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# Date Author Comment
bc036167 06/23/2016 05:33 PM Ben Stöver

Bug fix: CDMSequenceMatrixAdapter now defines valid columns for its character set.
Draft for ExportSingleReadAlignmentWizard added.

3b957453 04/29/2016 08:40 PM Ben Stöver

Test case for SequenceIDIterator added.

b4979250 04/29/2016 08:23 PM Ben Stöver

Context menu entry for exporting alignment files added.
ExportSingleReadAlignmentHandler renamed to ExportSequenceToFileHandler.

76e5c721 04/29/2016 08:09 PM Ben Stöver

Exported packages of molecular plugin updated.
Basic export functionality for direct export of consensus sequence alignments implemented (untested).

cdcb5ddf 04/18/2016 12:51 PM Ben Stöver

Initial version of ExportSingleReadAlignmentWizardPage added.

83e80374 04/12/2016 10:03 AM Patrick Plitzner

Merge branch 'develop' into LibrAlign

51c5b735 10/09/2015 02:17 PM Cherian Mathew

Add missing files to ignore on merge conflict

3cb0b24a 10/09/2015 01:55 PM Cherian Mathew

Add files to ignore on merge conflict if the 'ours' driver is configured

ab9f98b3 09/02/2015 11:29 AM Ben Stöver

Paste action for AlignmentEditor added.

65fe133d 08/26/2015 04:07 PM Ben Stöver

Cut action for AlignmentEditor implemented.

4e400041 08/26/2015 11:52 AM Ben Stöver

AbstractFocusedAlignmentAreaHandler added.

479060ec 08/25/2015 08:13 PM Ben Stöver

AlignmentEditorCopyHandler now sets current action status.

43c0aada 06/05/2015 01:23 PM Cherian Mathew

Merge branch 'master' of wp5.e-taxonomy.eu:/var/git/taxeditor into remoting-4.0

Conflicts:
.gitattributes
eu.etaxonomy.taxeditor.cdmlib/.classpath
eu.etaxonomy.taxeditor.cdmlib/META-INF/MANIFEST.MF
eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/TaxonEditorInput.java...

a7821cf5 06/04/2015 01:23 PM Patrick Plitzner
  • added wizard page listener to react on ENTER key #4853
e382ff8f 06/04/2015 12:54 PM Patrick Plitzner
  • added context menu entry for editing classifications
    • used generic extension point for cdmViewer in navigation project (#4865)
b0d7867b 05/26/2015 05:07 PM Patrick Plitzner
  • removed empty element from combo dropdown #4448
8e4118ad 05/26/2015 11:40 AM Patrick Plitzner
  • refactored naming of modifier section #4448
4b94c9cf 05/22/2015 10:54 AM Cherian Mathew

Merge branch 'move-to-luna' into remoting-4.0

Conflicts:
eu.etaxonomy.taxeditor.cdmlib/.classpath
eu.etaxonomy.taxeditor.cdmlib/META-INF/MANIFEST.MF
eu.etaxonomy.taxeditor.cdmlib/build.properties
eu.etaxonomy.taxeditor.cdmlib/pom.xml
eu.etaxonomy.taxeditor.cdmlib/src/main/resources/eu/etaxonomy/cdm/remotingApplicationContext.xml...

f399aa02 05/20/2015 02:16 PM Cherian Mathew

corrected / moved existing tests

635b598e 05/18/2015 11:59 AM Katja Luther

bulkeditor: merge of teams and persons and convert team to person and person to team

dbde6b75 05/11/2015 01:48 PM Katja Luther

natural order preferences

f144593a 05/11/2015 01:47 PM Katja Luther

add dialog for the natural order preference

dcec2a45 05/11/2015 11:04 AM Katja Luther

#4855 add MoveSynonymToAnotherAcceptedTaxonHandler and some clean up of the plugin.xml especially the delete

0f0c1e8c 05/07/2015 02:17 PM Patrick Plitzner
  • added property tester to check if CdmStore is connected (#4809, #4856)
35fc6f00 04/29/2015 05:17 PM Alexander Oppermann

