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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.taxeditor.io;
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import java.io.File;
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import java.io.InputStream;
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import java.nio.file.Files;
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import java.nio.file.Path;
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import java.nio.file.Paths;
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import java.util.List;
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import java.util.UUID;
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import org.apache.commons.io.IOUtils;
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import org.eclipse.core.runtime.Assert;
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import org.eclipse.core.runtime.IProgressMonitor;
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import org.eclipse.core.runtime.IStatus;
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import org.eclipse.core.runtime.Status;
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import org.eclipse.core.runtime.jobs.Job;
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import org.eclipse.swt.widgets.Display;
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import eu.etaxonomy.cdm.api.application.CdmApplicationState;
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import eu.etaxonomy.cdm.api.application.ICdmRepository;
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import eu.etaxonomy.cdm.common.monitor.IRemotingProgressMonitor;
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import eu.etaxonomy.cdm.io.common.IImportConfigurator;
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import eu.etaxonomy.cdm.io.common.IImportConfigurator.SOURCE_TYPE;
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import eu.etaxonomy.cdm.io.common.ImportConfiguratorBase;
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import eu.etaxonomy.cdm.io.common.ImportResult;
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import eu.etaxonomy.cdm.io.descriptive.owl.in.StructureTreeOwlImportConfigurator;
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import eu.etaxonomy.cdm.io.distribution.excelupdate.ExcelDistributionUpdateConfigurator;
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import eu.etaxonomy.cdm.io.dwca.in.DwcaImportConfigurator;
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import eu.etaxonomy.cdm.io.excel.taxa.NormalExplicitImportConfigurator;
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import eu.etaxonomy.cdm.io.jaxb.JaxbImportConfigurator;
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import eu.etaxonomy.cdm.io.reference.endnote.in.EndnoteImportConfigurator;
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import eu.etaxonomy.cdm.io.sdd.in.SDDImportConfigurator;
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import eu.etaxonomy.cdm.io.service.IIOService;
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import eu.etaxonomy.cdm.io.specimen.abcd206.in.Abcd206ImportConfigurator;
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import eu.etaxonomy.cdm.io.specimen.excel.in.SpecimenCdmExcelImportConfigurator;
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import eu.etaxonomy.cdm.io.specimen.gbif.in.GbifImportConfigurator;
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import eu.etaxonomy.cdm.io.specimen.gbif.in.GbifImportState;
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import eu.etaxonomy.cdm.io.tcsxml.in.TcsXmlImportConfigurator;
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import eu.etaxonomy.taxeditor.event.EventUtility;
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import eu.etaxonomy.taxeditor.event.WorkbenchEventConstants;
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import eu.etaxonomy.taxeditor.model.AbstractUtility;
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import eu.etaxonomy.taxeditor.model.MessagingUtils;
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import eu.etaxonomy.taxeditor.operation.IPostMoniteredOperationEnabled;
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import eu.etaxonomy.taxeditor.store.CdmStore;
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import eu.etaxonomy.taxeditor.store.internal.TaxeditorStorePlugin;
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/**
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* @author n.hoffmann
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* @created Sep 11, 2009
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*/
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public class ImportManager extends AbstractIOManager<IImportConfigurator> implements IPostMoniteredOperationEnabled {
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String importSuccessMessage = "The import was successful.";
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String updateSuccessMessage = "The update was successful.";
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private ImportManager(ICdmRepository applicationConfiguration) {
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super(applicationConfiguration);
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}
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public static ImportManager NewInstance(
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ICdmRepository applicationConfiguration) {
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return new ImportManager(applicationConfiguration);
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}
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// /**
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// * Use when importing data into the current application context
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// *
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// * @param configurator
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// * a {@link eu.etaxonomy.cdm.io.common.IImportConfigurator}
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// * object.
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// * @return a {@link org.eclipse.core.runtime.jobs.Job} object.
