Project

General

Profile

Statistics
| Branch: | Tag: | Revision:

taxeditor @ 6ed48b2e

# Date Author Comment
6ed48b2e 01/18/2017 04:23 PM Patrick Plitzner

ref #6283 Fixed potential NPE for EntitySelectionElement

  • refactored constructors to always initialise the clazz variable
9a3af936 01/18/2017 02:49 PM Patrick Plitzner

fix #5496 Refactor preference pages to use TermType

d89cdff1 01/18/2017 09:28 AM Patrick Plitzner

ref #6333 Remove framework for exchanging an element in the details view

  • This is against the concept of the DetailsView just showing an element which you can edit. Changing the element requires the DetailsView to know where the element comes from
f5b66699 01/18/2017 09:16 AM Patrick Plitzner

ref #6333 Add generic support for entity collection sections to allow
adding existing entities

  • this is done by two abstract methods allowAddExisting() and addExisting()
a66eea38 01/17/2017 11:42 PM Andreas Müller

ref #6307 remove cdmserver/ from contextpath

01840d49 01/17/2017 11:29 PM Andreas Müller

ref #5922 Change order in supplemental data view (cont.)

9d28ffb6 01/17/2017 11:57 AM Katja Luther

minor

1f9fcd90 01/17/2017 11:56 AM Katja Luther

fix #6334: unsaved description needs to be removed from the taxon

40de894f 01/17/2017 11:52 AM Katja Luther

add missing changes

5291be06 01/17/2017 11:46 AM Katja Luther

minor

d747b2b9 01/17/2017 11:00 AM Katja Luther

fix #5365: add delete configuration to media view

fff59041 01/13/2017 04:35 PM Patrick Plitzner

remove unused bin.include

645c77a1 01/13/2017 04:02 PM Patrick Plitzner

Saving files before refreshing line endings

1c69b0d0 01/13/2017 03:33 PM Patrick Plitzner

Merge branch 'develop' into LibrAlign

64f25b56 01/13/2017 03:11 PM Ben Stöver

Alternative versions for build.properties added. Current state set to "dependencies from JARs". (Can be merged to trunk in this state.)

6de63659 01/13/2017 01:51 PM Patrick Plitzner

ref #5495 always empty details view when there is no active editor
providing a selection

e54b6c76 01/13/2017 01:33 PM Ben Stöver

pom.xml and MANIFEST.MF updated in molecular.lib.

ef1673ea 01/13/2017 12:08 PM Ben Stöver

Adjustments to project structure changes in JPhyloIO.

a2cfd9b1 01/13/2017 09:25 AM Patrick Plitzner

ref #6158 Add missing git clone command to doc

8e2a3b63 01/13/2017 09:21 AM Patrick Plitzner

fix #6158 updated taxeditor installation documentation

55409937 01/12/2017 11:57 PM Andreas Müller

fix #5922 Move extensions section down

79be504a 01/12/2017 11:56 PM Andreas Müller

cleanup

c1c83a38 01/12/2017 04:50 PM Katja Luther

fix #5671: add filter element for selection dialog

a5a9fcde 01/10/2017 04:45 PM Patrick Plitzner

ref #6320 show pherogram title cache in single read label

799a6449 01/10/2017 04:25 PM Patrick Plitzner

Fix icon for media derivative

5b6653af 01/10/2017 03:06 PM Patrick Plitzner

fix #6307 Show contextPath in error log

4abd9b52 01/10/2017 03:06 PM Patrick Plitzner

Removed unused import

40bd7837 01/10/2017 01:57 PM Katja Luther

fix #4246: move insert node and create new key node to one menu item with submenu

1738ed58 01/06/2017 04:40 PM Patrick Plitzner

fix #5488 show only zoological nomenclatural status types not for
botanical names

  • also dis some refactoring
2443669b 01/06/2017 03:49 PM Patrick Plitzner

fix #5495 DetailsView is emptied when upon context stop i.e. when the
connection is shut down