Partial fix of Ticket #4728

faa30aca 04/29/2015 04:35 PM Patrick Plitzner
  • implemented and added recommended modifier section to Feature DetailView (#4448)
a55772e7 04/28/2015 05:16 PM Patrick Plitzner
  • implemented and added statistical measures section to Feature DetailView (#4448)
31645e4f 04/28/2015 04:19 PM Alexander Oppermann

Fix Ticket #4729

3831e623 04/28/2015 03:24 PM Alexander Oppermann

Fix Ticket #4592

9f69b92d 04/28/2015 02:59 PM Patrick Plitzner
  • implemented geo scope detail section (#4592)
cab4c925 04/28/2015 10:38 AM Patrick Plitzner
  • added state vocabulary section to Feature DetailView (#4448)
    • implemented measurement unit section
4508543c 04/27/2015 04:57 PM Patrick Plitzner
  • added collection section for state vocabularies (#4448)
a49946db 04/27/2015 11:35 AM Patrick Plitzner
  • imlemente vocabulary combo selection element (#4448)
f638efaa 04/24/2015 01:47 PM Andreas Müller

fix NPE bug and termloading bug for Usage Records #4247

3bf355d6 04/22/2015 06:09 PM Andreas Müller

I18n for bulkeditor type #4553

c5e35ea3 04/22/2015 05:00 PM Andreas Müller

Some changes on TaxEditor i18n: #4553

f2c1e4b7 04/22/2015 01:40 PM Katja Luther

export of csv files with name informations and for Print output(for caryophyllales)

57318058 04/14/2015 04:57 PM Patrick Plitzner
  • i18n language preferences
968295ec 04/08/2015 02:40 PM Patrick Plitzner
  • added icons for derivates which have character data attached
2d6df6fe 03/27/2015 11:13 AM Cherian Mathew

eu.etaxonomy.taxeditor.product.with.jre : removed since the jre bundling is done on jenkins
ApplicationUtil : added UTC to beta version string
eu.etaxonomy.taxeditor.cdmlib/pom.xml : fixes problem with clean validate - ticket #4733

ea2426f6 03/24/2015 05:59 PM Cherian Mathew

reverted all changes using maven to setup jre bundle . will do this in a bash script on jenkins instead.

0c737257 03/23/2015 06:15 PM Cherian Mathew

eu.etaxonomy.taxeditor/pom.xml, eu.etaxonomy.taxeditor.product.with.jre/wo.jre : configuration for product bundled with jre
eu.etaxonomy.taxeditor.feature/pom.xml, build.properties.with.jre/wo.jre : configuration for jre dir symlinks and root dir properties...

32103a77 03/18/2015 04:02 PM Alexander Oppermann

Added Create Hierarchy Service for Editor as a experimental feature

cdd75d2d 03/03/2015 03:31 PM Patrick Plitzner
  • added Identifier details section
e63c7038 03/03/2015 12:49 PM Patrick Plitzner
  • added derivate hierarchy section
    • refactored DerivateContentProvider
bb534368 03/02/2015 10:06 AM Cherian Mathew

merge from trunk

9aa6bde8 02/26/2015 11:56 AM Patrick Plitzner
  • used original label info from facade instead of from the derived unit (fixes #4565)
3dba9fc4 02/24/2015 11:04 AM Patrick Plitzner
  • implemented framework which links an input element to viewers/editors which are able to display information about the element
    • added ICdmViewer interface
    • added extension point to register ICdmViewer
    • registered EditorCdmViewer for the taxeditor.editor plugin
45e12d2b 02/23/2015 06:21 PM Patrick Plitzner
  • added Open in Taxon Editor command to Taxon Bulk Editor (#4536)
3586a882 02/23/2015 10:43 AM Patrick Plitzner
  • refactored delete configrator dialog
    • added dialog to derivate deletion
1075da9a 02/23/2015 09:51 AM Cherian Mathew

ICachedCommonService, CachedCommonServiceImpl : moved class to service package
CdmApplicationRemoteConfiguration, AbstractPersistentCollection, AbstractLazyInitializer : refactored package of CachedCommonService
CdmServiceRequestExecutor : added code for intercepting all services and loading returned objects into current session...

