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// $Id$
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/**
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* Copyright (C) 2016 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.taxeditor.molecular.io.wizard;
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import info.bioinfweb.commons.io.ContentExtensionFileFilter;
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import info.bioinfweb.commons.io.ContentExtensionFileFilter.TestStrategy;
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import info.bioinfweb.commons.io.ExtensionFileFilter;
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import info.bioinfweb.jphyloio.formatinfo.JPhyloIOFormatInfo;
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import java.io.File;
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import org.eclipse.core.databinding.DataBindingContext;
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import org.eclipse.core.databinding.validation.MultiValidator;
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import org.eclipse.core.databinding.validation.ValidationStatus;
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import org.eclipse.core.runtime.IStatus;
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import org.eclipse.jface.databinding.swt.ISWTObservableValue;
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import org.eclipse.jface.databinding.swt.SWTObservables;
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import org.eclipse.jface.databinding.wizard.WizardPageSupport;
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import org.eclipse.jface.wizard.WizardPage;
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import org.eclipse.swt.SWT;
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import org.eclipse.swt.events.SelectionAdapter;
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import org.eclipse.swt.events.SelectionEvent;
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import org.eclipse.swt.layout.FormAttachment;
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import org.eclipse.swt.layout.FormData;
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import org.eclipse.swt.layout.FormLayout;
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import org.eclipse.swt.widgets.Button;
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import org.eclipse.swt.widgets.Combo;
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import org.eclipse.swt.widgets.Composite;
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import org.eclipse.swt.widgets.FileDialog;
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import org.eclipse.swt.widgets.Label;
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import org.eclipse.swt.widgets.Text;
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/**
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* Wizard page that allows to specify which parts of a single read alignment shall be exported to an alignment file.
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*
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* @author Ben Stöver
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* @date 18.04.2016
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*/
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public class ExportSingleReadAlignmentWizardPage extends WizardPage {
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private Text consensusSequenceLabelTextField;
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private Button exportConsensusSequenceCB;
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private Button exportSingleReadsCB;
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private Text fileTextField;
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private Combo formatComboBox;
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/**
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* Create the wizard.
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*/
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public ExportSingleReadAlignmentWizardPage() {
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super("SingleReadSequencesExport"); //TODO Which pageName should be used here? Any conventions?
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setTitle("Sequence export"); //TODO multi language
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setDescription("Defines which sequences of the single read alignment shall be exported."); //TODO multi language
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}
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/**
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* Create contents of the wizard.
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*
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* @param parent the parent component
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*/
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@Override
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public void createControl(Composite parent) {
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DataBindingContext dbc = new DataBindingContext();
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WizardPageSupport.create(this, dbc);
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Composite container = new Composite(parent, SWT.NULL);
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setControl(container);
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container.setLayout(new FormLayout());
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exportSingleReadsCB = new Button(container, SWT.CHECK);
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FormData fd_exportSingleReadsCB = new FormData();
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fd_exportSingleReadsCB.left = new FormAttachment(0, 10);
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exportSingleReadsCB.setLayoutData(fd_exportSingleReadsCB);
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exportSingleReadsCB.setText("Export single reads");
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final ISWTObservableValue exportSingleReadsObservable = SWTObservables.observeSelection(exportSingleReadsCB);
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dbc.bindValue(exportSingleReadsObservable, getWizard().getModel().getExportSingleReadsObservable());
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exportSingleReadsCB.setSelection(false);
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exportSingleReadsCB.setSelection(true); // Must happen after the component has been bound to the model.
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exportConsensusSequenceCB = new Button(container, SWT.CHECK);
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exportConsensusSequenceCB.addSelectionListener(new SelectionAdapter() {
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@Override
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public void widgetSelected(SelectionEvent e) {
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consensusSequenceLabelTextField.setEnabled(exportConsensusSequenceCB.getSelection());
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}
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});
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FormData fd_exportConsensusSequenceCB = new FormData();
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fd_exportConsensusSequenceCB.top = new FormAttachment(exportSingleReadsCB, 6);
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fd_exportConsensusSequenceCB.left = new FormAttachment(0, 10);
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exportConsensusSequenceCB.setLayoutData(fd_exportConsensusSequenceCB);
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exportConsensusSequenceCB.setText("Export consensus sequence");
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final ISWTObservableValue exportConsensusSequenceObservable = SWTObservables.observeSelection(exportConsensusSequenceCB);
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dbc.bindValue(exportConsensusSequenceObservable, getWizard().getModel().getExportConsensusSequenceObservable());
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exportConsensusSequenceCB.setSelection(false);
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exportConsensusSequenceCB.setSelection(true); // Must happen after the component has been bound to the model.