0c7c9656 01/06/2017 02:36 PM Patrick Plitzner

fix #5714 Add possibility for adding a comparator to EnumComboElement

  • for Sources always have PrimaryTaxonomicSource or PrimaryMediaSource on top depending on IdentifiableSource
60e722d0 01/06/2017 11:08 AM Patrick Plitzner

fix #5474 moved Feature and NamedArea to top level

  • remaining terms are under "Other..."
4f22ac1d 01/06/2017 08:56 AM Patrick Plitzner

fix #5698 Duplicate ampersand to avoid conversion to mnemonic

ac2d218a 01/06/2017 08:39 AM Patrick Plitzner

fix #5922 Move credits and rights section to the bottom

9e550198 01/04/2017 03:08 PM Katja Luther

fix #4821: create OrderedTermvoc for OrderedTerms

cba60f25 12/22/2016 11:09 AM Patrick Plitzner

Fix possible NPE

ebc31cb0 12/20/2016 02:28 PM Andreas Kohlbecker

ref #6190 removing svn property place holder in first line of code - java files

e3240965 12/20/2016 02:22 PM Andreas Kohlbecker

ref #6190 removing svn property place holder in first line of code - java files

23925b61 12/20/2016 01:03 PM Katja Luther

missing changes

ab553c7a 12/20/2016 12:54 PM Katja Luther

minor

6c704323 12/20/2016 12:50 PM Katja Luther

minor to fix failing jenkins

fa39cfe4 12/19/2016 04:16 PM Katja Luther

more changes for configurable name details view

d37de08a 12/19/2016 04:14 PM Katja Luther

adaptions for polytomous key editing to avoid null values in children list

05030527 12/19/2016 04:04 PM Katja Luther

ref #6105: add name details view configuration to the cdm preferences view

5c9c924c 12/19/2016 03:58 PM Katja Luther

deduplicate the nomenclatural code preference page in preferences menu

2c4452d9 12/08/2016 11:57 AM Katja Luther

ref #4766: remove apply and restore defaults buttons

1183a87f 12/08/2016 11:31 AM Katja Luther

ref #4766: sortindex updater integration in admin menu

cf36df3f 12/07/2016 01:26 PM jenkins

Merge branch 'hotfix/4.4.1' into develop

13834394 12/06/2016 03:40 PM jenkins

Updated version in pom / project files to taxeditor version : 4.4.1 and cdmlib version : 4.4.1

47596c87 12/05/2016 04:19 PM jenkins

Merge branch 'release/4.4.0' into develop

d2f3794a 12/05/2016 04:19 PM jenkins

Merge branch 'release/4.4.0'

a25a0a15 12/05/2016 03:50 PM jenkins

Updated version in pom / project files to taxeditor version : 4.5.0-SNAPSHOT and cdmlib version : 4.5.0-SNAPSHOT

2b99aa56 12/05/2016 03:50 PM jenkins

Updated version in pom / project files to taxeditor version : 4.4.0 and cdmlib version : 4.4.0

d57cedd1 12/05/2016 10:42 AM Katja Luther

fix #6218: avoid NPE when remove text from label field

5de23116 12/01/2016 04:02 PM Andreas Müller

fix #5971 fix NPE for not existing preference

5e027f1f 12/01/2016 03:46 PM Andreas Müller

cleanup

26cb69af 12/01/2016 03:38 PM Patrick Plitzner

ref #6199 Move "open in editor" option to the bottom

d6c025ed 12/01/2016 11:55 AM Katja Luther

add missing files

d70c528d 12/01/2016 09:14 AM Katja Luther

avoid NPE when reusing taxonname for taxon creation

a6de10b5 11/25/2016 12:59 PM Katja Luther

ref #6219: add warning that synonym is deleted immediately

ab94d85b 11/24/2016 02:50 PM Patrick Plitzner

l10n for PresenceAbsenceTermDetailElement

cb1498ea 11/24/2016 02:27 PM Patrick Plitzner

ref #6216 Added button to select color instead of clicking on color
field

  • resized color field
3dbe4420 11/24/2016 02:27 PM Patrick Plitzner

Align label to the middle

f81dda1f 11/24/2016 01:41 PM Katja Luther

fix #4945: add propertytester for polytomouskeynode to enable menu items only if node is selected

bb920fa1 11/24/2016 01:39 PM Katja Luther

fix #5971: move admin menu in front of Help

0908acf3 11/24/2016 12:18 PM Andreas Müller

Adapt labels for taxon node agent relation editing

15f5a1bd 11/24/2016 10:25 AM Patrick Plitzner

ref #6216 Pre-select color in ColorDialog

cf4bd11f 11/24/2016 10:22 AM Patrick Plitzner

fix #6216 Implement color dialog to change color of presence absence
terms

033aad78 11/24/2016 09:52 AM Katja Luther

all polytomouskey related handler are now extended from RemotingCdmHandler

efd30f4b 11/23/2016 03:04 PM Katja Luther

fix #5841: set selection to newly created keynode

84ab8cb0 11/23/2016 02:54 PM Katja Luther

fix #6215: check for datasource when opening preferencepage

0bd095d9 11/23/2016 10:22 AM Katja Luther

fix #5971: admin menu is visible only if connected and user has role manager

af45abb8 11/21/2016 03:56 PM Katja Luther

fix #6209: adapt the message if a datasource is not available

80e535dd 11/19/2016 01:29 PM Ben Stöver

Additional strings externalized in molecular plugin.
Wizard for exporting single read alignments now warns and prompts if files are overwritten.
Bug fix: Changes in the format selection in the wizard now trigger validation again.
ExportSingleReadAlignmentWizardModel uses format list instead of map again.