56a14252 02/19/2015 05:42 PM Cherian Mathew

OpenInspectSessionsHandler : handler for opening the inspect session dialog
CacheLoader : moved recursive logic from cdm transient cacher to new class
CdmServiceCacher : now uses CacheLoader to recursively load entities
CdmTransientEntityCacher : moved recursive logic from cdm transient cacher to new class and corrected caching issues...

0ddb8392 02/17/2015 04:45 PM Cherian Mathew

CdmTransientEntityCacher, EntityCacherDebugResult : moved debug methods to debug result class
ProxyUtils : new class for util methods to do with hibernate proxy objects
ICdmEntitySessionEnabled, CdmEntitySessionInput, PolytomousKeyEditorInput, TaxonNameEditor, PolytomousKeyViewPart, TaxonNavigator, AbstractCdmViewPart, MultiPageTaxonEditor : Added getRootEntities method...

703e8efc 02/17/2015 12:43 PM Cherian Mathew

CdmRemoteCacheManager : added cache getter methods
CdmTransientEntityCacher, CdmEntitySession, CdmEntitySessionManager, ICdmEntitySession, ICdmEntitySessionManager, ICdmEntitySessionManagerObserver, MockCdmEntitySession, MockCdmEntitySessionManager , eu.etaxonomy.taxeditor.cdmlib/src/main/resources/cdmlib-ehcache.xml : added statistics config , getter method for live stats and observer to update when sessions are bound and disposed...

148679e6 02/17/2015 09:51 AM Patrick Plitzner
  • added option to toggle the delete configurator parameters in taxon deletion dialog (#4656)
e9a587e7 02/16/2015 02:57 PM Patrick Plitzner
  • added configurator settings to taxon deletion dialog
c7d830cc 02/11/2015 02:03 PM Cherian Mathew

CdmModelCacher : added recursive search in super classes
CdmTransientEntityCacher : corrected caching
EntityCacherDebugResult : new debug result object
CdmEntitySession, ICdmEntitySession, MockCdmEntitySession : added debug method
CdmEntitySessionInput : new super class for editor input objects...

5528bb74 02/05/2015 10:42 AM Cherian Mathew

refactoring and added tests

5c9343bd 02/05/2015 10:18 AM Cherian Mathew

CdmTransientEntityCacher : comments and cleanup
MockCdmEntitySessionManager, MockCdmEntitySession : implementing new interface methods
renamed ISessionEventListener to ICdmEntitySessionEnabled
ICdmEntitySession, CdmEntitySession : added methods to register session observer and add change events...

bde04797 02/02/2015 04:43 PM Cherian Mathew

reverting incorrect commit

72aa4212 02/02/2015 04:42 PM Cherian Mathew

added h2 db to resources and delete test to test class

941b3481 02/02/2015 04:40 PM Cherian Mathew

cleaned up lib dir and updated unitils version
CdmAuthenticatedHttpInvokerRequestExecutor : custom authentication executor (not used for now)
MockCdmEntitySession : mock session for stand-alone editor

79c42b3f 01/28/2015 02:26 PM Cherian Mathew

merge from trunk

82dd3471 01/27/2015 10:37 AM Cherian Mathew

editorApplicationContext : reverted stand-alone app context conf
RemotingLoginDialog : updated dialog with server fetch

8ae70850 01/27/2015 10:35 AM Cherian Mathew

updated current tests and added new ones

5e394236 01/27/2015 10:34 AM Cherian Mathew

MANIFEST.MF : New apache http client packages added
CdmServerInfo : changed name and added inner class for cdm instance
httpInvokerServiceClients : added new services
remotingApplicationContext : refactor for cache package

ea22cad6 01/27/2015 10:29 AM Cherian Mathew

migrated cache related classes to another package

5ecc7b46 01/26/2015 03:23 PM Patrick Plitzner
  • added "Move Factual Data" option to navigator context menu
862604f8 01/23/2015 02:32 PM Patrick Plitzner
  • added swagger annotations jar to taxeditor.cdmlib
5285bd70 01/22/2015 10:36 AM Cherian Mathew

CdmServerInstanceInfo, RemotingLoginDialog, ShowRemotingLoginWindowHandler : functionality for remoting login
moved classes to appropriate locations.
merged from trunk.

bc05b2c2 01/21/2015 11:34 AM Patrick Plitzner
  • added "Delete (with children)" icon
    • cleaned up plugin.xml
48a32bd3 01/20/2015 12:20 PM Cherian Mathew

merge from trunk

c7ce2226 01/20/2015 11:33 AM Cherian Mathew

ICdmEntitySessionManager, CdmEntitySessionManager, MockCdmEntitySessionManager : removed cdm entity session access methods
CdmServiceInterceptorException, CdmServiceRequestExecutor, TermServiceRequestExecutor : New executor classes to be used to execute intercept remote service requests starting with the term service...