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// */
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// @Override
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// protected Job createIOJob(final IImportConfigurator configurator) {
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// Assert.isNotNull(configurator, "Configuration may not be null");
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//
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// final Display display = Display.getDefault();
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//
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// Job job = new Job("Import: " + configurator.getClass().getSimpleName()) {
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//
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// @Override
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// protected IStatus run(IProgressMonitor monitor) {
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// monitor.beginTask("Importing data", 100);
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// configurator.setProgressMonitor(CdmProgressMonitorAdapter
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// .CreateSubMonitor(monitor, 70));
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//
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// monitor.worked(5);
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//
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// CdmDefaultImport<IImportConfigurator> importer = new CdmDefaultImport<>();
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// importer.setCdmAppController(applicationConfiguration);
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// monitor.worked(5);
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// ImportResult importResult = null;
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// try {
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// importResult = importer.invoke(configurator);
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//
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// monitor.worked(80);
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// } catch (RuntimeException e) {
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// MessagingUtils.messageDialog(
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// "Error importing data",
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// this,
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// "An error occurred while"
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// + "importing from source '"
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// + configurator.getSourceNameString()
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// + "'.\n"
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// + "Please check error log for details.", e);
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// }
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//
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// monitor.worked(5);
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// monitor.done();
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//
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//
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// final StringBuilder reportText = new StringBuilder();
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// if(importResult!=null){
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// List<byte[]> reports = importResult.getReports();
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// for (byte[] bs : reports) {
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// reportText.append(new String(bs));
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// }
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// }
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// display.asyncExec(new Runnable() {
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//
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// @Override
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// public void run() {
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// // display reports with possibility to save
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// ReportTextDialog dialog = new ReportTextDialog(PlatformUI.getWorkbench().getActiveWorkbenchWindow().getShell());
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// dialog.setTitle(configurator.getClass().getSimpleName()+" Report");
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// dialog.setReportText(reportText.toString());
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// dialog.open();
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//
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// CdmStore.getContextManager().notifyContextRefresh();
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//
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// }
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// });
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//
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// return Status.OK_STATUS;
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// }
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// };
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//
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// return job;
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//
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// }
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public Job createIOServiceJob(IImportConfigurator configurator, InputStream is, SOURCE_TYPE type) {
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try {
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return createIOServiceJob(configurator, IOUtils.toByteArray(is), type);
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} catch (Exception e) {
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MessagingUtils.errorDialog("Error importing input stream",
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this,
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e.getMessage(),
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TaxeditorStorePlugin.PLUGIN_ID,
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e,
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true);
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}
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return null;
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}
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public Job createIOServiceJob(IImportConfigurator configurator, File importFile, SOURCE_TYPE type) {
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Path path = Paths.get(importFile.toURI());
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try {
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return createIOServiceJob(configurator, Files.readAllBytes(path), type);
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} catch (Exception e) {
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MessagingUtils.errorDialog("Error importing file",
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this,
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e.getMessage(),
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TaxeditorStorePlugin.PLUGIN_ID,
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e,
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true);
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}
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return null;
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}
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public Job createIOServiceJob(final IImportConfigurator configurator, final byte[] data, final SOURCE_TYPE type) {
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Assert.isNotNull(configurator, "Configuration may not be null");
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final Display display = Display.getDefault();
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Job job = new Job("Import: " + configurator.getClass().getSimpleName()) {
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@Override
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protected IStatus run(IProgressMonitor monitor) {
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monitor.beginTask("Importing data", IProgressMonitor.UNKNOWN);
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IIOService ioService = CdmApplicationState.getIOService();
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ImportResult result = ioService.importData(configurator, data, type);
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monitor.done();
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display.asyncExec(new Runnable() {
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@Override
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public void run() {
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CdmStore.getContextManager().notifyContextRefresh();
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}
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});
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showResult(configurator.getClass().getSimpleName(), display, result, importSuccessMessage);
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return Status.OK_STATUS;
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}
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};
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return job;
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}
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public void runMoniteredOperation(IImportConfigurator configurator, InputStream is, SOURCE_TYPE type) {
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try {
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runMoniteredOperation(configurator, IOUtils.toByteArray(is), type);
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} catch (Exception e) {
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MessagingUtils.errorDialog("Error importing input stream",
