EDIT

merged trunk into branch

• added special case handling for DerivateEditor so that the DetailsView only show data of the DerivedUnit and the FieldUnit #4474

• renamed interface IDerivedUnitFacadeEditor to IDerivedUnitFacadePart
  • show field unit data in NewDerivedUnitBaseWizard

• added interface IDerivedUnitFacadeEditor to tag editors that are working with DerivedUnitFacades (e.g. BulkEditor)
  • show field unit data for DerivedUnit when selected in BulkEditor

• added preference for displaying associated taxa in specimen details view

• added section for associated taxa (IndividualsAssocation, TypeDesignation) to DetailsView for specimen

• added amplification description to single read label in hierarchy
  • added marker to update method of amplification description

• layout enhancement

• added barcode to MediaSpecimen label

• moved extension point for taxon navigator context menu
  • fixed DerivateSearchView layout
  • added "disabled" extension point for toggling individual assciations in factual data view

• added clear button to DerivateSearchView
  • made use of cdmlib service to get associated specimen for one taxon (#4506)

changed classpath to 3.5.0

• added context menu entry to taxon navigator to open associated derivates in DerivateEditor
  • added taxon filter to DerivateSearchView (non-functional) (#4506)

latest changes from trunk

• removed unused code

• added static method to DerivateLabelProvider to get the derivate text
  • refactored moving of derivates to use the operation framework.
  • immplemented undo/redo

• Rights section is now part of MediaSpecimen DetailsView (fixes #4472)
  • DerivedUnits DetailsView only shows FieldUnit data in titleCache (fixes #4474)

• extended DerivateSearchView to allow multiple selection
  • added context menu to open multiple elements in DerivateView
  • extended DerivateView to show multiple derivate hierarchies in one view

• moved OriginalLabelData section to 2nd position
  • made text field fill horizontally

• fixed possible NPE

• fixed possible SessionException

• generalized sample designation GUI elements
  • added sample designation to TissueSample details view
  • added some more parameters to TissueSample details view

• extended DnaQuality details view
  • refactored DateElement creation

• added more paramaters to DnaQuality details view
  • fixed ordering of sample designations for DnaSamples (first is current)

• refresh after updating datasource (fixes #2117)

• added sampleDesignation section to DnaSample details view (#4237)
  • added sampleDesignation to DerivateLabelProvider

merge-update from trunk

• rename IDirtyMarkableSelectionProvider to IDirtyMarkable
  • extended interface IDirtyMarkable #2645
  • added method forceDirty()

merge-update from trunk

• removed workbenchShutdown actions because the editor cannot be closed if they fail

merge-update from trunk

• avoid possible NPE

• removed duplicate class variable

merge-update from trunk

• fixed possible LazyInitializaitionException in DerivateLabelProvdider

merge-update from trunk

• added filter button to setEnabled()

• fixed possible ClassCastException

merge-update from trunk

• renamed interal_selectionChanged() to selectionChanged_internal()

• moved parsing message section to top of details view (fixes #1659)

merge-update from trunk

remove logging for DerivedUnitFacadeNotSupportedException as it is handled #3846

• added finally-clause for asynchronous delay flag #2754

merge-update from trunk

merge-update from trunk

eclipse preference changes

• implemented asynchronous selection changed event for subclasses of AbstractCdmEditorViewPart
  • all sub classes must implement internal_selectionChanged() method where the usual selection handling is done
  • the super class invokes internal_selectionChanged() asynchronously...

• fixed possible NPE

Moved all logging and dialog functionality to the new class MessagingUtils.
Refactoring code to adapt to above change.
Added new custom error dialog - CdmErrorDialog
Added runtime exception handling to the ApplicationWorkbenchAdvisor by adding a custom status handler

reintegrated redlist branch into trunk

• added type information to DTO
  • enhanced media labeling

• adapted some labels in DerivateLabelProvider

• set selection to UNKNOWN when datasource is disconnected

• removed accidentally commited LibrAlign code

merge-update from trunk

• generalized adding MediaSpecimen in DerivateView

• reload last entered access point in wizard space
  • added validation to access point text field

• changed "Original Label Data Field" to use data binding
  • added property change listener support for the field

• added property change listener to original data label
  • fixed conversation binding when getting derivate labels

• removed debug output
  • made DerivateLabelProvider use occurrence service

• fixed class cast exception

• saved last parameters entered for specimen search

editor changes for red list project (datasource view and create new datasource from file menu)

• added section for "Original Label Data" to DetailsView (#4254)

• fixed potential session exceptions during closing/saving

• added "Published in" parameter to MediaSpecimen DetailsView (#4239)

• added functionality to filter assigned specimens in the DerivateSearchView (fixes #4252)

• add placeholder for Media label

• list "Specimen Details" second in DetailsView (only for campanula, fixes #4235)

• added conversation/session support to DerivateLabelProvider
  • GUI widgets using the provider need to provide a conversation/session to avoid LazyInitializationException

• implemented differentiation of the three image types (Artwork, Living Plant Photo, Specimen Scan) in the DerivateView and DetailsView

• implemented derivate specific textual representation in DerivateView

• changed date format to mm-yyyy

• added new DataImportEditor for GbifResponses
  • allows querying for original record via context menu

• adapted info text for import wizard
  • added toggle button for date field

• added date support for query parameter in specimen search
  • linked some more query parameters

• extended specimen search with provider selection (GBIF, BioCase)

refactoring to change the specific (I)CdmDataSource to the more generic (I)CdmSource to prepare fro remoting
CloneDataSourceHandler : new handler to clone a datasource

• simplified showParts() method in DetailsViewer for showing empty page

• set default derivate typ filter to "unknown"

• javadoc

removed repeated call to get all cdm sources

• refactored context menu for DerivateView to be programmatic instead of declarative (using plugin.xml)
  • fixed icon bug for DerivateSearchView

• added update() method to DerivateView
  • display different icon for SingleReads linked to multiple Sequences

• added Copy/Paste for SingleRead->Sequence to DerivateView
  • copying actually just creates a link

• removed Amplification as a TreeNode from the DerivateView
  • added Amplification to DetailsView of SingleRead as an EntitySelectionElement

• reset input fields of DerivateSearchView when context stops

• added drag'n'drop support for Sequences
  • added context listener to DerivateSearchView
  • refactored MVC pattern of DerivateSearchView

• fixed class cast exception resulting from TreeNodes of DerivateView

• implemented EntitySelectionElement for Primer
  • adapted details views with primer selection element

• refactored selection of DerivateView to be TreeNode
  • adapted selection handling
  • restructured derivate hierarchy
  • Amplifications are now a direct child of Sequences
  • the can only be created when having a SingleRead
  • this representation does not affect the cdm structure

• added missing DNA Quality section

• added code to show icon for Amplification, Sequence and SingleRead (image files still missing)
  • removed text fields for media file in dna DetailsViews
  • added contig file in Sequence DetailsView

• added cascading save to pherogram (Media) of SingleRead
  • added media section to DetailsViews for Amplification (gel photo) and SingelRead (pherogram)

• updated SpecimenImportWizard
  • refactored BioCase querying to be a separate job

• added preference which shows determination section only for FieldUnits in the DetailsView
  • added missing parameters for SingleRead DetailsView

• added "Search"-Button to DerivateSearchView

• enabled DerivateType filter in DerivateSearchView

• added combo controller to combo field in DerivateSearchView