Revision 2fe68f38
Added by Patrick Plitzner about 5 years ago
| eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/descriptiveDataSet/DescriptiveDataSetComposite.java | ||
|---|---|---|
| 23 | 23 |
import org.eclipse.swt.widgets.Tree; |
| 24 | 24 |
|
| 25 | 25 |
import eu.etaxonomy.cdm.model.common.TermType; |
| 26 |
import eu.etaxonomy.cdm.model.description.Character; |
|
| 26 | 27 |
import eu.etaxonomy.cdm.model.description.FeatureTree; |
| 27 | 28 |
import eu.etaxonomy.cdm.model.name.Rank; |
| 28 | 29 |
import eu.etaxonomy.cdm.persistence.dto.TermDto; |
| ... | ... | |
| 43 | 44 |
private Text txtDescriptiveDataSet; |
| 44 | 45 |
private TermUuidComboViewer comboRankMin; |
| 45 | 46 |
private TermUuidComboViewer comboRankMax; |
| 46 |
private FeatureTreeEditorComposite featureTreeEditorComposite; |
|
| 47 |
private FeatureTreeEditorComposite<Character> featureTreeEditorComposite;
|
|
| 47 | 48 |
private TreeViewer taxonNodeTree; |
| 48 | 49 |
private List<TermDto> areas = new ArrayList<>(); |
| 49 | 50 |
private Text textAreaText; |
| ... | ... | |
| 134 | 135 |
btnChooseArea = new Button(composite, SWT.NONE); |
| 135 | 136 |
btnChooseArea.setImage(ImageResources.getImage(ImageResources.BROWSE_ICON)); |
| 136 | 137 |
|
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featureTreeEditorComposite = new FeatureTreeEditorComposite(this, SWT.NONE); |
|
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featureTreeEditorComposite = new FeatureTreeEditorComposite<Character>(this, SWT.NONE);
|
|
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featureTreeEditorComposite.setLayoutData(new GridData(SWT.FILL, SWT.FILL, true, true, 2, 1)); |
| 139 | 140 |
} |
| 140 | 141 |
|
| ... | ... | |
| 160 | 161 |
comboRankMax.setElement(max); |
| 161 | 162 |
} |
| 162 | 163 |
|
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public FeatureTreeEditorComposite getFeatureTreeEditorComposite() {
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|
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public FeatureTreeEditorComposite<Character> getFeatureTreeEditorComposite() {
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|
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return featureTreeEditorComposite; |
| 165 | 166 |
} |
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|
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public FeatureTree getCharacters(){
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|
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public FeatureTree<Character> getCharacters(){
|
|
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return featureTreeEditorComposite.getFeatureTree(); |
| 169 | 170 |
} |
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public void setCharacters(FeatureTree characters) {
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|
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public void setCharacters(FeatureTree<Character> characters) {
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|
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featureTreeEditorComposite.setSelectedTree(characters); |
| 172 | 173 |
} |
| 173 | 174 |
|
| eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/descriptiveDataSet/DescriptiveDataSetEditor.java | ||
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| 59 | 59 |
import eu.etaxonomy.cdm.api.service.ITermService; |
| 60 | 60 |
import eu.etaxonomy.cdm.model.common.DefinedTermBase; |
| 61 | 61 |
import eu.etaxonomy.cdm.model.common.TermType; |
| 62 |
import eu.etaxonomy.cdm.model.description.Character; |
|
| 62 | 63 |
import eu.etaxonomy.cdm.model.description.DescriptiveDataSet; |
| 63 | 64 |
import eu.etaxonomy.cdm.model.description.FeatureTree; |
| 64 | 65 |
import eu.etaxonomy.cdm.model.location.NamedArea; |
| ... | ... | |
| 288 | 289 |
} |
| 289 | 290 |
} |
| 290 | 291 |
} |
| 291 |
FeatureTree characters = composite.getCharacters(); |
|
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FeatureTree<Character> characters = composite.getCharacters();
|
|
| 292 | 293 |
if(characters!=null){
|
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//save characters because they can be modified in this editor |
| 294 | 295 |
characters.getDistinctFeatures().forEach(character->CdmStore.getService(ITermService.class).merge(character,true)); |
| eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/descriptiveDataSet/character/CharacterEditor.java | ||
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| 58 | 58 |
import eu.etaxonomy.cdm.api.service.IFeatureTreeService; |
| 59 | 59 |
import eu.etaxonomy.cdm.api.service.ITermService; |
| 60 | 60 |
import eu.etaxonomy.cdm.api.service.IVocabularyService; |
| 61 |
import eu.etaxonomy.cdm.model.common.DefinedTermBase; |
|
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import eu.etaxonomy.cdm.model.common.Representation; |
| 62 | 63 |
import eu.etaxonomy.cdm.model.common.TermType; |