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this,
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e.getMessage(),
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TaxeditorStorePlugin.PLUGIN_ID,
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e,
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true);
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}
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}
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public void runMoniteredOperation(IImportConfigurator configurator, SOURCE_TYPE type) {
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byte[] data = new byte[1];
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try {
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runMoniteredOperation(configurator, data, type);
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} catch (Exception e) {
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MessagingUtils.errorDialog("Error importing input stream",
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this,
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e.getMessage(),
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TaxeditorStorePlugin.PLUGIN_ID,
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e,
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true);
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}
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}
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public void runMoniteredOperation(IImportConfigurator configurator, File importFile, SOURCE_TYPE type) {
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Path path = Paths.get(importFile.toURI());
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try {
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runMoniteredOperation(configurator, Files.readAllBytes(path), type);
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} catch (Exception e) {
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MessagingUtils.errorDialog("Error importing input stream",
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this,
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e.getMessage(),
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TaxeditorStorePlugin.PLUGIN_ID,
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e,
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true);
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}
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}
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public void runMoniteredOperation(final IImportConfigurator configurator, final byte[] data, final SOURCE_TYPE type) {
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IIOService ioService = CdmApplicationState.getIOService();
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final UUID uuid = ioService.monitImportData(configurator, data, type);
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Display.getDefault().asyncExec(new Runnable() {
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@Override
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public void run() {
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AbstractUtility.executeMoniteredOperation("Import: " + configurator.getClass().getSimpleName(),
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uuid,
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1000,
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false,
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ImportManager.this,
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null, true, true);
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}
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});
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}
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private IImportConfigurator getConfigurator(TYPE type) {
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Assert.isNotNull(type, "Type should not be null");
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switch (type) {
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case Jaxb:
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return JaxbImportConfigurator.NewInstance(null, null);
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case Tcs:
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return TcsXmlImportConfigurator.NewInstance(null, null);
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case Endnote:
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return EndnoteImportConfigurator.NewInstance(null, null);
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case Excel_Taxa:
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return NormalExplicitImportConfigurator.NewInstance(null, null,
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null, null);
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case Abcd:
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return Abcd206ImportConfigurator.NewInstance(null, null);
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case Sdd:
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return SDDImportConfigurator.NewInstance(null, null);
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case SpecimenCdmExcel:
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return SpecimenCdmExcelImportConfigurator.NewInstance(null, null);
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case SpecimenSearch:
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return Abcd206ImportConfigurator.NewInstance(null, null);
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case Gbif:
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return DwcaImportConfigurator.NewInstance(null, null);
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case Excel_Distribution:
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return ExcelDistributionUpdateConfigurator.NewInstance(null, null, null);
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case OWL:
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return StructureTreeOwlImportConfigurator.NewInstance(null);
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default:
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MessagingUtils.notImplementedMessage(this);
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throw new IllegalArgumentException("Import not supported yet");
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}
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}
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/**
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* <p>
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* JaxbConfigurator
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* </p>
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*
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* @return a {@link eu.etaxonomy.cdm.io.jaxb.JaxbImportConfigurator} object.
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*/
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public final JaxbImportConfigurator JaxbConfigurator() {
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return (JaxbImportConfigurator) getConfigurator(TYPE.Jaxb);
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}
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/**
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* <p>
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* TcsConfigurator
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* </p>
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*
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* @return a {@link eu.etaxonomy.cdm.io.tcsxml.in.TcsXmlImportConfigurator}
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* object.
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*/
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public final TcsXmlImportConfigurator TcsConfigurator() {
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return (TcsXmlImportConfigurator) getConfigurator(TYPE.Tcs);
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}
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331
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/**
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* <p>
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* EndnoteConfigurator
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* </p>
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*
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* @return a
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* {@link eu.etaxonomy.cdm.io.reference.endnote.in.EndnoteImportConfigurator}
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* object.
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*/
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public final EndnoteImportConfigurator EndnoteConfigurator() {
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return (EndnoteImportConfigurator) getConfigurator(TYPE.Endnote);
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}
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343
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344
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/**
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345
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* <p>
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* NormalExplicitConfigurator
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347
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* </p>
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348
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*
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349
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* @return a
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350
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* {@link eu.etaxonomy.cdm.io.excel.taxa.NormalExplicitImportConfigurator}
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351
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* object.
