EDIT

Implement taxon assignment filter and refactor DerivativeEditor

• Input no longer needs session
• editor itself keeps track of its root elements
• taxon assignment filter allows filtering specimens with/without taxon assignment or both

Merge branch 'develop' into unify_derivative_views

Update root entity merge calls to use new merge method.

Implement filter for assigned specimens

• added drop down to select filter type
• implemented filtering of specimen list

Fix layout of derivative tree

Delete unused classes

Refresh hierarchy tree after searching

Add "Show View" entry for derivative editor

Move derivative search view classes to taxeditor.editor

• adapted DerivateView

Fix child hierarchy for DnaSamples

• Fixed adding and displaying of sub derived units like e.g. media

Fix null selection for existing media

Add remoting checks for merge, Move to merge call which returns updated transient object

Add check to ensure merge in editors is performed only in remoting

#5252 Add remove method to manually remove root derivate

#5242, #5223 Improve performance of derivate loading and editing

Merge branch 'develop' into remoting-4.0

Conflicts:
eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/dataimport/transientServices/TransientTaxonService.java

I18n for derivative module

I18n for Specimen Editor

Merge branch 'develop' into remoting-4.0

Conflicts:
eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/dataimport/transientServices/TransientDescriptionService.java
eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/dataimport/transientServices/TransientOccurenceService.java...

Trim code

Fix new occurrence / sequence move method calls

#5187 Use new move methods with uuids as args

Merge branch 'develop' into remoting-4.0

Conflicts:
eu.etaxonomy.taxeditor.cdmlib/.classpath
eu.etaxonomy.taxeditor.editor/plugin.xml
eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/MultiPageTaxonEditor.java
eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/derivate/DerivateView.java...

#5188 Add special for deleting sequence

#5186 Fix erros in sequence merge and creating new specimen

Disable MediaView for bulk editor (#5162)

• bulk editor does only activate media view when showing taxa
• code trimming

Merge branch 'develop' into remoting-4.0

Conflicts:
eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/dataimport/transientServices/TransientOccurenceService.java
eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/dataimport/transientServices/TransientTaxonService.java...

Rename Derivative View to Derivative Editor

Add method to sessionOwner objects to fine tune performance using property paths

Update ICdmEntitySessionEnabled to no longer extend ICdmChangeListener

#5067 Integrate remoting sessions in derivate hierachy views, Adapt existing actions

Fix deletion of single reads in Derivative Editor

• removed inBetween target for Derivative Editor (fixes #4966)

• changed "derivate" to "derivatives"

• added derivate hierarchy section
  • refactored DerivateContentProvider

• fixed possible NPE

• added context menu optio to create a media specimen with an existing media (fixes #2385)

• refactored delete configrator dialog
  • added dialog to derivate deletion

• close Derivate Editor if all elements are deleted

• added option for deep delete (with children) to DerivateEditor

• added context menu option to create a new FieldUnit in DerivateEditor

• allow creation of derivates only when editor is not dirty

• added delete result as warn message

• deleted usage of commented method in cdmlib

• fixed possible NPE when opening DerivateView for a taxon when no derivates exist

• re-enabled MediaViewPart for DerivateView (#4475)

• added clear button to DerivateSearchView
  • made use of cdmlib service to get associated specimen for one taxon (#4506)

• added context menu entry to taxon navigator to open associated derivates in DerivateEditor
  • added taxon filter to DerivateSearchView (non-functional) (#4506)

• added static method to DerivateLabelProvider to get the derivate text
  • refactored moving of derivates to use the operation framework.
  • immplemented undo/redo

• DerivateView and BulkEditor trigger selection change event for MediaViewPart (fixes #4475)

• extended DerivateSearchView to allow multiple selection
  • added context menu to open multiple elements in DerivateView
  • extended DerivateView to show multiple derivate hierarchies in one view

• refactored DerivateViewEditorInput to use UUIDs instead of CDM entities
  • added delete operation to DerivateView (currently only deleting leafs of the derivate tree is allowed)

• used more pepresentative DerivationEventTypes when creating derivates via DerivatView

• fixed class cast exception

• adapted derivate hierarchy assembly to cdmlib3.4 changes (TissueSample, DnaSample as one class)

• generalized sample designation GUI elements
  • added sample designation to TissueSample details view
  • added some more parameters to TissueSample details view

• added empty "Delete Derivate" functionality to DerivateView

merge-update from trunk

• rename IDirtyMarkableSelectionProvider to IDirtyMarkable
  • extended interface IDirtyMarkable #2645
  • added method forceDirty()

merge-update from trunk

• added support for image gallery creation for FieldUnits (#4389)
  • added support for DerivateView to MediaView

merge-update from trunk

• fixed possible LazyInitializaitionException in DerivateLabelProvdider

merge-update from trunk

• fixed typo

merge-update from trunk

• implemented setFocus() of all EditorParts
  • this is to avoid "java.lang.Exception: java.lang.RuntimeException: WARNING: Prevented recursive attempt to activate part"
  • either set the focus to shell or set it to the viewer used

fix for #2754

Moved all logging and dialog functionality to the new class MessagingUtils.
Refactoring code to adapt to above change.
Added new custom error dialog - CdmErrorDialog
Added runtime exception handling to the ApplicationWorkbenchAdvisor by adding a custom status handler

• added missing entry for context menu in DerivateView

• expand branch in DerivateView where a new derivate created and select the derivate

• generalized adding MediaSpecimen in DerivateView

• commented workbenchShutdown() content

• fixed potential session exceptions during closing/saving

• changed error dialog text

• added feedback if drag&drop in DerivateVie does not work

• added new dynamic context menu for DerivateSearchView
  • cleaned up code

• added conversation/session support to DerivateLabelProvider
  • GUI widgets using the provider need to provide a conversation/session to avoid LazyInitializationException

• implemented differentiation of the three image types (Artwork, Living Plant Photo, Specimen Scan) in the DerivateView and DetailsView

• implemented derivate specific textual representation in DerivateView

• removed debug/test code

• wrapped DerivateView selection to pass a handle on one DerivateView when dragging into another allowing refresh on that view

• only allow dragging in DerivateView when view is not dirty
  • added missing methods to transient services
  • exposed dto package in cdmlib project
  • some renaming

• removed unused PropertyTester

• fixed FactualData view to show data for selection of DerivateView
  • renamed util method

• added memento restore mechanism to DerivateView (partially)

• javadoc

• refresh view instead of setting the editor input

• cleaned DerivateView context menu code and classes

• refactored context menu for DerivateView to be programmatic instead of declarative (using plugin.xml)
  • fixed icon bug for DerivateSearchView

• only show Copy/Paste context menu for SingleRead/Sequence

• added update() method to DerivateView
  • display different icon for SingleReads linked to multiple Sequences

• added util method to get the TreeNode out of a selection

• added Copy/Paste for SingleRead->Sequence to DerivateView
  • copying actually just creates a link

• removed Amplification as a TreeNode from the DerivateView
  • added Amplification to DetailsView of SingleRead as an EntitySelectionElement

• fix cdmlib version number in .classpath (why does maven not generate this anymore?)
  • added "molecular" package to exported packages
  • organize imports for new molecular services

• used "move derivate" methods of service layer
  • added java doc

• moved move-logic to occurrence service layer

• added drag'n'drop support for Sequences
  • added context listener to DerivateSearchView
  • refactored MVC pattern of DerivateSearchView

• added support for SingleRead drag'n'drop

• implemented drag'n'drop support for SpecimenOrObservationBase in Derivate View