EDIT

isRemoting is no longer based on a bean in the application context, but
the type of cdm source

isRemoting is no longer based on a bean in the application context, but
the type of cdm source

cdm.datasources.xml : added test sources settings file
CdmRemoteSourceTest, RemoteLazyLoadingTest : updated tests
HttpInvokerServicesTest, CdmPersistentRemoteSourceTest, CdmApplicationRemoteControllerTest : new test classes for remoting
RemoteApplicationConfigurationTest : no longer a real test, but a super class for remote tests

• fixed link to online svn repo

• added memento restore mechanism to DerivateView (partially)

• set default derivate typ filter to "unknown"

• javadoc

• refresh view instead of setting the editor input

• cleaned DerivateView context menu code and classes

• partially added handling of input fields

added new remote package

comments and javadoc

removed repeated call to get all cdm sources

updating to align with refactored cdm source classes / interfaces

Adding CDM Remote Source set of classes to allow editor to connect to a remote cdmserver

CdmApplicationRemoteConfiguration : removed spring bean name hack, since we now have a new controller
CdmApplicationRemoteController : new Controller class to handle remoting
AbstractLazyInitializer / AbstractPersistentCollection : added missing methods to check if proxy object is initialized...

• refactored context menu for DerivateView to be programmatic instead of declarative (using plugin.xml)
  • fixed icon bug for DerivateSearchView

• only show Copy/Paste context menu for SingleRead/Sequence

• added update() method to DerivateView
  • display different icon for SingleReads linked to multiple Sequences

• added util method to get the TreeNode out of a selection

• added Copy/Paste for SingleRead->Sequence to DerivateView
  • copying actually just creates a link

• fixed user message

• added gel photo detail element to Amplification wizard

• removed Amplification as a TreeNode from the DerivateView
  • added Amplification to DetailsView of SingleRead as an EntitySelectionElement

• fixed javadoc

• organize imports for new molecular services

• fix cdmlib version number in .classpath (why does maven not generate this anymore?)
  • added "molecular" package to exported packages
  • organize imports for new molecular services

• used "move derivate" methods of service layer
  • added java doc

Updated version in config files to 3.3.2-SNAPSHOT

Updated version in config files to 3.3.1

• moved move-logic to occurrence service layer

• reset input fields of DerivateSearchView when context stops

• added drag'n'drop support for Sequences
  • added context listener to DerivateSearchView
  • refactored MVC pattern of DerivateSearchView

• added support for SingleRead drag'n'drop

• implemented drag'n'drop support for SpecimenOrObservationBase in Derivate View

• minor

• minor enhancement

• added timeout to internet availability check

• fixed ClassCastException for FeatureNodeContainers

• added basic drag'n'drop support to DerivateView

added more tests for both lazy loading entities and collections

adding missing methods

#4114 sort order in taxon navigator

• fixed class cast exception resulting from TreeNodes of DerivateView

• added context menu for TissueSample in DerivateView

while fixing a bug, revert the setting of the comparator.

taxeditor part of fix for #4121 (Changing password does not work)

avoiding problems which where due to a fix for ticket #3822

with the fixed compareTo method the TaxonNodeComparator should work (#4114)

• added isEnabled() method to IEnableableFormElement

• added missing interface method

• removed StoreUtil.getCdmEntity() invocation (#4091)

• fixed context menu options

• implemented EntitySelectionElement for Primer
  • adapted details views with primer selection element

• added missing interface method

implementing #4120: User always needs to have the right to change password and hiding all user related menu contributions if no user is logged in

Revert "#4114 sort order in taxon navigator " to avoid blocking bug

This reverts commit 1ef7ab55c5d437aba039bc10ee8d81e12f402309.

adding missing manifest file

setting application configuration and boolean remoting flag (bean) in hibernate proxy classes to differentiate local and remoting

after review final modification for #4115 ('editor' users cannot create new references via the reference select list)

implementing #4123 (add idInVocabulary to term labels in editor)

removing unavailable extension eu.etaxonomy.cdm.remote.controller.csv

added remote collection method checks in addition to local for lists and sets

#4114 sort order in taxon navigator

catching PermissionDeniedExceptions when only doing a check, so these exceptions no longer pollute the log

avoiding NPE

added test class for persistent collections and also a base class for configuringsetting up remote configuration.

added call to remoting with correct check

fixing #4115 ('editor' users cannot create new references via the reference select list)

fixing #4116 (ClassCastException when selecting Euro+Med top level area in DistributionElement details view)

fixing problem of publish checkbox disabled state being overwritten

• refactored selection of DerivateView to be TreeNode
  • adapted selection handling
  • restructured derivate hierarchy
  • Amplifications are now a direct child of Sequences
  • the can only be created when having a SingleRead
  • this representation does not affect the cdm structure

• fixed refresh problem

• clean code

fixing: #4110 (imlement nicer warning dialogue in Taxon Editor for permission denied exception)

more details in exception message of StoreUtil.getCdmEntity()

dnd support in taxon navigator for Taxonnodes protected regarding user permissions - #4055 (action enablement adapts to the users granted authorities)

avoiding NPE and other exceptions

updating project url in pom.xml

no longer using a conversation for the login dialog and thus fixing problems after putting wrong credentials

fixing setEnabled method

• removed dummy data from SpecimenImport

• fixed event handling by creating and linking the missing elements

• added missing DNA Quality section

• adpated DNA DetailsViews according to current development

• renamed getBaseUnit() to baseUnit()

• added transparency to icons

• added util method to get for getting a CDM entity (used in authenication/permission framework)
  • made use of this method where the type of the parameter was too general (like object)
  • made getBaseUnit() of DerivedUnitFacade public

• added icons for Amplification, Sequence and SingleRead

• added code to show icon for Amplification, Sequence and SingleRead (image files still missing)
  • removed text fields for media file in dna DetailsViews
  • added contig file in Sequence DetailsView

• added cascading save to pherogram (Media) of SingleRead
  • added media section to DetailsViews for Amplification (gel photo) and SingelRead (pherogram)

fixing missing text of Group members (User) in details section

fix problem with changeSynonymToAcceptedTaxon of a synonym being part of an homotypical group

protecting editing capabilities of names references and authors - #4055 (action enablement adapts to the users granted authorities)

• added multi-select(multi-save) to SpecimenImportEditor

fix: adding missing case statements

disabling edit button if user is allowed to UPDATE & making text elements selectable

implementing the CommandHandlerButton and using it as button to open the OpenFeatureTreeEditorWizard - #4055 (action enablement adapts to the users granted authorities)

• moved transient interfaces to taxeditor.editor
  • changed GUI control of DataImportEditor to be a TableViewer
  • made DataImportEditor generic

minor