Revision 3374d46f
Added by Katja Luther almost 7 years ago
| eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/view/dataimport/SaveImportedSpecimenAction.java | ||
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package eu.etaxonomy.taxeditor.view.dataimport; |
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import java.io.IOException; |
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import java.net.URI; |
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import java.util.ArrayList; |
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import java.util.Collection; |
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import java.util.List; |
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import java.util.Set; |
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import org.apache.http.client.ClientProtocolException; |
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import org.apache.log4j.Logger; |
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import org.eclipse.core.runtime.jobs.Job; |
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import org.eclipse.jface.action.Action; |
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import eu.etaxonomy.cdm.ext.occurrence.bioCase.BioCaseResponse; |
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import eu.etaxonomy.cdm.ext.occurrence.gbif.DataSetResponse; |
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import eu.etaxonomy.cdm.ext.occurrence.gbif.GbifDataSetProtocol; |
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import eu.etaxonomy.cdm.ext.occurrence.gbif.GbifQueryServiceWrapper; |
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import eu.etaxonomy.cdm.ext.occurrence.gbif.GbifResponse; |
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import eu.etaxonomy.cdm.io.specimen.abcd206.in.Abcd206ImportConfigurator; |
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import eu.etaxonomy.cdm.io.specimen.gbif.in.GbifImportConfigurator; |
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import eu.etaxonomy.cdm.model.common.DefinedTermBase; |
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import eu.etaxonomy.taxeditor.preference.PreferencesUtil; |
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import eu.etaxonomy.taxeditor.store.CdmStore; |
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public class SaveImportedSpecimenAction extends Action {
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URI dataSetUri = null; |
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for (BioCaseResponse response:checkedAbcdResults){
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// if (!response.getDataSetUri().equals(dataSetUri)){
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if (!response.getDataSetUri().equals(dataSetUri)){
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dataSetUri = response.getDataSetUri(); |
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configuratorAbcd = Abcd206ImportConfigurator.NewInstance(dataSetUri, null, false); |
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configuratorAbcd.addMediaAsMediaSpecimen(true); |
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configuratorAbcd.setIgnoreAuthorship(true); |
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configuratorAbcd.setMoveNewTaxaToDefaultClassification(false); |
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configuratorAbcd = PreferencesUtil.getAbcdImportConfigurationPreference(false); |
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configuratorAbcd.setSourceUri(dataSetUri); |
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// configuratorAbcd.addMediaAsMediaSpecimen(true); |
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// configuratorAbcd.setIgnoreAuthorship(true); |
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// configuratorAbcd.setMoveNewTaxaToDefaultClassification(false); |
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unitIdsBioCase = new HashSet<String[]>(); |
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bioCaseOccurrenceQuery = new OccurenceQuery(unitIdsBioCase); |
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configuratorAbcd.setOccurenceQuery(bioCaseOccurrenceQuery); |
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configuratorAbcd.setGetSiblings(true); |
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// configuratorAbcd.setGetSiblings(true);
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if (dataImportView.getClassification() != null){
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configuratorAbcd.setClassificationUuid(dataImportView.getClassification().getUuid()); |
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} |
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if (dataImportView.getReferenceString() != null){
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configuratorAbcd.setSourceReferenceTitle(dataImportView.getReferenceString()); |
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} |
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abcdConfigurators.add(configuratorAbcd); |
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//}
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} |
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tripleId = response.getTripleID(); |
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unitIdsBioCase.add(tripleId); |
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} |
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if (!unitIdsBioCase.isEmpty()){
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configuratorAbcd = Abcd206ImportConfigurator.NewInstance(dataSetUri, null, false); |
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configuratorAbcd.addMediaAsMediaSpecimen(true); |
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configuratorAbcd.setIgnoreAuthorship(true); |
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configuratorAbcd.setMoveNewTaxaToDefaultClassification(false); |
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if (configuratorAbcd != null){
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abcdConfigurators.add(configuratorAbcd); |
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} |
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// unitIdsBioCase = new HashSet<String[]>(); |
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bioCaseOccurrenceQuery = new OccurenceQuery(unitIdsBioCase); |
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configuratorAbcd.setOccurenceQuery(bioCaseOccurrenceQuery); |
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configuratorAbcd.setGetSiblings(true); |
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if (dataImportView.getClassification() != null){
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configuratorAbcd.setClassificationUuid(dataImportView.getClassification().getUuid()); |
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} |
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} |
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for (GbifResponse response: biocaseResponses){
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try {
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dataSetResponse = new GbifQueryServiceWrapper().queryOriginalDataSet(response); |
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dataSetUri = dataSetResponse.getEndpoint(); |
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} catch (ClientProtocolException e) {
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// TODO Auto-generated catch block |
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e.printStackTrace(); |
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} catch (IOException e) {
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// TODO Auto-generated catch block |
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e.printStackTrace(); |
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} |
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if (!response.getDataSetUri().equals(dataSetUri)){
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configuratorAbcd = Abcd206ImportConfigurator.NewInstance(dataSetUri, null, false); |
