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// $Id$
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/**
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* Copyright (C) 2015 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.taxeditor.molecular.handler;
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import info.bioinfweb.libralign.alignmentarea.AlignmentArea;
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import info.bioinfweb.libralign.dataarea.implementations.pherogram.PherogramArea;
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import info.bioinfweb.libralign.pherogram.PherogramComponent;
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import java.util.Iterator;
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import org.eclipse.core.commands.AbstractHandler;
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import org.eclipse.core.commands.ExecutionEvent;
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import org.eclipse.core.commands.ExecutionException;
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import org.eclipse.ui.IWorkbenchPart;
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import eu.etaxonomy.taxeditor.model.AbstractUtility;
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import eu.etaxonomy.taxeditor.molecular.editor.AlignmentEditor;
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import eu.etaxonomy.taxeditor.molecular.editor.PherogramViewPart;
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/**
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* Abstract handler implementation allows to performs the concrete operation either on an instance of
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* {@link PherogramViewPart} or all {@link AlignmentArea}s inside an instance of {@link AlignmentEditor}.
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*
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* @author Ben Stöver
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* @date 23.06.2015
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*/
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public abstract class AbstractPherogramComponentHandler extends AbstractHandler {
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@Override
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public Object execute(ExecutionEvent event) throws ExecutionException {
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IWorkbenchPart activePart = AbstractUtility.getActivePart();
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if (activePart instanceof AlignmentEditor) {
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AlignmentEditor editor = (AlignmentEditor)activePart;
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Iterator<Integer> idIterator = editor.getReadsArea().getAlignmentModel().sequenceIDIterator();
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while (idIterator.hasNext()) {
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PherogramArea area = editor.getPherogramArea(idIterator.next());
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if (area != null) {
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doExecute(event, area);
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}
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}
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}
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else if (activePart instanceof PherogramViewPart) {
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doExecute(event, ((PherogramViewPart)activePart).getPherogramView().getTraceCurveView());
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}
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return null;
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}
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public abstract void doExecute(ExecutionEvent event, PherogramComponent component) throws ExecutionException;
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}
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