commit 02f4b5a988726312d5f7262c543f88b1fc2349b0
Author: Patrick Plitzner <p.plitzner@bgbm.org>
Date:   Thu Feb 21 12:19:05 2019 +0100

    Further update of getting-started documentation

diff --git a/src/site/apt/getting-started.apt b/src/site/apt/getting-started.apt
index b1b611b2a..67e374d80 100644
--- a/src/site/apt/getting-started.apt
+++ b/src/site/apt/getting-started.apt
@@ -1,61 +1,61 @@
-		------
-		Setting up a Taxonomic Editor development environment
-		------
-		n.hoffmann
-		------
-		
+        ------
+        Setting up a Taxonomic Editor development environment
+        ------
+        n.hoffmann
+        ------
+        
 
 Setting up a Taxonomic Editor development environment
 
-	This document describes all steps necessary to create a development environment to develop the EDIT Taxonomic Editor. If you are looking for 
-	instructions on how to install the EDIT Taxonomic Editor please consult the {{{./manual.html} manual}}.
-	
-	<Table of Contents>
-	
+    This document describes all steps necessary to create a development environment to develop the EDIT Taxonomic Editor. If you are looking for 
+    instructions on how to install the EDIT Taxonomic Editor please consult the {{{./manual.html} manual}}.
+    
+    <Table of Contents>
+    
 %{toc|section=0|fromDepth=2|toDepth=3}
-	
+    
 * Requirements
 
-	The current version of the EDIT Taxonomic Editor is developed using the Eclipse IDE for RCP developers.
-	
-	
+    The current version of the EDIT Taxonomic Editor is developed using the Eclipse IDE for RCP developers.
+    
+    
 * Checking out the sources
 
-	Use git to check out the sources from the EDIT repository to a location on your development machine.
-	
+    Use git to check out the sources from the EDIT repository to a location on your development machine.
+    
 ---
 $ git clone ssh://git@dev.e-taxonomy.eu/var/git/taxeditor.git
 ---
 
-	This will leave you with a directory <<<taxeditor/>>> containing everything that is needed. We will have a look at the contents later on.
+    This will leave you with a directory <<<taxeditor/>>> containing everything that is needed. We will have a look at the contents later on.
 
 * Setting up eclipse
 
-	* Start up eclipse and open a workspace. 
-	
-	* Open up the Import Wizard via <File -\> Import...> from the menu
-	
-	* Choose <Maven -\> Existing maven projects > and click next.
-	
-	* For setting the <Root Directory> browse to the <<<taxeditor/>>> directory. After confirming the directory selection dialog, the <Projects> list should contain a number of projects all starting with 
-	<<<eu.etaxonomy.taxeditor>>> which should be checked for import.
-	
-	* Click <Select All> to finish the wizard and import the projects into your workspace.
-	
-	You should now be able to see the taxeditor projects in your workspace.
-	
+    * Start up eclipse and open a workspace. 
+    
+    * Open up the Import Wizard via <File -\> Import...> from the menu
+    
+    * Choose <Maven -\> Existing maven projects > and click next.
+    
+    * For setting the <Root Directory> browse to the <<<taxeditor/>>> directory. After confirming the directory selection dialog, the <Projects> list should contain a number of projects all starting with 
+    <<<eu.etaxonomy.taxeditor>>> which should be checked for import.
+    
+    * Click <Select All> to finish the wizard and import the projects into your workspace.
+    
+    You should now be able to see the taxeditor projects in your workspace.
+    
 * Dependencies
-	
-	The Taxonomic Editor uses <maven 3> for convenient configuration and automation of common tasks, 
-	such as resolving dependencies and automating builds.
+    
+    The Taxonomic Editor uses <maven 3> for convenient configuration and automation of common tasks, 
+    such as resolving dependencies and automating builds.
 
-	We have two modules that use maven for dependency resolution: cdmlibrary and the molecular module.
-	
- 	The <<<latest snapshot branch>>> of the Taxonomic Editor is programmed against the latest
-	SNAPSHOT version of the cdmlibrary. Because that dependency will change quickly, we
-	do not include it with the other dependencies but rather install it with maven. 
+    We have two modules that use maven for dependency resolution: cdmlibrary and the molecular module.
+    
+    The <<<latest snapshot branch>>> of the Taxonomic Editor is programmed against the latest
+    SNAPSHOT version of the cdmlibrary. Because that dependency will change quickly, we
+    do not include it with the other dependencies but rather install it with maven. 
 