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configuratorAbcd.addMediaAsMediaSpecimen(true); |
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configuratorAbcd.setIgnoreAuthorship(true); |
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configuratorAbcd.setMoveNewTaxaToDefaultClassification(false); |
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if (configuratorAbcd != null){
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abcdConfigurators.add(configuratorAbcd); |
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} |
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unitIdsBioCase = new HashSet<String[]>(); |
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bioCaseOccurrenceQuery = new OccurenceQuery(unitIdsBioCase); |
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configuratorAbcd.setOccurenceQuery(bioCaseOccurrenceQuery); |
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configuratorAbcd.setGetSiblings(true); |
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if (dataImportView.getClassification() != null){
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configuratorAbcd.setClassificationUuid(dataImportView.getClassification().getUuid()); |
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} |
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} |
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tripleId = response.getTripleID(); |
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unitIdsBioCase.add(tripleId); |
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} |
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// if (!unitIdsBioCase.isEmpty()){
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// configuratorAbcd = Abcd206ImportConfigurator.NewInstance(dataSetUri, null, false); |
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// configuratorAbcd.addMediaAsMediaSpecimen(true); |
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// configuratorAbcd.setIgnoreAuthorship(true); |
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// configuratorAbcd.setMoveNewTaxaToDefaultClassification(false); |
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// if (configuratorAbcd != null){
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// abcdConfigurators.add(configuratorAbcd); |
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// } |
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//// unitIdsBioCase = new HashSet<String[]>(); |
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// bioCaseOccurrenceQuery = new OccurenceQuery(unitIdsBioCase); |
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// configuratorAbcd.setOccurenceQuery(bioCaseOccurrenceQuery); |
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// configuratorAbcd.setGetSiblings(true); |
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// if (dataImportView.getClassification() != null){
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// configuratorAbcd.setClassificationUuid(dataImportView.getClassification().getUuid()); |
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// } |
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// } |
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// for (GbifResponse response: biocaseResponses){
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// try {
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// dataSetResponse = new GbifQueryServiceWrapper().queryOriginalDataSet(response); |
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// dataSetUri = dataSetResponse.getEndpoint(); |
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// } catch (ClientProtocolException e) {
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// // TODO Auto-generated catch block |
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// e.printStackTrace(); |
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// } catch (IOException e) {
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// // TODO Auto-generated catch block |
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// e.printStackTrace(); |
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// } |
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// if (!response.getDataSetUri().equals(dataSetUri)){
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// configuratorAbcd = Abcd206ImportConfigurator.NewInstance(dataSetUri, null, false); |
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// configuratorAbcd.addMediaAsMediaSpecimen(true); |
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// configuratorAbcd.setIgnoreAuthorship(true); |
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// configuratorAbcd.setMoveNewTaxaToDefaultClassification(false); |
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// if (configuratorAbcd != null){
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// abcdConfigurators.add(configuratorAbcd); |
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// } |
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// unitIdsBioCase = new HashSet<String[]>(); |
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// bioCaseOccurrenceQuery = new OccurenceQuery(unitIdsBioCase); |
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// configuratorAbcd.setOccurenceQuery(bioCaseOccurrenceQuery); |
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// configuratorAbcd.setGetSiblings(true); |
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// if (dataImportView.getClassification() != null){
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// configuratorAbcd.setClassificationUuid(dataImportView.getClassification().getUuid()); |
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// } |
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// |
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// } |
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// tripleId = response.getTripleID(); |
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// unitIdsBioCase.add(tripleId); |
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// } |
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OccurenceQuery query = new OccurenceQuery(unitIdsGbif); |
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GbifImportConfigurator configurator = GbifImportConfigurator.newInstance(query); |
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configurator.setSourceReferenceTitle("Import Gbif data");
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// configurator.setQuery(query); |
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if (!checkedAbcdResults.isEmpty()){
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Job bioCaseJob = CdmStore.getImportManager().createIOServiceJob(abcdConfigurators); |
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CdmStore.getImportManager().run(bioCaseJob); |
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} |
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Job bioCaseJob = CdmStore.getImportManager().createIOServiceJob(abcdConfigurators); |
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CdmStore.getImportManager().run(bioCaseJob); |
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if (!unitIdsGbif.isEmpty()){
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OccurenceQuery query = new OccurenceQuery(unitIdsGbif); |
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GbifImportConfigurator configurator = GbifImportConfigurator.newInstance(query); |
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configurator.setSourceReferenceTitle("Import Gbif data");
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Job gbifJob = CdmStore.getImportManager().createIOServiceJob(configurator); |
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CdmStore.getImportManager().run(gbifJob); |
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Job gbifJob = CdmStore.getImportManager().createIOServiceJob(configurator); |
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CdmStore.getImportManager().run(gbifJob); |
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} |
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Also available in: Unified diff
extend specimen search result view