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352
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*/
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public final NormalExplicitImportConfigurator NormalExplicitConfigurator() {
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return (NormalExplicitImportConfigurator) getConfigurator(TYPE.Excel_Taxa);
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}
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356
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357
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/**
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358
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* <p>
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359
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* SddConfigurator
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360
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* </p>
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361
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*
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362
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* @return a {@link eu.etaxonomy.cdm.io.sdd.in.SDDImportConfigurator}
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363
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* object.
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364
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*/
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365
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public final SDDImportConfigurator SddConfigurator() {
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366
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return (SDDImportConfigurator) getConfigurator(TYPE.Sdd);
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367
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}
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368
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|
369
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/**
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370
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* <p>
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371
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* AbcdConfigurator
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372
|
* </p>
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373
|
*
|
374
|
* @return a
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375
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* {@link eu.etaxonomy.cdm.io.specimen.abcd206.in.Abcd206ImportConfigurator}
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376
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* object.
|
377
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*/
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378
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public final Abcd206ImportConfigurator AbcdConfigurator() {
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379
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return (Abcd206ImportConfigurator) getConfigurator(TYPE.Abcd);
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380
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}
|
381
|
|
382
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public SpecimenCdmExcelImportConfigurator SpecimenCdmExcelImportConfigurator() {
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383
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return (SpecimenCdmExcelImportConfigurator) getConfigurator(TYPE.SpecimenCdmExcel);
|
384
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}
|
385
|
|
386
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public DwcaImportConfigurator DwcaImportConfigurator() {
|
387
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return (DwcaImportConfigurator) getConfigurator(TYPE.Gbif);
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388
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}
|
389
|
|
390
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public final StructureTreeOwlImportConfigurator OwlImportConfigurator() {
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391
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return (StructureTreeOwlImportConfigurator) getConfigurator(TYPE.OWL);
|
392
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}
|
393
|
|
394
|
|
395
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/**
|
396
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* {@inheritDoc}
|
397
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*/
|
398
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@Override
|
399
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public void postOperation(IRemotingProgressMonitor monitor) {
|
400
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Display.getDefault().asyncExec(new Runnable() {
|
401
|
|
402
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@Override
|
403
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public void run() {
|
404
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CdmStore.getContextManager().notifyContextRefresh();
|
405
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}
|
406
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});
|
407
|
|
408
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}
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409
|
|
410
