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/**
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* Copyright (C) 2013 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.taxeditor.ui.section.occurrence.dna;
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import java.net.URI;
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import java.net.URISyntaxException;
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import org.eclipse.swt.widgets.Text;
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import eu.etaxonomy.cdm.model.term.DefinedTerm;
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import eu.etaxonomy.cdm.model.term.TermType;
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import eu.etaxonomy.cdm.model.molecular.Sequence;
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import eu.etaxonomy.cdm.model.molecular.SequenceString;
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import eu.etaxonomy.taxeditor.preference.Resources;
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import eu.etaxonomy.taxeditor.ui.combo.term.TermComboElement;
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import eu.etaxonomy.taxeditor.ui.element.CdmFormFactory;
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import eu.etaxonomy.taxeditor.ui.element.ICdmFormElement;
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import eu.etaxonomy.taxeditor.ui.element.TextWithLabelElement;
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import eu.etaxonomy.taxeditor.ui.element.UriWithLabelElement;
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import eu.etaxonomy.taxeditor.ui.section.AbstractCdmDetailElement;
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/**
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* @author pplitzner
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* @date 19.12.2013
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*/
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public class SequenceGeneralDetailElement extends AbstractCdmDetailElement<Sequence> {
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private TermComboElement<DefinedTerm> comboMarker;
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private TextWithLabelElement textConsensusSequence;
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private TextWithLabelElement textGeneticAccessNo;
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private UriWithLabelElement textNCBIUri;
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private UriWithLabelElement textENAUri;
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private UriWithLabelElement textDDBJUri;
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private TextWithLabelElement textBoldProcessID;
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private UriWithLabelElement textBoldUri;
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/**
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* @param formFactory
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* @param formElement
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*/
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public SequenceGeneralDetailElement(CdmFormFactory formFactory, ICdmFormElement formElement) {
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super(formFactory, formElement);
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}
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/*
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* (non-Javadoc)
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*
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* @see
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* eu.etaxonomy.taxeditor.section.AbstractCdmDetailElement#createControls
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* (eu.etaxonomy.taxeditor.forms.ICdmFormElement, java.lang.Object, int)
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*/
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@Override
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protected void createControls(ICdmFormElement formElement, Sequence entity, int style) {
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comboMarker = formFactory.createDefinedTermComboElement(TermType.DnaMarker, formElement, "DNA Marker", entity.getDnaMarker(), style);
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textConsensusSequence = formFactory.createTextWithLabelElement(formElement, "Consensus Sequence 5'->3'", entity.getConsensusSequence().getString(), style);
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URI genBankUri = null;
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URI emblUri = null;
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URI ddbjUri = null;
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URI boldUri = null;
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try{
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genBankUri = entity.getGenBankUri();
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emblUri = entity.getEmblUri();
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ddbjUri = entity.getDdbjUri();
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boldUri = entity.getBoldUri();
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}
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catch(URISyntaxException e){
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}
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textGeneticAccessNo = formFactory.createTextWithLabelElement(formElement, "Genetic Acc. No.", entity.getGeneticAccessionNumber(), style);
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textNCBIUri = formFactory.createUriWithLabelElement(formElement, "NCBI URI", genBankUri, style);
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((Text) textNCBIUri.getMainControl()).setEditable(false);
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textENAUri = formFactory.createUriWithLabelElement(formElement, "ENA URI", emblUri, style);
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((Text) textENAUri.getMainControl()).setEditable(false);
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textDDBJUri = formFactory.createUriWithLabelElement(formElement, "DDBJ URI", ddbjUri, style);
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((Text) textDDBJUri.getMainControl()).setEditable(false);
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textBoldProcessID = formFactory.createTextWithLabelElement(formElement, "BOLD Process ID", entity.getBoldProcessId(), style);
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textBoldUri = formFactory.createUriWithLabelElement(formElement, "BOLD URI", boldUri, style);
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((Text) textBoldUri.getMainControl()).setEditable(false);
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((Text) textBoldUri.getMainControl()).setToolTipText("Query BOLD");
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}
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/*
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* (non-Javadoc)
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*
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* @see
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* eu.etaxonomy.taxeditor.section.AbstractCdmDetailElement#handleEvent(java
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* .lang.Object)
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*/
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@Override
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public void handleEvent(Object eventSource) {
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if(eventSource==comboMarker){
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getEntity().setDnaMarker(comboMarker.getSelection());
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}
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else if(eventSource==textConsensusSequence){
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SequenceString consensusSequence = getEntity().getConsensusSequence();
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if(consensusSequence==null){
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consensusSequence = SequenceString.NewInstance();
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}
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consensusSequence.setString(textConsensusSequence.getText());
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getEntity().setConsensusSequence(consensusSequence);
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}
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else if(eventSource==textGeneticAccessNo){
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textGeneticAccessNo.setBackground(getPersistentBackground());
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getEntity().setGeneticAccessionNumber(textGeneticAccessNo.getText());
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if(textGeneticAccessNo.getText()!=null && !textGeneticAccessNo.getText().isEmpty()){
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try {
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textNCBIUri.setParsedText(getEntity().getGenBankUri());
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textENAUri.setParsedText(getEntity().getEmblUri());
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textDDBJUri.setParsedText(getEntity().getDdbjUri());
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} catch (URISyntaxException e) {
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textGeneticAccessNo.setBackground(getColor(Resources.COLOR_PARSE_ERROR));
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}
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}
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else{
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textNCBIUri.setText("");
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textENAUri.setText("");
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textDDBJUri.setText("");
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}
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}
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else if(eventSource==textBoldProcessID){
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textBoldProcessID.setBackground(getPersistentBackground());
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getEntity().setBoldProcessId(textBoldProcessID.getText());
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if(textBoldProcessID.getText()!=null && !textBoldProcessID.getText().isEmpty()){
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try {
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textBoldUri.setParsedText(getEntity().getBoldUri());
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} catch (URISyntaxException e) {
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textBoldProcessID.setBackground(getColor(Resources.COLOR_PARSE_ERROR));
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}
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}
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else{
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textBoldUri.setText("");
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}
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}
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}
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}
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