Project

General

Profile

Download (11 KB) Statistics
| Branch: | Tag: | Revision:

# Date Author Comment
7417db95 11/17/2016 07:17 PM Ben Stöver

Exported single read sequences are now filled up with gaps. (Will be dependent on a parameter in the future.)
Texts in ExportSequenceToFileHandler extzernalized and translated.

9a9359ce 11/14/2016 05:34 PM Ben Stöver

New JPhyloIO package now exported by molecular.lib.
SingleReadAlignmentPredicates renamed to SingleReadAlignmentRDFXMLConstants.
Pherogram alignment shifts are now written to single read export unsing a custom ObjectTranslator implementation.

4f39e7d4 10/27/2016 07:31 PM Ben Stöver

CDMSequenceMatrixAdapter now exports sequence metadata.

95857d53 10/27/2016 03:55 PM Ben Stöver

Bug fix: CDMSequenceMatrixAdapter now does not create CharacterSetIntervalEvents if the alignment has no columns.

c37c8506 10/22/2016 02:36 PM Ben Stöver

Plugin molecular.lib refactored to use direct project dependencies. This should not be merged into trunk, since this is only for development state. (Currently the trunk is anyway already using different Maven dependencies.)
Adjustments to recent changes in JPhyloIO.

bc036167 06/23/2016 05:33 PM Ben Stöver

Bug fix: CDMSequenceMatrixAdapter now defines valid columns for its character set.
Draft for ExportSingleReadAlignmentWizard added.

cda3a81a 06/23/2016 03:30 PM Ben Stöver

Molecular plugin adjusted to recent changes in JPhyloIO.

e7fb4208 06/04/2016 12:47 PM Ben Stöver

Debug outputs removed.
Token set added to CDMSequenceMatrixAdapter.

01787847 06/02/2016 06:04 PM Ben Stöver

Debug output added to ExportSequenceToFileHandler.
Bug fix in CDMSequenceMatrixAdapter.
Typo correction.

76e5c721 04/29/2016 08:09 PM Ben Stöver

Exported packages of molecular plugin updated.
Basic export functionality for direct export of consensus sequence alignments implemented (untested).