EDIT

Test case for SequenceIDIterator added.

Context menu entry for exporting alignment files added.
ExportSingleReadAlignmentHandler renamed to ExportSequenceToFileHandler.

Exported packages of molecular plugin updated.
Basic export functionality for direct export of consensus sequence alignments implemented (untested).

Fix dependencies and model update

Initial version of ExportSingleReadAlignmentWizardPage added.

Merge branch 'develop' into LibrAlign

I18n

Updated version in pom / project files to taxeditor version : 4.0.0-SNAPSHOT and cdmlib version : 4.0.0-SNAPSHOT

Remove unused dependencies from MANIFEST.MF #5530

Refactor SingleReadContextMenu #5406

• split into separate commands, property testers and menu items
• adjusted molecular context menu entries to be grouped together with singler read entries

Structure derivative editor context menu (#5406)

• fixed context menu bug where some items would only show up every second time (menuManager.setRemoveAllWhenShown(true); //<- was the trick)

Updated version in pom / project files to taxeditor version : 3.13.0-SNAPSHOT and cdmlib version : 3.13.0-SNAPSHOT

Update eclipse compile / runtime to JavaSE-1.7

Conflicts:
eu.etaxonomy.taxeditor.application/.classpath

Revert "Updated version in pom / project files to taxeditor version : 3.13.0-SNAPSHOT and cdmlib version : 3.13.0-SNAPSHOT"

This reverts commit 9524fa3910c8335a6cbcb656f9aacaca01a3f5ca.

Updated version in pom / project files to taxeditor version : 3.13.0-SNAPSHOT and cdmlib version : 3.13.0-SNAPSHOT

#5300 Implement remoting in Alignment Editor

Fix versions

Revert project versions to 3.11.0-SNAPSHOT

Updated version in pom / project files to taxeditor version : 3.12.0-SNAPSHOT and cdmlib version : 3.12.0-SNAPSHOT

updating poms for 3.11.0-SNAPSHOT development

Revert project versions to 3.10.0-SNAPSHOT

Updated version in pom / project files to taxeditor version : 3.11.0-SNAPSHOT and cdmlib version : 3.11.0-SNAPSHOT

updating poms for 3.10.0-SNAPSHOT development

Revert project versions to 3.9.0-SNAPSHOT

Updated version in pom / project files to taxeditor version : 3.10.0-SNAPSHOT and cdmlib version : 3.10.0-SNAPSHOT

updating poms for 3.9.0-SNAPSHOT development

Revert project versions to 3.8.0-SNAPSHOT

Updated version in pom / project files to taxeditor version : 3.9.0-SNAPSHOT and cdmlib version : 3.9.0-SNAPSHOT

Revert "Updated version in pom / project files to taxeditor version : 3.9.0-SNAPSHOT and cdmlib version : 3.9.0-SNAPSHOT"

This reverts commit 7ed2ce1e9eca6a9dd72c740e72efdcd6ef1135c9.

Revert "Revert project versions to 3.8.0-SNAPSHOT"

This reverts commit e8268306693f047beef36ce53524adc00946cf74.

Revert project versions to 3.8.0-SNAPSHOT

Updated version in pom / project files to taxeditor version : 3.9.0-SNAPSHOT and cdmlib version : 3.9.0-SNAPSHOT

Merge branch 'develop' into LibrAlign

Implementation of AlignmentEditorPasteHandler changed.

Paste action for AlignmentEditor added.

Shared functionality moved from AlignmentEditorCopyHandler to AlignmentModelUtils in LibrAlign.

JavaDoc extended.
Different LibrAlign model action used in AlignmentEditorCutHandler.

Cut action for AlignmentEditor implemented.

Shared clipboard added to AlignmentEditor. (Should be moved to a global EDITor class in the future.)

AbstractFocusedAlignmentAreaHandler added.

Some general methods moved from AlignmentEditor to SWTUtils in bioinfweb.commons.

AlignmentEditorCopyHandler now sets current action status.

Move property tester to editor plugin

AlignmentEditorCopyHandler now offers copying functionality as a static method.
Copying not performed, if no nucleotides are selected.

Moved functionality to be shared from AlignmentEditorCopyHandler to AlignmentEditor.
AlignmentEditorCopyHandler refactored.

Initial implementation of AlignmentCopyHandler finished.
Minor changes.

Add Copy functionality to AlignmentEditor

Test implementation of Copy action added to AlignmentEditor.

Merge branch 'develop' into LibrAlign

Correct config for molecular plugin

Minor changes.

Fixed NPE when loading single reads without attached pherogram.

Added missing molecular plugin projects

Remove unused folder

Rename aggregator to lib

Integrate molecular plugins

Merge branch 'LibrAlign' into develop

Fixed NPE when saving an alignment with a read without attached pherogram.

Updated version due to trunk merge

Fix menu contributions

Dependency refactoring

Arranged classes and classpath in accordance to other taxeditor projects.

• added handler to exported packages

• moved "Add..." menu item to the bottom to avoid other items not to be drawn

• fixed dependencies

Missing LibrAlign BioJava1 dependency added to molecular plugin project.

Initial import of plugin files