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public Job createIOServiceJob(final GbifImportConfigurator<GbifImportState, InputStream> configurator) {
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411
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Assert.isNotNull(configurator, "Configuration may not be null");
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412
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final Display display = Display.getDefault();
|
413
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Job job = new Job("Import: " + " Dwca") {
|
414
|
|
415
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@Override
|
416
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protected IStatus run(IProgressMonitor monitor) {
|
417
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monitor.beginTask("Importing data", IProgressMonitor.UNKNOWN);
|
418
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IIOService ioService = CdmApplicationState.getIOService();
|
419
|
|
420
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ImportResult result = ioService.importDataFromStream(configurator);
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421
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monitor.done();
|
422
|
|
423
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// display.asyncExec(new Runnable() {
|
424
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//
|
425
|
// @Override
|
426
|
// public void run() {
|
427
|
// CdmStore.getContextManager().notifyContextRefresh();
|
428
|
// }
|
429
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// });
|
430
|
showResult("Gbif Import", display, result, importSuccessMessage);
|
431
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return Status.OK_STATUS;
|
432
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}
|
433
|
};
|
434
|
|
435
|
return job;
|
436
|
|
437
|
}
|
438
|
|
439
|
public Job createIOServiceJob(final Abcd206ImportConfigurator configurator) {
|
440
|
Assert.isNotNull(configurator, "Configuration may not be null");
|
441
|
final Display display = Display.getDefault();
|
442
|
Job job = new Job("Import: " + " Dwca") {
|
443
|
|
444
|
@Override
|
445
|
protected IStatus run(IProgressMonitor monitor) {
|
446
|
monitor.beginTask("Importing data", IProgressMonitor.UNKNOWN);
|
447
|
IIOService ioService = CdmApplicationState.getIOService();
|
448
|
|
449
|
ImportResult result = ioService.importDataFromStream(configurator);
|
450
|
monitor.done();
|
451
|
|
452
|
display.asyncExec(new Runnable() {
|
453
|
|
454
|
@Override
|
455
|
public void run() {
|
456
|
CdmStore.getContextManager().notifyContextRefresh();
|
457
|
}
|
458
|
});
|
459
|
showResult("Abcd Import", display, result, importSuccessMessage);
|
460
|
return Status.OK_STATUS;
|
461
|
}
|
462
|
};
|
463
|
|
464
|
return job;
|
465
|
|
466
|
}
|
467
|
|
468
|
public Job createIOServiceJob(
|
469
|
final List<Abcd206ImportConfigurator> abcdConfigurators) {
|
470
|
Assert.isNotNull(abcdConfigurators, "Configuration may not be null");
|
471
|
final Display display = Display.getDefault();
|
472
|
Job job = new Job("Import: " + " Abcd") {
|
473
|
|
474
|
@Override
|
475
|
protected IStatus run(IProgressMonitor monitor) {
|
476
|
monitor.beginTask("Importing data", IProgressMonitor.UNKNOWN);
|
477
|
IIOService ioService = CdmApplicationState.getIOService();
|
478
|
|
479
|
ImportResult result = ioService.importDataFromStream(abcdConfigurators);
|
480
|
monitor.done();
|
481
|
|
482
|
display.asyncExec(new Runnable() {
|
483
|
|
484
|
@Override
|
485
|
public void run() {
|
486
|
CdmStore.getContextManager().notifyContextRefresh();
|
487
|
}
|
488
|
});
|
489
|
showResult("Abcd Import", display, result, importSuccessMessage);
|
490
|
EventUtility.postEvent(WorkbenchEventConstants.REFRESH_NAVIGATOR, true);
|
491
|
|
492
|
|
493
|
return Status.OK_STATUS;
|
494
|
}
|
495
|
};
|
496
|
|
497
|
return job;
|
498
|
}
|
499
|
|
500
|
public Job createIOServiceJob(final ImportConfiguratorBase configurator) {
|
501
|
Assert.isNotNull(configurator, "Configuration may not be null");
|
502
|
final Display display = Display.getDefault();
|
503
|
|
504
|
Job job = new Job("Update: " + configurator.getClass().getSimpleName()) {
|
505
|
|
506
|
@Override
|
507
|
protected IStatus run(IProgressMonitor monitor) {
|
508
|
monitor.beginTask("Updating data", IProgressMonitor.UNKNOWN);
|
509
|
IIOService ioService = CdmApplicationState.getIOService();
|
510
|
ImportResult importResult = null;
|
511
|
if (configurator instanceof ExcelDistributionUpdateConfigurator){
|
512
|
ExcelDistributionUpdateConfigurator config = (ExcelDistributionUpdateConfigurator) configurator;
|
513
|
importResult =ioService.updateDistributionData(config);
|
514
|
}
|
515
|
|
516
|
monitor.done();
|
517
|
// display.asyncExec(new Runnable() {
|
518
|
//
|
519
|
// @Override
|
520
|
// public void run() {
|
521
|
// CdmStore.getContextManager().notifyContextRefresh();
|
522
|
// }
|
523
|
// });
|
524
|
showResult(configurator.getClass().getSimpleName(), display, importResult, updateSuccessMessage);
|
525
|
|
526
|
|
527
|
return Status.OK_STATUS;
|
528
|
}
|
529
|
|
530
|
|
531
|
};
|
532
|
|
533
|
return job;
|
534
|
|
535
|
}
|
536
|
|
537
|
/**
|
538
|
* @return
|
539
|
*/
|
540
|
public ExcelDistributionUpdateConfigurator ExcelDistributionUpdateConfigurator() {
|
541
|
return (ExcelDistributionUpdateConfigurator) getConfigurator(TYPE.Excel_Distribution);
|
542
|
}
|
543
|
|
544
|
|
545
|
|
546
|
|
547
|
|
548
|
|
549
|
|
550
|
}
|