-	In order to do that you have to run <<<mvn install>>> and <<<mvn validate>>> in your <<<taxeditor>>> directory.
+    In order to do that you have to run <<<mvn install>>> and <<<mvn validate>>> in your <<<taxeditor>>> directory.
 
 ---
 $ cd taxeditor
@@ -63,99 +63,95 @@ $ mvn clean install
 $ mvn validate
 ---
 
-    The maven pom.xml provides a special profile which you may want to use if you are developing the cdmlib at the same time. This profile, named <<<local-repository>>>, causes maven to always use the local maven repository, so the latest changes to the cdmlib which have been installed locally by <<<mvn install>>>  will be used. In order to use this profile you would execute the validate gloal differently:
+    The maven pom.xml provides a special profile which you may want to use if you are developing the cdmlib at the same time. This profile, named <<<local-repository>>>, causes maven to always use the local maven repository, so the latest changes to the cdmlib will be used. You have to run <<<mvn install>>> in the cdmlib folder beforehand to install the local dependencies to the repository. In order to use this profile you would execute the <<<validate>>> gloal differently:
 
  ---
  $ mvn -P local-repository  -Dlocalrepo=/home/${youUserName}/.m2/repository validate
  ---
 
-	This will take some time, as maven will download the required dependencies.
-	
-	There is also a convenience shell script in <<<setup-project.sh>>> in the <<<taxeditor>>> directory
-	
+    This will take some time, as maven will download the required dependencies.
+    
+    There is also a convenience shell script <<<setup-project.sh>>> in the <<<taxeditor>>> directory which runs the above mentioned commands.
+    
  ---
  $ ./setup-project.sh
  ---
 
 
-	After maven has finished follow these steps:
+    After maven has finished follow these steps:
 
-	The UI is implemented using a fixed version of SWT. So please follow the steps to correctly set the  {{{https://dev.e-taxonomy.eu/redmine/projects/edit/wiki/TaxonomicEditorDevelopersGuide#Target-RCP-Environment}Target-RCP-Environment}}	
-	
-	To get rid of the errors, you have to update the classpaths of all plugin projects. To do this right-click any of the <taxeditor-*> projects and choose <PDE Tools -\> Update Classpath...>. Select All plugins except taxeditor.webapp  and confirm. After a rebuild of your entire workspace all errors should be gone and you are ready to go.
+    The UI is implemented using a fixed version of SWT. So please follow the steps to correctly set the  {{{https://dev.e-taxonomy.eu/redmine/projects/edit/wiki/TaxonomicEditorDevelopersGuide#Target-RCP-Environment}Target-RCP-Environment}} 
 
-	<<Note>>: If you have also checked out the cdmlib sources you may have to run <<<mvn install>>> on the cdmlib project beforehand to update the cdmlib jars in your local maven repository.
 
-
-	
+    
 * Bundle overview
 
-	Let's have a quick look at some important projects:
-	
+    Let's have a quick look at some important projects:
+    
 ** <eu.etaxonomy.taxeditor.store>
 
-	This package communicates with cdmlib-service directly, offering all services, basic operations on cdm data as well as import export functionality. Database and user management is also contained in this package.
-	
+    This package communicates with cdmlib-service directly, offering all services, basic operations on cdm data as well as import export functionality. Database and user management is also contained in this package.
+    
 ** <eu.etaxonomy.taxeditor.navigation>
 
-	The <Taxon Navigator> as well as the <Search> view are located in this plugin.
+    The <Taxon Navigator> as well as the <Search> view are located in this plugin.
 
 ** <eu.etaxonomy.taxeditor.editor>
 
-	Everything that has to do with editing taxa or specimens or data that is connected to those resides in this plugin. This includes the <Name Editor>, the <Specimen Editor>, the <Details View>,
-	the <Supplemental View>, the <Descriptive Data View> as well as the <Media View>. All interface elements that are used in the <taxeditor-bulkeditor> plugin are 
-	also located here.
+    Everything that has to do with editing taxa or specimens or data that is connected to those resides in this plugin. This includes the <Name Editor>, the <Specimen Editor>, the <Details View>,
+    the <Supplemental View>, the <Descriptive Data View> as well as the <Media View>. All interface elements that are used in the <taxeditor-bulkeditor> plugin are 
+    also located here.
 
