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// $Id$
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/**
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* Copyright (C) 2013 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.taxeditor.ui.section.occurrence.dna;
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import eu.etaxonomy.cdm.model.common.DefinedTerm;
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import eu.etaxonomy.cdm.model.molecular.Sequence;
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import eu.etaxonomy.cdm.model.molecular.SequenceString;
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import eu.etaxonomy.taxeditor.ui.combo.TermComboElement;
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import eu.etaxonomy.taxeditor.ui.element.CdmFormFactory;
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import eu.etaxonomy.taxeditor.ui.element.ICdmFormElement;
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import eu.etaxonomy.taxeditor.ui.element.NumberWithLabelElement;
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import eu.etaxonomy.taxeditor.ui.element.TextWithLabelElement;
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import eu.etaxonomy.taxeditor.ui.element.UriWithLabelElement;
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import eu.etaxonomy.taxeditor.ui.section.AbstractCdmDetailElement;
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/**
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* @author pplitzner
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* @date 19.12.2013
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*
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*/
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public class SequenceGeneralDetailElement extends AbstractCdmDetailElement<Sequence> {
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private TermComboElement<DefinedTerm> comboMarker;
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private TextWithLabelElement textConsensusSequence;
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private NumberWithLabelElement textConsensusSequenceLength;
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private TextWithLabelElement textBarcodeSequence;
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private TextWithLabelElement textGeneticAccessNo;
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private TextWithLabelElement textBoldProcessID;
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private UriWithLabelElement textBoldUri;
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/**
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* @param formFactory
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* @param formElement
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*/
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public SequenceGeneralDetailElement(CdmFormFactory formFactory, ICdmFormElement formElement) {
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super(formFactory, formElement);
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}
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/*
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* (non-Javadoc)
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*
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* @see
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* eu.etaxonomy.taxeditor.section.AbstractCdmDetailElement#createControls
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* (eu.etaxonomy.taxeditor.forms.ICdmFormElement, java.lang.Object, int)
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*/
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@Override
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protected void createControls(ICdmFormElement formElement, Sequence entity, int style) {
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comboMarker = formFactory.createTermComboElement(DefinedTerm.class, formElement, "DNA Marker",
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entity.getDnaMarker(),
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style);
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textConsensusSequence = formFactory.createTextWithLabelElement(formElement, "Consensus Sequence 5'->3'", entity.getConsensusSequence().getString(), style);
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textConsensusSequenceLength = formFactory.createNumberTextWithLabelElement(formElement, "Consensus Seq. Length", entity.getConsensusSequence().getLength(), style);
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textBarcodeSequence = formFactory.createTextWithLabelElement(formElement, "Barcode Sequence 5'->3'", entity.getBarcodeSequencePart()==null?"":entity.getBarcodeSequencePart().getString(), style);
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textGeneticAccessNo = formFactory.createTextWithLabelElement(formElement, "Genetic Acc. No.", entity.getGeneticAccessionNumber(), style);
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textBoldProcessID = formFactory.createTextWithLabelElement(formElement, "BOLD Process ID", entity.getBoldProcessId(), style);
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textBoldUri = formFactory.createUriWithLabelElement(formElement, "BOLD URI", entity.getBoldUri(), style);
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textBoldUri.setEnabled(false);
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}
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/*
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* (non-Javadoc)
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*
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* @see
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* eu.etaxonomy.taxeditor.section.AbstractCdmDetailElement#handleEvent(java
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* .lang.Object)
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*/
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@Override
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public void handleEvent(Object eventSource) {
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if(eventSource==comboMarker){
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getEntity().setDnaMarker(comboMarker.getSelection());
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}
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else if(eventSource==textConsensusSequence){
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SequenceString consensusSequence = getEntity().getConsensusSequence();
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if(consensusSequence==null){
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consensusSequence = SequenceString.NewInstance();
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}
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consensusSequence.setString(textConsensusSequence.getText());
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getEntity().setConsensusSequence(consensusSequence);
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}
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else if(eventSource==textConsensusSequenceLength){
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SequenceString consensusSequence = getEntity().getConsensusSequence();
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if(consensusSequence==null){
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consensusSequence = SequenceString.NewInstance();
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}
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consensusSequence.setLength(textConsensusSequenceLength.getInteger());
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getEntity().setConsensusSequence(consensusSequence);
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}
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else if(eventSource==textBarcodeSequence){
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SequenceString barcodeSequencePart = getEntity().getBarcodeSequencePart();
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if(barcodeSequencePart==null){
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barcodeSequencePart = SequenceString.NewInstance();
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}
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barcodeSequencePart.setString(textBarcodeSequence.getText());
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getEntity().setBarcodeSequencePart(barcodeSequencePart);
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}
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else if(eventSource==textGeneticAccessNo){
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getEntity().setGeneticAccessionNumber(textGeneticAccessNo.getText());
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}
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else if(eventSource==textBoldProcessID){
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getEntity().setBoldProcessId(textBoldProcessID.getText());
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if(textBoldProcessID.getText()!=null && !textBoldProcessID.getText().isEmpty()){
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textBoldUri.setUri(getEntity().getBoldUri());
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}
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else{
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textBoldUri.setText("");
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}
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}
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else if(eventSource==textBoldUri){
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//cannot be set because it is generated from the genetic access number and a base URI
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}
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}
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}
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