| 63 | 64 |
import eu.etaxonomy.cdm.model.common.TermVocabulary; |
| ... | ... | |
| 95 | 96 |
public class CharacterEditor implements IFeatureTreeEditor,IConversationEnabled, ISelectionChangedListener, |
| 96 | 97 |
ModifyListener, IE4ViewerPart, IPartContentHasDetails, IPartContentHasSupplementalData, IDirtyMarkable {
|
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|
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private FeatureTreeEditorComposite characterTreeEditorComposite; |
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private FeatureTreeEditorComposite propertiesTreeEditorComposite; |
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private FeatureTreeEditorComposite structuresTreeEditorComposite; |
|
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private FeatureTreeEditorComposite<Character> characterTreeEditorComposite;
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private FeatureTreeEditorComposite<DefinedTermBase> propertiesTreeEditorComposite;
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|
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private FeatureTreeEditorComposite<DefinedTermBase> structuresTreeEditorComposite;
|
|
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private final FormToolkit formToolkit = new FormToolkit(Display.getDefault()); |
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|
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@Inject |
| ... | ... | |
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Collection<Character> characters = createCharacters((TreeSelection)structureTreeSelection, (TreeSelection)propertyTreeSelection); |
| 229 | 230 |
for (Character character : characters) {
|
| 230 | 231 |
//add new Character to feature tree |
| 231 |
FeatureNode parent = ((FeatureTree) characterTreeEditorComposite.getViewer().getInput()).getRoot();
|
|
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FeatureNode<Character> parent = ((FeatureTree<Character>) characterTreeEditorComposite.getViewer().getInput()).getRoot();
|
|
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vocabulary.addTerm(character); |
| 233 | 234 |
CdmStore.getService(IFeatureNodeService.class).createChildFeatureNode(parent, character); |
| 234 | 235 |
} |
| ... | ... | |
| 252 | 253 |
|
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} |
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|
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private FeatureTreeEditorComposite addFeatureTreeEditor(Composite composite_3) {
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FeatureTreeEditorComposite featureTreeEditorComposite = new FeatureTreeEditorComposite(composite_3, SWT.NONE);
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private <T extends DefinedTermBase> FeatureTreeEditorComposite<T> addFeatureTreeEditor(Composite composite_3) {
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FeatureTreeEditorComposite<T> featureTreeEditorComposite = new FeatureTreeEditorComposite<>(composite_3, SWT.NONE);
|
|
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featureTreeEditorComposite.setLayoutData(new GridData(SWT.FILL, SWT.FILL, true, true, 1, 1)); |
| 258 | 259 |
return featureTreeEditorComposite; |
| 259 | 260 |
} |
| ... | ... | |
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public static Collection<Character> createCharacters(TreeSelection structureTreeSelection, TreeSelection propertyTreeSelection){
|
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Set<Character> characters = new HashSet<>(); |
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//get selected structures and properties |
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Iterator<FeatureNode> structureIterator = structureTreeSelection.iterator(); |
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Iterator<FeatureNode<DefinedTermBase>> structureIterator = structureTreeSelection.iterator();
|
|
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|
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//create all combinations of structures and properties |
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while(structureIterator.hasNext()){
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FeatureNode structureNode = structureIterator.next(); |
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Iterator<FeatureNode> propertiesIterator = propertyTreeSelection.iterator(); |
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FeatureNode<DefinedTermBase> structureNode = structureIterator.next();
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Iterator<FeatureNode<DefinedTermBase>> propertiesIterator = propertyTreeSelection.iterator();
|
|
| 301 | 302 |
while(propertiesIterator.hasNext()){
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FeatureNode propertyNode = propertiesIterator.next(); |
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FeatureNode<DefinedTermBase> propertyNode = propertiesIterator.next();
