LibrAlign dependency version updated.
TIC dependecy version updated.
Removed double reference to TIC in molecular.lib.
Alternative versions for build.properties added. Current state set to "dependencies from JARs". (Can be merged to trunk in this state.)
pom.xml and MANIFEST.MF updated in molecular.lib.
Adjustments to project structure changes in JPhyloIO.
Missing dependency Apache commons.lang added to molecular.lib.
Single read alignment export feature now makes use of wizard. (Selecting which sequences to export is not yet supported.)
Plugin molecular.lib refactored to use direct project dependencies. This should not be merged into trunk, since this is only for development state. (Currently the trunk is anyway already using different Maven dependencies.)
Adjustments to recent changes in JPhyloIO.
Unnecessary renaming operations removed from POM.
Apache commons.collections dependency is now copied and exported.
MANIFEST in molecular.lib adjusted to use SNAPSHOT releases again.
Merge branch 'develop' into LibrAlign
Set molecular plugins to fixed version number
Exports of plugin molecular.lib updated.
Rename aggregator to lib