Revision 118433fc
Added by Patrick Plitzner almost 6 years ago
| eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/io/CDMSequenceMatrixAdapter.java | ||
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import eu.etaxonomy.cdm.model.molecular.Sequence; |
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import eu.etaxonomy.cdm.model.molecular.SingleReadAlignment; |
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import eu.etaxonomy.taxeditor.molecular.editor.AlignmentEditor;
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import eu.etaxonomy.taxeditor.molecular.editor.e4.AlignmentEditorE4;
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import eu.etaxonomy.taxeditor.molecular.l10n.Messages; |
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import info.bioinfweb.commons.bio.CharacterStateSetType; |
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import info.bioinfweb.commons.io.W3CXSConstants; |
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writeMetadataEvents(receiver, sequenceID, PREDICATE_HAS_LEFT_CUT_POSITION, W3CXSConstants.DATA_TYPE_INT, singleRead.getLeftCutPosition()); |
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writeMetadataEvents(receiver, sequenceID, PREDICATE_HAS_RIGHT_CUT_POSITION, W3CXSConstants.DATA_TYPE_INT, singleRead.getRightCutPosition()); |
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URI pherogramURI = AlignmentEditor.getPherogramURI(singleRead.getSingleRead()); |
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URI pherogramURI = AlignmentEditorE4.getPherogramURI(singleRead.getSingleRead());
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if (pherogramURI != null) {
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JPhyloIOWritingUtils.writeTerminalResourceMetadata(receiver, createMetadataID(sequenceID, PREDICATE_HAS_PHEROGRAM), |
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null, PREDICATE_HAS_PHEROGRAM, pherogramURI); |
Also available in: Unified diff
ref #6913 Remove alignment editor