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consensusSequenceLabelTextField = new Text(container, SWT.BORDER);
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FormData fd_consensusSequenceNameTextField = new FormData();
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fd_consensusSequenceNameTextField.bottom = new FormAttachment(exportConsensusSequenceCB, 32, SWT.BOTTOM);
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fd_consensusSequenceNameTextField.left = new FormAttachment(0, 32);
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fd_consensusSequenceNameTextField.right = new FormAttachment(100, -10);
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fd_consensusSequenceNameTextField.top = new FormAttachment(exportConsensusSequenceCB, 6);
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consensusSequenceLabelTextField.setLayoutData(fd_consensusSequenceNameTextField);
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final ISWTObservableValue consensusSequenceLabelObservable = SWTObservables.observeText(consensusSequenceLabelTextField, SWT.Modify);
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dbc.bindValue(consensusSequenceLabelObservable, getWizard().getModel().getConsensusSequenceLabelObservable());
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consensusSequenceLabelTextField.setText("ConsensusSequence"); // Must happen after the component has been bound to the model.
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Label lblFormat = new Label(container, SWT.NONE);
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FormData fd_lblFormat = new FormData();
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fd_lblFormat.top = new FormAttachment(consensusSequenceLabelTextField, 36);
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fd_lblFormat.left = new FormAttachment(exportSingleReadsCB, 0, SWT.LEFT);
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lblFormat.setLayoutData(fd_lblFormat);
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lblFormat.setText("Select the export format:"); //TODO multi language
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Label lblSelectTheData = new Label(container, SWT.NONE);
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fd_exportSingleReadsCB.top = new FormAttachment(lblSelectTheData, 6);
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FormData fd_lblSelectTheData = new FormData();
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fd_lblSelectTheData.left = new FormAttachment(0, 10);
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fd_lblSelectTheData.top = new FormAttachment(0, 10);
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lblSelectTheData.setLayoutData(fd_lblSelectTheData);
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lblSelectTheData.setText("Select the data to export:"); //TODO multi language
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Label lblSelectTheExport = new Label(container, SWT.NONE);
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FormData fd_lblSelectTheExport = new FormData();
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fd_lblSelectTheExport.top = new FormAttachment(lblFormat, 57);
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fd_lblSelectTheExport.left = new FormAttachment(exportSingleReadsCB, 0, SWT.LEFT);
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lblSelectTheExport.setLayoutData(fd_lblSelectTheExport);
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lblSelectTheExport.setText("Select the export destination:"); //TODO multi language
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Label lblAlignmentFile = new Label(container, SWT.NONE);
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FormData fd_lblAlignmentFile = new FormData();
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fd_lblAlignmentFile.top = new FormAttachment(lblSelectTheExport, 9);
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fd_lblAlignmentFile.left = new FormAttachment(exportSingleReadsCB, 0, SWT.LEFT);
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lblAlignmentFile.setLayoutData(fd_lblAlignmentFile);
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lblAlignmentFile.setText("Alignment file:"); //TODO multi language
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fileTextField = new Text(container, SWT.BORDER);
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FormData fd_text = new FormData();
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fd_text.right = new FormAttachment(100, -10);
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fd_text.left = new FormAttachment(lblAlignmentFile, 6);
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fd_text.top = new FormAttachment(lblSelectTheExport, 6);
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fileTextField.setLayoutData(fd_text);
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final ISWTObservableValue fileNameObservable = SWTObservables.observeText(fileTextField, SWT.Modify);
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dbc.bindValue(fileNameObservable, getWizard().getModel().getFileNameObservable());
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Button btnBrowse = new Button(container, SWT.NONE);
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btnBrowse.addSelectionListener(new SelectionAdapter() {
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@Override
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public void widgetSelected(SelectionEvent e) {
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FileDialog dialog = new FileDialog(getShell(), SWT.OPEN);
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dialog.setText("Export to"); //TODO multi language
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ContentExtensionFileFilter filter = getSelectedFormat().createFileFilter(TestStrategy.EXTENSION);
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dialog.setFilterExtensions(new String[]{filter.getExtensionsAsString()});
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dialog.setFilterNames(new String[]{filter.getDescription()});
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String selectedFile = dialog.open();
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if (selectedFile != null) { // Otherwise selecting was canceled.
