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// $Id$
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/**
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* Copyright (C) 2014 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.taxeditor.editor.view.dataimport;
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import java.io.IOException;
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import java.io.InputStream;
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import java.net.URI;
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import java.util.ArrayList;
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import java.util.Collection;
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import org.apache.http.client.ClientProtocolException;
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import eu.etaxonomy.cdm.ext.occurrence.bioCase.BioCaseQueryServiceWrapper;
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import eu.etaxonomy.cdm.io.common.CdmDefaultImport;
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import eu.etaxonomy.cdm.io.specimen.abcd206.in.Abcd206ImportConfigurator;
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import eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase;
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import eu.etaxonomy.taxeditor.editor.view.dataimport.transientServices.TransientCdmRepository;
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import eu.etaxonomy.taxeditor.store.CdmStore;
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/**
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* @author pplitzner
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* @date Sep 3, 2014
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*
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*/
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public class SpecimenImportView extends DataImportView<SpecimenOrObservationBase<?>> {
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public static final String ID = "eu.etaxonomy.taxeditor.editor.view.dataimport.SpecimenImportView"; //$NON-NLS-1$
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private URI endPoint;
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public SpecimenImportView() {
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}
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/**
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* @param endPoint
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*/
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public void setEndpoint(URI endPoint) {
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this.endPoint = endPoint;
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}
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/* (non-Javadoc)
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* @see eu.etaxonomy.taxeditor.editor.view.dataimport.DataImportView#getTextForTableItem(java.lang.Object)
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*/
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@Override
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protected String getTextForTableItem(SpecimenOrObservationBase<?> item) {
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return item.getTitleCache();
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}
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/* (non-Javadoc)
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* @see eu.etaxonomy.taxeditor.editor.view.dataimport.DataImportView#query()
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*/
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@Override
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public void query() {
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String errorMessage = "Could not execute query " + query;
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Collection<SpecimenOrObservationBase<?>> results = new ArrayList<SpecimenOrObservationBase<?>>();
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try {
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//FIXME move ABCD import to cdmlib -> this will also get rid of the transient services
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InputStream resultStream;
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resultStream = new BioCaseQueryServiceWrapper().query(query, endPoint);
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Abcd206ImportConfigurator configurator = Abcd206ImportConfigurator.NewInstance(resultStream, null, false);
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TransientCdmRepository repo =
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new TransientCdmRepository(CdmStore.getCurrentApplicationConfiguration());
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configurator.setCdmAppController(repo);
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configurator.setDoAddMediaAsMediaSpecimen(true);
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CdmDefaultImport<Abcd206ImportConfigurator> importer = new CdmDefaultImport<Abcd206ImportConfigurator>();
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importer.invoke(configurator);
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results = repo.getUnits();
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setResults(results);
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} catch (ClientProtocolException e) {
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logger.error(errorMessage, e);
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} catch (IOException e) {
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logger.error(errorMessage, e);
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}
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setResults(results);
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}
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}
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