList().stream()
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.filter(o->o instanceof TaxonNodeDto)
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.collect(Collectors.toList());
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if (!nodeDtos.isEmpty()){
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for (TaxonNodeDto dto: nodeDtos){
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filter = filter.orSubtree(dto.getUuid());
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}
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}else{
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if (matrix.getDescriptiveDataSet() != null && matrix.getDescriptiveDataSet().getSubTreeFilter() != null){
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for (TaxonNodeDto taxonNode : matrix.getDescriptiveDataSet().getSubTreeFilter()) {
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filter = filter.orSubtree(taxonNode.getUuid());
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}
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}
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}
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filter.setIncludeUnpublished(true);
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StructuredDescriptionAggregationConfiguration config =
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StructuredDescriptionAggregationConfiguration.NewInstance(filter, (IProgressMonitor)null);
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config.setDatasetUuid(matrix.getDescriptiveDataSet().getUuid());
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config.setAggregationMode(AggregationMode.byWithinTaxonAndToParent());
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config.setIncludeLiterature(true);
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config.setIncludeDefault(true);
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config.setAdaptBatchSize(false);
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StructuredAggregationConfigurationWizard aggregationWizard = new StructuredAggregationConfigurationWizard(config, matrix.getDescriptiveDataSet(), nodeDtos);
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WizardDialog dialog = new WizardDialog(AbstractUtility.getShell(),
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aggregationWizard);
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int open = dialog.open();
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if (open != Window.OK){
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return;
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}
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//job
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String jobLabel = "Aggregate Descriptive Dataset";
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UUID monitorUuid = CdmApplicationState.getLongRunningTasksService().invoke(config);
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Job job = Job.create(jobLabel, (ICoreRunnable) monitor -> {
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SubMonitor subMonitor = SubMonitor.convert(monitor);
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subMonitor.beginTask(jobLabel, IProgressMonitor.UNKNOWN);
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IRemotingProgressMonitor remotingMonitor;
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try {
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remotingMonitor = CdmStore.getProgressMonitorClientManager()
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.pollMonitor(jobLabel,
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monitorUuid,
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50,
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null,
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(List<IFeedbackGenerator>)null,
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subMonitor);
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Object resultObject = remotingMonitor.getResult();
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if(resultObject instanceof Exception){
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MessagingUtils.errorDialog("Aggregation failed", this, "Aggregation was not successfull", TaxeditorEditorPlugin.PLUGIN_ID, (Exception)resultObject, true, true);
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}
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else if(resultObject instanceof UpdateResult){
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result = ((UpdateResult) resultObject);
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if (result.isError()){
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Exception e = result.getExceptions().isEmpty()? null : result.getExceptions().iterator().next();
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MessagingUtils.errorDialog("Aggregation failed", this, "Aggregation was not successfull", TaxeditorEditorPlugin.PLUGIN_ID, e, true, true);
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}
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Set<UUID> updatedObjects = result.getInsertedOrUpdatedUuids(TaxonDescription.class);
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Set<TaxonRowWrapperDTO> dtos = new HashSet<>();
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DescriptiveDataSet dataSet = (DescriptiveDataSet) result.getCdmEntity();
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for (UUID updatedObj: updatedObjects){
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TaxonRowWrapperDTO rowWrapper = CdmStore.getService(IDescriptiveDataSetService.class).createTaxonRowWrapper(updatedObj, matrix.getDescriptiveDataSet().getUuid());
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boolean isRemoved = matrixPart.getMatrix().getDescriptions().remove(rowWrapper);
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matrixPart.getMatrix().getDescriptions().add(rowWrapper);
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}
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}
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} catch (InterruptedException e) {
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return;
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}
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monitor.done();
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});
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job.schedule();
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}
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@CanExecute
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public boolean canExecute(@Named(IServiceConstants.ACTIVE_PART)MPart activePart,
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MHandledMenuItem menuItem){
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CharacterMatrixPart matrixPart = (CharacterMatrixPart) activePart.getObject();
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IStructuredSelection selection = matrixPart.getSelection();
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boolean canExecute = (selection.isEmpty() ||
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!(selection.getFirstElement() instanceof TaxonRowWrapperDTO) );
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return canExecute;
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}
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}
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