|
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Representation structureRepresentation = structureNode.getTerm().getRepresentation(PreferencesUtil.getGlobalLanguage()); |
| 304 | 305 |
Representation propertyRepresentation = propertyNode.getTerm().getRepresentation(PreferencesUtil.getGlobalLanguage()); |
| 305 | 306 |
String label = null; |
| ... | ... | |
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// commit the conversation and start a new transaction immediately |
| 329 | 330 |
conversation.commit(true); |
| 330 | 331 |
|
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FeatureTree featureTree = characterTreeEditorComposite.getFeatureTree(); |
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FeatureTree<Character> featureTree = characterTreeEditorComposite.getFeatureTree();
|
|
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if(featureTree!=null){
|
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//save characters because they can be modified in this editor |
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featureTree.getDistinctFeatures().forEach(character->CdmStore.getService(ITermService.class).merge(character,true)); |
| ... | ... | |
| 382 | 383 |
} |
| 383 | 384 |
|
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@Override |
| 385 |
public List<FeatureTree> getRootEntities() {
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List<FeatureTree> root = new ArrayList<>(); |
|
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public List<FeatureTree<Character>> getRootEntities() {
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List<FeatureTree<Character>> root = new ArrayList<>();
|
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root.add(characterTreeEditorComposite.getFeatureTree()); |
| 388 | 389 |
return root; |
| 389 | 390 |
} |
| ... | ... | |
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return (IStructuredSelection) characterTreeEditorComposite.getViewer().getSelection(); |
| 424 | 425 |
} |
| 425 | 426 |
|
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public FeatureTree getCharacterTree(){
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public FeatureTree<Character> getCharacterTree(){
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return characterTreeEditorComposite.getFeatureTree(); |
| 428 | 429 |
} |
| 429 | 430 |
|
| ... | ... | |
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} |
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|
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private class FeatureTreeChooserListener extends SelectionAdapter{
|
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private FeatureTreeEditorComposite featureTreeEditorComposite; |
|
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private FeatureTreeEditorComposite<?> featureTreeEditorComposite;
|
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private TermType termType; |
| 440 | 441 |
|
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public FeatureTreeChooserListener(FeatureTreeEditorComposite featureTreeEditorComposite, TermType termType) {
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public FeatureTreeChooserListener(FeatureTreeEditorComposite<?> featureTreeEditorComposite, TermType termType) {
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super(); |
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this.featureTreeEditorComposite = featureTreeEditorComposite; |
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this.termType = termType; |
| eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/descriptiveDataSet/matrix/CharacterMatrix.java | ||
|---|---|---|
| 98 | 98 |
import eu.etaxonomy.cdm.api.service.dto.RowWrapperDTO; |
| 99 | 99 |
import eu.etaxonomy.cdm.api.service.dto.SpecimenRowWrapperDTO; |
| 100 | 100 |
import eu.etaxonomy.cdm.common.monitor.IRemotingProgressMonitor; |
| 101 |
import eu.etaxonomy.cdm.hibernate.HibernateProxyHelper; |
|
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import eu.etaxonomy.cdm.model.common.DefinedTermBase; |
|
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import eu.etaxonomy.cdm.model.description.Character; |
| 104 | 102 |
import eu.etaxonomy.cdm.model.description.DescriptionBase; |
| 105 | 103 |
import eu.etaxonomy.cdm.model.description.DescriptiveDataSet; |
| ... | ... | |
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natTable.doCommand(new ClientAreaResizeCommand(natTable)); |
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} |
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|
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private List<Character> initCharacterList(FeatureNode node){
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private List<Character> initCharacterList(FeatureNode<Character> node){
|
|
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List<Character> characters = new ArrayList<>(); |
| 276 | 274 |