 ** <eu.etaxonomy.taxeditor.bulkeditor>
 
-	The different bulkeditors are in this plugin.
+    The different bulkeditors are in this plugin.
 
 ** <eu.etaxonomy.taxeditor.molecular>
 
-	This plugin provides editors and views for working with phylogenetic data like single reads and consensus sequences. This includes the <Alignment Editor>, the <Pherogram View> and export functionality.
+    This plugin provides editors and views for working with phylogenetic data like single reads and consensus sequences. This includes the <Alignment Editor>, the <Pherogram View> and export functionality.
 
 ** <eu.etaxonomy.taxeditor.molecular.lib>
 
-	Manages the external dependencies for the molecular plugin.
+    Manages the external dependencies for the molecular plugin.
 
 ** <eu.etaxonomy.taxeditor.webapp>
-	
-	Provides all remoting facilities i.e. manages the internal CDM Server to connect to remote data sources.
+    
+    Provides all remoting facilities i.e. manages the internal CDM Server to connect to remote data sources.
 
 ** <eu.etaxonomy.taxeditor.printpublisher>
 
-	This plugin is a frontend and GUI for the <cdmlib-print> module. Please see the {{{http://cybertaxonomy.eu/printpublisher/}according documentation}} for further information.
+    This plugin is a frontend and GUI for the <cdmlib-print> module. Please see the {{{http://cybertaxonomy.eu/printpublisher/}according documentation}} for further information.
 
 ** <eu.etaxonomy.taxeditor.application>
 
-	This plugin bundles all the previous plugins into an application and configures the look and feel.
+    This plugin bundles all the previous plugins into an application and configures the look and feel.
 
 ** <eu.etaxonomy.taxeditor.cdmlib>
 
-	As said before, <cdmlib> dependecies reside in this plugin. Please also note that this plugin does not contain any sourcecode.
+    As said before, <cdmlib> dependecies reside in this plugin. Please also note that this plugin does not contain any sourcecode.
 
 ** <eu.etaxonomy.taxeditor.feature.platform>
 
-	A feature containing all dependencies for the eclipse platform.
+    A feature containing all dependencies for the eclipse platform.
 
 ** <eu.etaxonomy.taxeditor>
 
-	The product configuration for the standalone application.
+    The product configuration for the standalone application.
 
 ** <eu.etaxonomy.taxeditor.test>
-	
-	Automated GUI Tests for the Taxonomic Editor that can be run with {{{http://eclipse.org/swtbot/}SWTBot}}.
+    
+    Automated GUI Tests for the Taxonomic Editor that can be run with {{{http://eclipse.org/swtbot/}SWTBot}}.
 
 * Creating a launch configuration
 
-	To start the Taxonomic Editor from your newly created development environment you need to create a launch configuration.
-	
-	* Expand <eu.etaxonomy.taxeditor> and open <<<eu.etaxonomy.taxeditor.product>>>
-	
-	* In the <Testing> section (down left) click on <Launch an Eclipse application in Debug mode>
-	
-	The Taxonomic Editor should launch. Note: You might want to tweak the launch configuration, e.g. increase the memory.
-	
+    To start the Taxonomic Editor from your newly created development environment you need to create a launch configuration.
+    
+    * Expand <eu.etaxonomy.taxeditor> and open <<<eu.etaxonomy.taxeditor.product>>>
+    
+    * In the <Testing> section (down left) click on <Launch an Eclipse application in Debug mode>
+    
+    The Taxonomic Editor should launch. Note: You might want to tweak the launch configuration, e.g. increase the memory.
+    
 * Where do I go from here?
 
-	Please read the {{{http://dev.e-taxonomy.eu/trac/wiki/TaxonomicEditorDev}wiki}} for how-to's and code examples.
+    Please read the {{{http://dev.e-taxonomy.eu/trac/wiki/TaxonomicEditorDev}wiki}} for how-to's and code examples.
