Missing dependency Apache commons.lang added to molecular.lib. Single read alignment export feature now makes use of wizard. (Selecting which sequences to export is not yet supported.)
New JPhyloIO package now exported by molecular.lib. SingleReadAlignmentPredicates renamed to SingleReadAlignmentRDFXMLConstants. Pherogram alignment shifts are now written to single read export unsing a custom ObjectTranslator implementation.
ExportSingleReadAlignmentWizardPage now allows to select output file and format.
CDMSequenceMatrixAdapter now exports sequence metadata.
Bug fix: CDMSequenceMatrixAdapter now does not create CharacterSetIntervalEvents if the alignment has no columns.
Merge branch 'LibrAlign' of ssh://dev.e-taxonomy.eu/var/git/taxeditor into LibrAlign
Merge branch 'LibrAlign' of https://dev.e-taxonomy.eu/git/taxeditor into LibrAlign
Merge branch 'develop' into LibrAlign
Add spring oauth2 dependency
ref #6163: in occurence bulk editor it is possible to add media
ref #5972: the wizard warns the user if the reference is used ssomewhere else
fix #3573 Add non-generic configurator page to ABCD import wizard
#ref #5496 Do not show any terms for preservation method and stage preferences
ref #6159: minor
ref #6159: fix that some column show no data
Fix potential NPE
Plugin molecular.lib refactored to use direct project dependencies. This should not be merged into trunk, since this is only for development state. (Currently the trunk is anyway already using different Maven dependencies.) Adjustments to recent changes in JPhyloIO.
ref #6058 store named area filters more individually
Removed p6spy from classpath
minor changes for name details view configuration
add the nameDetails configuration
minor
fix #6050: add the possibility to configure which fields should be displayed in name details view
fix test
ref #6050: test git/redmine and add the pref keys for configurable details view
fix #6129: remove additional authorstring in selection dialog search field
fix #5891: save null instead of empty string for text fields
smaller changes for specimen import and others
minor changes in excel import wizard
delete transient services
remove experimental code
fix #5692: adapt delete algorithm to annotatedLineEditor mechanisms
removing p6spy dependencies
removing generated file
Revert "ref #6118 catching exception during checkConnection"
This reverts commit bb7b4f601b49f1ba29f149405246f120b4c46a9a.
ref #6124 fixing Bundle-Version
OOPS!
fixing project version in pom.xml which was not updated after the relase
ref #6118 catching exception during checkConnection
fix #5888: add the element as argument to postExecute method s
fix transient services
fix #6120 Cleanup uuidAndTitleCache methods
ref #6047: add the adapted files
fix #6047: add the possibility to the termComboElement that the idInVoc is used as label
ref #5969: add remark that the nomenclatural code preference is stored in db
ref #5969: check for db connection before ty to read the preferred nomenclatural code
ref #3573 Add streamlined ABCD import configurator page
Fix label for term vocabularies in term editor
Trim code
Merge branch 'release/4.3.0' into develop
Updated version in pom / project files to taxeditor version : 4.4.0-SNAPSHOT and cdmlib version : 4.4.0-SNAPSHOT
Updated version in pom / project files to taxeditor version : 4.3.0 and cdmlib version : 4.3.0
fix transient service
also add null check in comparator of nomenclaturalReferenceSelectionDialog
fix #6061: add a null check for abbrevTitleCache and titleCache in comparator
ref #5616 Generalize evaluation of available CdmViewers
Compare taxon editor input based on taxon instead of taxon node (Revert 93c6e0a894d2e4b0c9df6c7c3feff2f20e0b9e38)
fix #6101: add a check for multilanguage preference
ref #5616 Fix class check for bulk editor porperty tester
ref #6082 try to fix dependency issues in managed TaxEditor
fix #6082 fixing incomplete entries in the eu.etaxonomy.taxeditor.webapp/build.properties
i18n for view titles
Generalize title creation for cdm view parts
Compare taxon editor input based on taxon node instead of taxon
fix #5607: add sec reference to property path solves the problem of not reload the right sec reference
remove System.out.println...
fix #6056: when creating checklisteditorInput don't init session at the beginning, but at the end of constructor
fix transientServices (2)
fix transientService
ref #6089 Fix not compiling operation
ref #6089 Fix failing test and transient service after taxonomicChildrenCount and taxonomicParentCache removal
Rename Checklist-Editor -> Distribution-Editor
fix #5702: filter for current name in name details view if select new name
ref #5837: if nomenclatural titleCache and titleCache are equal only one is shown in selection dialog
ref 6061: using * at the beginning of search pattern triggers a search on abbrevTitleCache and titleCache
ref #5969: check if there is a NC preference in db if not use the local NC preference
fix #5874: display of infrageneric epithet are different for zoological and botanical names
ref #6061: remove the current selection as filter in nomenclatural author selection dialog
ref #6041: revert the changes and wait for the decision of the user meeting
Minor language correction
fix #6084: check if areas are selected in preferences before open the distribution editor
fix #6062 Add property tester for "Open in..." bulk editor menu items
Organize imports
fix #5874: infrageneric epithet is visible only for species not for infraspecific names
ref #5616 Fix NPE for opening synonyms from SearchResult view
fix #5616 Add check for orphaned taxa to CdmViewer context menu
fix #5927: deletion of default language is possible if more than one representation is available
ref #5969: get the preference NC from db when initialize preference store and save the changes in db
fix #6059 Save expand state for details view, supplemental view including sub sections
ref #6059 Save expand state for supplemental data view
Do not show taxon-specific deletion options when deleting classifications