e9773ade 11/18/2016 06:25 PM Katja Luther

ref #5971: new main menu admin with cdm preference nomenclatural code and insert polytomous key node

ecd0d355 11/18/2016 05:01 PM Ben Stöver

Messages edited.
Support for parameters to export only single reads or only consensus implemented.
JavaDoc extended.

a862b815 11/18/2016 03:45 PM Ben Stöver

Missing files from last commit added.

00d1a6ce 11/18/2016 03:43 PM Ben Stöver

Export single read alignment wizard separated into two pages.
Option to elongate sequences added.
Application information parameters of JPhyloIO set.

7417db95 11/17/2016 07:17 PM Ben Stöver

Exported single read sequences are now filled up with gaps. (Will be dependent on a parameter in the future.)
Texts in ExportSequenceToFileHandler extzernalized and translated.

d0c85dbc 11/17/2016 05:22 PM Ben Stöver

Strings in ExportSingleReadAlignmentWizardPage externalized and translated.

02e8904c 11/17/2016 01:40 PM Ben Stöver

Fixes in ExportSingleReadAlignmentWizardPage layout.
Default values added to ExportSingleReadAlignmentWizardModel.
Updating values after model binding in ExportSingleReadAlignmentWizardPage implemented.

6ecec98b 11/17/2016 10:09 AM Patrick Plitzner

ref #6198 removed synonym type combobox

c9d05940 11/17/2016 10:06 AM Patrick Plitzner

ref #6198 Correctly initialise ui field for pro parte and partial

4f57e9bf 11/17/2016 10:05 AM Patrick Plitzner

ref #6205 Move excluded notes to the bottom of the wizard

7ffbdbb1 11/16/2016 11:18 PM Ben Stöver

Export single read alignment wizard validation refactored and extended.
Some German translations in molecular plug-in added.

661914be 11/16/2016 09:25 PM Ben Stöver

Intermediate commit in implementing wizard validation (before moving to MultiValidator).
Plug-in dependencies added to molecular.

ac1659d4 11/15/2016 05:27 PM Patrick Plitzner

fix #6199 Excluded note for excluded taxon nodes in TaxEditor

924ba372 11/15/2016 05:09 PM Ben Stöver

ExportSingleReadAlignmentWizard now exposes whole format info object.
FileDialog added to ExportSingleReadAlignmentWizardPage.

94e60697 11/15/2016 03:11 PM Patrick Plitzner

Clean up Derivate perspective

  • Remove Derivate view as it is not a view but an editor (they have their own designated area)
48005c5f 11/15/2016 03:10 PM Patrick Plitzner

Fix potential NPE

69410b96 11/15/2016 10:50 AM Patrick Plitzner

fix #6198 Remove synonymrelationships in TaxEditor

3e194787 11/15/2016 10:12 AM Patrick Plitzner

fix #6197 Move excluded and unplaced from Taxon to TaxonNode in
TaxEditor

fdefb4bc 11/15/2016 09:47 AM Patrick Plitzner

Fix possible widget is disposed exception

e701bdea 11/15/2016 09:35 AM Patrick Plitzner

Fix potential NPE

bcb823d5 11/14/2016 07:34 PM Ben Stöver

Missing dependency Apache commons.lang added to molecular.lib.
Single read alignment export feature now makes use of wizard. (Selecting which sequences to export is not yet supported.)

9a9359ce 11/14/2016 05:34 PM Ben Stöver

New JPhyloIO package now exported by molecular.lib.
SingleReadAlignmentPredicates renamed to SingleReadAlignmentRDFXMLConstants.
Pherogram alignment shifts are now written to single read export unsing a custom ObjectTranslator implementation.

fc53d911 11/14/2016 04:12 PM Andreas Müller

cleanup

0d726c87 11/14/2016 04:12 PM Andreas Müller

Move MoveTaxonOperationTest to navigation package and try to enable

e042ef3a 11/14/2016 02:38 PM Andreas Müller

ref #5875 fix testdata in TaxEditor

b3570263 11/14/2016 02:27 PM Andreas Müller

ref #5875 fix testdata in TaxEditor

Add picture from clipboard (Maximum size: 40 MB)