node.getChildNodes().forEach(childNode-> |
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{
|
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DefinedTermBase term = childNode.getTerm(); |
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// FIXME #8146 this is currently checked via the termType of the tree |
|
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// in the init() method. This may be solved by adding generics to FeatureNode |
|
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// so that getTerm is typified. This would make this check obsolete |
|
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if(term.isInstanceOf(Character.class)){
|
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characters.add(HibernateProxyHelper.deproxy(term, Character.class)); |
|
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} |
|
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characters.add(childNode.getTerm()); |
|
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characters.addAll(initCharacterList(childNode)); |
| 286 | 278 |
}); |
| 287 | 279 |
return characters; |
| ... | ... | |
| 290 | 282 |
public void initDescriptiveDataSet(DescriptiveDataSet descriptiveDataSet){
|
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this.descriptiveDataSet = descriptiveDataSet; |
| 292 | 284 |
//get features/columns stored in descriptive data set |
| 293 |
FeatureTree tree = descriptiveDataSet.getDescriptiveSystem(); |
|
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FeatureTree<Character> tree = descriptiveDataSet.getDescriptiveSystem();
|
|
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characters = initCharacterList(tree.getRoot()); |
| 295 | 287 |
|
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//init state data for categorical features |
| eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/descriptive/e4/handler/DynamicFeatureMenuE4.java | ||
|---|---|---|
| 60 | 60 |
Object selectedElement = selection.getFirstElement(); |
| 61 | 61 |
|
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if (selectedElement instanceof DescriptionBase<?>) {
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FeatureTree featureTree = getFeatureTree((DescriptionBase<?>) selectedElement); |
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FeatureTree<?> featureTree = getFeatureTree((DescriptionBase<?>) selectedElement);
|
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|
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for (FeatureNode childNode : featureTree.getRootChildren()) {
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for (FeatureNode<?> childNode : featureTree.getRootChildren()) {
|
|
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createMenuItem(menu, childNode.getTerm(), globalLanguage); |
| 67 | 67 |
} |
| 68 | 68 |
} else if (selectedElement instanceof FeatureNodeContainer) {
|
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FeatureNode featureNode = ((FeatureNodeContainer) selectedElement) |
|
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FeatureNode<?> featureNode = ((FeatureNodeContainer) selectedElement)
|
|
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.getFeatureNode(); |
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|
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// add the feature to the menu |
| 73 | 73 |
createMenuItem(menu, featureNode.getTerm(), globalLanguage); |
| 74 | 74 |
|
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// add possible children to the menu |
| 76 |
for (FeatureNode childNode : featureNode.getChildNodes()) {
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|
| 76 |
for (FeatureNode<?> childNode : featureNode.getChildNodes()) {
|
|
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createMenuItem(menu, childNode.getTerm(), globalLanguage); |
| 78 | 78 |
} |
| 79 | 79 |
} else if (selectedElement instanceof DescriptionElementBase) {
|
| ... | ... | |
| 122 | 122 |
* @param description |
| 123 | 123 |
* @return |
| 124 | 124 |
*/ |
| 125 |
private FeatureTree getFeatureTree(DescriptionBase description) {
|
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| 126 |
FeatureTree featureTree = null; |
|
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private FeatureTree<?> getFeatureTree(DescriptionBase description) {
|
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| 126 |
FeatureTree<?> featureTree = null;
|
|
| 127 | 127 |
|
| 128 | 128 |
// TODO change this to the feature tree associated with this taxon |
| 129 | 129 |
// description |
| eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/featuretree/e4/FeatureTreeEditorComposite.java | ||
|---|---|---|
| 28 | 28 |
import org.eclipse.swt.widgets.Text; |
| 29 | 29 |
import org.eclipse.swt.widgets.Tree; |
| 30 | 30 |
|
| 31 |
import eu.etaxonomy.cdm.model.common.DefinedTermBase; |
|
| 31 | 32 |
import eu.etaxonomy.cdm.model.common.TermType; |
| 32 | 33 |
