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/**
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* Copyright (C) 2017 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.taxeditor.editor.workingSet.matrix;
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import java.util.ArrayList;
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import java.util.Collections;
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import java.util.List;
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import eu.etaxonomy.cdm.model.description.CategoricalData;
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import eu.etaxonomy.cdm.model.description.Feature;
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import eu.etaxonomy.cdm.model.description.FeatureTree;
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import eu.etaxonomy.cdm.model.description.QuantitativeData;
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import eu.etaxonomy.cdm.model.description.SpecimenDescription;
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import eu.etaxonomy.cdm.model.description.State;
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import eu.etaxonomy.cdm.model.description.WorkingSet;
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import eu.etaxonomy.cdm.model.name.Rank;
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import eu.etaxonomy.cdm.model.occurrence.DerivedUnit;
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import eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationType;
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/**
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* @author pplitzner
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* @since Nov 26, 2017
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*
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*/
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public class DataSource {
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private static final Feature LEAF_COLOR_FEATURE = Feature.NewInstance("color of the leaf", "leaf color", "leaf color");
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private static final Feature LEAF_LENGTH_FEATURE = Feature.NewInstance("length of the leaf", "Leaf length", "leaf length");
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public static WorkingSet getWorkingSet(){
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FeatureTree tree = FeatureTree.NewInstance(getFeatures());
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WorkingSet workingSet = WorkingSet.NewInstance();
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workingSet.setDescriptiveSystem(tree);
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workingSet.setMaxRank(Rank.GENUS());
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workingSet.setMinRank(Rank.SUBSPECIES());
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getDescriptions().forEach(description -> workingSet.addDescription(description));
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workingSet.setLabel("PP-Wset");
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return workingSet;
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}
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public static List<SpecimenDescription> getDescriptions(){
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List<SpecimenDescription> descriptions = new ArrayList<>();
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SpecimenDescription description = createDescription(0.3f, 2.4f, "blue");
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DerivedUnit derivedUnit = DerivedUnit.NewInstance(SpecimenOrObservationType.PreservedSpecimen);
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derivedUnit.setAccessionNumber("B 10 35489");
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description.setDescribedSpecimenOrObservation(derivedUnit);
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SpecimenDescription description2 = createDescription(1.6f, 6.4f, "red");
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DerivedUnit derivedUnit2 = DerivedUnit.NewInstance(SpecimenOrObservationType.PreservedSpecimen);
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derivedUnit2.setAccessionNumber("B 10 44556");
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description2.setDescribedSpecimenOrObservation(derivedUnit2);
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descriptions.add(description);
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descriptions.add(description2);
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return descriptions;
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}
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private static List<Feature> getFeatures(){
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List<Feature> features = new ArrayList<>();
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features.add(LEAF_LENGTH_FEATURE);
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features.add(LEAF_COLOR_FEATURE);
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return features;
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}
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private static SpecimenDescription createDescription(Float min, Float max, String colorLabel) {
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SpecimenDescription desc = SpecimenDescription.NewInstance();
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QuantitativeData length = QuantitativeData.NewInstance(LEAF_LENGTH_FEATURE);
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length.setMinimum(min, Collections.emptySet());
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length.setMaximum(max, Collections.emptySet());
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desc.addElement(length);
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CategoricalData color = CategoricalData.NewInstance(LEAF_COLOR_FEATURE);
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color.addStateData(State.NewInstance(colorLabel, colorLabel, colorLabel));
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desc.addElement(color);
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return desc;
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}
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}
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