fix delete polytomouskeynode and improve merge in bulk editor
Merge branch 'LibrAlign' into develop
Remove cdmViewer extension usage
Set Visibility according to CdmStore connection
merge-update from trunk
Add unimplemented methods to transient service
Update transient service to be compatible with cdmlib service
Updated version in pom / project files to taxeditor version : 3.8.0-SNAPSHOT and cdmlib version : 3.8.0-SNAPSHOT
Updating develop poms back to pre merge state
updating poms for branch'release/3.7.0' with non-snapshot versions
Revert project versions to 3.7.0-SNAPSHOT
Updated version in pom / project files to taxeditor version : 3.7.0 and cdmlib version : 3.7.0
Updated version in pom / project files to taxeditor version : 3.7.0-SNAPSHOT and cdmlib version : 3.7.0-SNAPSHOT
updating poms for 3.8.0-SNAPSHOT development
Reverted all LibrAlign changes (are now in molecular project)
Refactor ICdmViewer framework
Removed unnecessary ExecutionEvent
Fix conversion of ShiftChanges to Shifts
Make editor transient term service compatible with cdmlib term service
Use UUIDs instead of CDM objects in AlignmentEditorInput
This avoids session conflicts because the object will be loaded into the correct session when processing the editor input during initialization of the editor.
Re-load sequence to avoid session conflicts.
Adjustments to recent module changes in bioinfweb.commons.
AlignmentEditor.createTestContents() marked as deprecated.
InternalError thrown, if a single read alignment shall be saved that contains new single reads, which have been added in the AlignmentEditor. (Implementation does not make sense before the decision whether #4740, #4745 or #4746 shall be implemented.)
Error message added, if a pherogram URL loaded from CDM cannot be processed correctly.
Fixed NPE, if a single read has a pherogram object without URI.
#5056 Adapt editor to service layer 'save' method refactoring in cdmlib
Adjustments to recent changes in LibrAlign.
(The additional project https://secure.bioinfweb.info/Code/svn/LibrAlign / trunk / main / info.bioinfweb.libralign.biojava1 needs to be in the workspace from now on.)
Make editor compatible with latest cdmlib service layer updates
Minor changes in implementation of AlignmentEditor.
ShowPherogramHandler now also handles single reads without attached pherograms.
Support for empty alignments and single reads without pherograms added to AlignmentEditor.
DerivateLabelProvider now used to label single read sequences.
Class path edited to include new modules from LibrAlign and TIC.
Adjustments to recent architecture changes in TIC and LibrAlign. (TIC top level project referenced from now on.)
The following projects need to be checked out into the workspace from now on:
Fix deletion of single reads in Derivative Editor
Add missing transient method
Update transient services with new delete method
Adjustments to recent changes in TIC. (EDITor Code from now on written against unreleased TIC 2.x.)
Some actions for adjusting pherogram displaying added.
PherogramViewPart that is started from within AlignmentEditor now uses a shared pherogram model to display cut positions.
Fix issues with merge conflicts
Fixes from Katja for commit issue
Position properties of LibrAlign pherogram models are now connected to according CDM node properties (yet untested).
adapt service call to model change
adapt transient service methods to cdmlib changes
Adjustments to recent changes in LibrAlign.
fixed conflicts from last commit
all delete methods need an Uuid as argument
Actions for creating and updating the consensus sequence in AlignmentEditor implemented.
ToggleInsertOverwriteHandler now also triggers enabling and disabling of ToggleLeftRightInsertionHandler when the insert key is used instead of the tool bar button.
Actions for cutting pherograms on the left and right ends added.
Action for reverse complementing single reads added....
Icons added for insert/overwrite button in AlignmentEditor tool bar.
Insert left/right in pherogram disabled when switching to overwrite mode.
Further adjustments to recent changes in LibrAlign.
fixed manifest versions
updating poms for branch'hotfix/3.6.1' with non-snapshot versions
updating poms for branch '3.6.1' with snapshot versions
Release 3.6.0 merge
updated to snapshot version
Merge branch 'master' of wp5.e-taxonomy.eu:/var/git/taxeditor into develop
Updated version in config files to 3.6.1-SNAPSHOT
Merge branch 'move-to-luna' of wp5.e-taxonomy.eu:/var/git/taxeditor into develop
Updated version in config files to 3.6.0
fix for #3998
Improve error message