import eu.etaxonomy.cdm.model.description.FeatureTree; |
| 33 | 34 |
import eu.etaxonomy.taxeditor.editor.definedterm.TermTransfer; |
| ... | ... | |
| 44 | 45 |
* @since Jun 19, 2017 |
| 45 | 46 |
* |
| 46 | 47 |
*/ |
| 47 |
public class FeatureTreeEditorComposite extends Composite{
|
|
| 48 |
public class FeatureTreeEditorComposite <T extends DefinedTermBase> extends Composite{
|
|
| 48 | 49 |
|
| 49 |
private FeatureTree featureTree; |
|
| 50 |
private FeatureTree<T> featureTree;
|
|
| 50 | 51 |
|
| 51 | 52 |
private Label label_title; |
| 52 | 53 |
private Text text_title; |
| ... | ... | |
| 180 | 181 |
btnOpenFeatureTree.addSelectionListener(new SelectionAdapter(){
|
| 181 | 182 |
@Override |
| 182 | 183 |
public void widgetSelected(SelectionEvent e) {
|
| 183 |
FeatureTree tree = FeatureTreeSelectionDialog.select(getDisplay().getActiveShell(), |
|
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FeatureTree<T> tree = FeatureTreeSelectionDialog.select(getDisplay().getActiveShell(),
|
|
| 184 | 185 |
null, termType); |
| 185 | 186 |
if(tree!=null){
|
| 186 | 187 |
setSelectedTree(tree); |
| ... | ... | |
| 193 | 194 |
} |
| 194 | 195 |
} |
| 195 | 196 |
|
| 196 |
public void setSelectedTree(FeatureTree featureTree) {
|
|
| 197 |
public void setSelectedTree(FeatureTree<T> featureTree) {
|
|
| 197 | 198 |
this.featureTree = featureTree; |
| 198 | 199 |
|
| 199 | 200 |
viewer.setInput(featureTree); |
| ... | ... | |
| 208 | 209 |
} |
| 209 | 210 |
} |
| 210 | 211 |
|
| 211 |
public FeatureTree getFeatureTree() {
|
|
| 212 |
public FeatureTree<T> getFeatureTree() {
|
|
| 212 | 213 |
return featureTree; |
| 213 | 214 |
} |
| 214 | 215 |
|
| eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/model/FeatureNodeContainer.java | ||
|---|---|---|
| 41 | 41 |
|
| 42 | 42 |
|
| 43 | 43 |
|
| 44 |
private FeatureNode featureNode; |
|
| 44 |
private FeatureNode<Feature> featureNode;
|
|
| 45 | 45 |
private List<FeatureNodeContainer> children = new ArrayList<FeatureNodeContainer>(); |
| 46 | 46 |
private List<DescriptionElementBase> descriptionElements = new ArrayList<DescriptionElementBase>(); |
| 47 | 47 |
|
| ... | ... | |
| 64 | 64 |
* @param description |
| 65 | 65 |
* @return |
| 66 | 66 |
*/ |
| 67 |
protected void findLeaves(FeatureNode featureNode) {
|
|
| 67 |
protected void findLeaves(FeatureNode<Feature> featureNode) {
|
|
| 68 | 68 |
if(featureNode.isLeaf()){
|
| 69 | 69 |
buildLeaf(featureNode); |
| 70 | 70 |
}else{
|
| 71 |
for(FeatureNode childNode : featureNode.getChildNodes()){
|
|
| 71 |
for(FeatureNode<Feature> childNode : featureNode.getChildNodes()){
|
|
| 72 | 72 |
findLeaves(childNode); |
| 73 | 73 |
} |
| 74 | 74 |
} |
| ... | ... | |
| 80 | 80 |
* @param description |
| 81 | 81 |
* @return |
| 82 | 82 |
*/ |
| 83 |
private void buildLeaf(FeatureNode featureNode){
|
|
| 84 |
if(featureNode.getFeature() == null){
|
|
| 83 |
private void buildLeaf(FeatureNode<Feature> featureNode){
|
|
| 84 |
if(featureNode.getTerm() == null){
|
|
| 85 | 85 |
throw new IllegalArgumentException("The given feature node does not have a feature.");
|
| 86 | 86 |
} |
| 87 | 87 |
|
| 88 |
Feature feature = (Feature) HibernateProxyHelper.deproxy(featureNode.getFeature());
|
|
| 88 |
Feature feature = HibernateProxyHelper.deproxy(featureNode.getTerm());
|
|
| 89 | 89 |
|
| 90 | 90 |
// get feature node container for the given feature |
| 91 | 91 |
FeatureNodeContainer container = containerTree.getFeatureNodeContainer(feature); |
| ... | ... | |
| 140 | 140 |
*/ |
| 141 | 141 |
private void buildBranch(){
|
| 142 | 142 |
if(getParent() == null){
|
| 143 |
FeatureNode parentFeatureNode = getFeatureNode().getParent(); |
|
| 143 |
FeatureNode<Feature> parentFeatureNode = getFeatureNode().getParent();
|
|
| 144 | 144 |
|
| 145 | 145 |
if(parentFeatureNode.isRoot()){
|
| 146 | 146 |
containerTree.getRoot().addChild(this); |
| ... | ... | |
| 277 | 277 |
* |
| 278 | 278 |
* @param featureNode a {@link eu.etaxonomy.cdm.model.description.FeatureNode} object.
|
| 279 | 279 |
*/ |
| 280 |
public void setFeatureNode(FeatureNode featureNode) {
|
|
| 280 |
public void setFeatureNode(FeatureNode<Feature> featureNode) {
|
|
| 281 | 281 |
this.featureNode = featureNode; |
| 282 | 282 |
} |
| 283 | 283 |
|
| ... | ... | |
| 286 | 286 |
* |
| 287 | 287 |
* @return a {@link eu.etaxonomy.cdm.model.description.FeatureNode} object.
|
| 288 | 288 |
*/ |
| 289 |
public FeatureNode getFeatureNode() {
|
|
| 289 |
public FeatureNode<Feature> getFeatureNode() {
|
|
| 290 | 290 |
return featureNode; |
| 291 | 291 |
} |
| 292 | 292 |
|
| ... | ... | |
| 297 | 297 |
*/ |
| 298 | 298 |
public Feature getFeature(){
|
| 299 | 299 |
if(featureNode != null){
|
| 300 |
return featureNode.getFeature();
|
|
| 300 |
return featureNode.getTerm();
|
|
| 301 | 301 |
} |
| 302 | 302 |
return null; |
| 303 | 303 |
} |
Also available in: Unified diff
ref #6794 Adapt taxeditor to model changes (feature tree/node generics)