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fileTextField.setText(selectedFile);
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}
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}
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});
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FormData fd_btnBrowse = new FormData();
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fd_btnBrowse.left = new FormAttachment(100, -128);
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fd_btnBrowse.bottom = new FormAttachment(fileTextField, 43, SWT.BOTTOM);
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fd_btnBrowse.top = new FormAttachment(fileTextField, 13);
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fd_btnBrowse.right = new FormAttachment(100, -10);
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btnBrowse.setLayoutData(fd_btnBrowse);
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btnBrowse.setText("Browse...");
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formatComboBox = new Combo(container, SWT.READ_ONLY);
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for (JPhyloIOFormatInfo formatInfo : ExportSingleReadAlignmentWizardModel.FORMAT_NAMES_TO_INFO_MAP.values()) {
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formatComboBox.add(formatInfo.getFormatName());
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}
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FormData fd_formatComboBox = new FormData();
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fd_formatComboBox.left = new FormAttachment(0, 10);
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fd_formatComboBox.right = new FormAttachment(100, -10);
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fd_formatComboBox.top = new FormAttachment(lblFormat, 6);
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formatComboBox.setLayoutData(fd_formatComboBox);
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final ISWTObservableValue formatObservable = SWTObservables.observeSelection(formatComboBox); // ViewerProperties.singleSelection().observe(formatComboBox); falls ein ComboViewer verwendet wird. (Dann kann direkt FormatInfo verwendet werden.)
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dbc.bindValue(formatObservable, getWizard().getModel().getFormatInfoObservable());
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formatComboBox.select(0); // Must happen after the component has been bound to the model.
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Button appendExtensionButton = new Button(container, SWT.NONE);
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appendExtensionButton.addSelectionListener(new SelectionAdapter() {
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@Override
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public void widgetSelected(SelectionEvent e) {
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fileTextField.setText(fileTextField.getText() + ExtensionFileFilter.EXTENSION_SEPARATOR +
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getSelectedFormat().createFileFilter(TestStrategy.EXTENSION).getDefaultExtension());
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}
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});
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FormData fd_btnNewButton = new FormData();
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fd_btnNewButton.left = new FormAttachment(btnBrowse, -217, SWT.LEFT);
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fd_btnNewButton.right = new FormAttachment(btnBrowse, -6);
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fd_btnNewButton.bottom = new FormAttachment(fileTextField, 43, SWT.BOTTOM);
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fd_btnNewButton.top = new FormAttachment(fileTextField, 13);
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appendExtensionButton.setLayoutData(fd_btnNewButton);
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appendExtensionButton.setText("Append default extension"); //TODO multi language
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dbc.addValidationStatusProvider(new MultiValidator() {
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@Override
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protected IStatus validate() {
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String label = (String)consensusSequenceLabelObservable.getValue();
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boolean exportConsensus = (Boolean)exportConsensusSequenceObservable.getValue();
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boolean exportReads = (Boolean)exportSingleReadsObservable.getValue();
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if (!exportConsensus && !exportReads) {
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return ValidationStatus.error("Either single reads or the consensus sequence have to be selected for export."); //TODO multi language
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}
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else if (exportConsensus && ((label == null) || label.isEmpty())) {
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return ValidationStatus.error("The consensus sequence label must not be empty."); //TODO multi language
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}
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String fileName = (String)fileNameObservable.getValue();
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if ((fileName == null) || fileName.isEmpty()) {
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return ValidationStatus.error("The file name must not be empty."); //TODO multi language
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}
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else if (!getSelectedFormat().createFileFilter(TestStrategy.EXTENSION).accept(new File(fileName))) {
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return ValidationStatus.warning("The file name does have a valid extension for the selected format."); //TODO multi language
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}
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else if (fileName.charAt(0) == ExtensionFileFilter.EXTENSION_SEPARATOR) {
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return ValidationStatus.warning("File starting with '" + ExtensionFileFilter.EXTENSION_SEPARATOR +
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"' are not supported on all operating systems."); //TODO multi language
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}
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else {
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return ValidationStatus.ok();
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}
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}
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});
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}
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private JPhyloIOFormatInfo getSelectedFormat() {
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return ExportSingleReadAlignmentWizardModel.FORMAT_NAMES_TO_INFO_MAP.get(formatComboBox.getText());
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}
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/**
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* {@inheritDoc}
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*/
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@Override
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public ExportSingleReadAlignmentWizard getWizard() {
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return (ExportSingleReadAlignmentWizard)super.getWizard(); // Would throw an exception, if this page is used within another wizard.
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}
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}
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