976b9268 01/16/2015 11:04 AM Patrick Plitzner
  • added classification chooser to ABCD import wizard
94041b11 01/16/2015 11:02 AM Patrick Plitzner
  • extended DeleteHandler to also handle deletion of SpecimenDescriptions in FactualDataView
ca22953d 01/09/2015 12:47 AM Andreas Müller

merge validation editor branch to trunk

6a1330fd 12/16/2014 10:33 AM Patrick Plitzner
  • added context menu option to create a new FieldUnit in DerivateEditor
07012f35 12/15/2014 11:25 AM Andreas Müller

upgrade poi to 3.10-FINAL and add ooxml functionality

9d63eb10 12/12/2014 03:03 PM Alexander Oppermann

Renamed classes to match the new order in PreferenceMenu

52002c73 12/11/2014 05:01 PM Cherian Mathew

merge from trunk

feb81cbe 12/11/2014 03:57 PM Patrick Plitzner
  • adapted details views and wizards to cdm changes (amplifaction + amplification result)
    • added missing parameters to details views
46d0131b 12/10/2014 06:03 PM Cherian Mathew

moving tests from cdmlib to the test project

80de230c 12/10/2014 06:01 PM Cherian Mathew

updated manifest for deleted test dir
removed unnecessary commit root entity methods in session and session manager

5da981b0 12/10/2014 05:59 PM Cherian Mathew

moving tests to the eu.etaxonomy.taxeditor.test project

3de91ced 12/10/2014 12:13 PM Cherian Mathew

Fix for ticket #4519

CdmDataSourceRepository : added a new method to create default h2 data source
eu.etaxonomy.taxeditor.cdmlib : updated build paths to output test classes in test-classes dir and moved resources package to avoid conflict
ApplicationWorkbenchWindowAdvisor : added call to the new method (above) to create a default H2 db

d59e5382 12/09/2014 06:05 PM Cherian Mathew

merge from trunk

9fed8b2f 12/09/2014 06:05 PM Cherian Mathew

deleting remoting project and merge from trunk

c8cd88d1 12/09/2014 05:56 PM Cherian Mathew

forgot the test files in the last commit

58afb673 12/09/2014 05:55 PM Cherian Mathew

moving all source files from the remoting project to the cdmlib project

c53a25ad 12/09/2014 05:33 PM Cherian Mathew

updated packages for remoting source

13c5d3f0 12/09/2014 05:21 PM Alexander Oppermann

merged trunk into branch

9797b698 12/08/2014 06:28 PM Cherian Mathew

clean up

3fd7eb7e 12/08/2014 04:43 PM Cherian Mathew

moving code to remoting project

dc80da32 12/08/2014 10:20 AM Cherian Mathew

cleaning up

f55638a3 12/08/2014 10:09 AM Katja Luther
fe61f73d 12/03/2014 05:06 PM Cherian Mathew

merge from trunk

dea7cd9c 12/03/2014 04:24 PM Patrick Plitzner
  • added command, handler, double click listener to open taxa from associated taxa section in details view
    • caught runtime exception for orphaned taxa
e13ba183 12/03/2014 01:27 PM Patrick Plitzner
  • renamed interface IDerivedUnitFacadeEditor to IDerivedUnitFacadePart
    • show field unit data in NewDerivedUnitBaseWizard
e3bcee2d 12/03/2014 09:47 AM Patrick Plitzner
  • added interface IDerivedUnitFacadeEditor to tag editors that are working with DerivedUnitFacades (e.g. BulkEditor)
    • show field unit data for DerivedUnit when selected in BulkEditor
3fc39e76 12/02/2014 10:01 AM Patrick Plitzner
  • added section for associated taxa (IndividualsAssocation, TypeDesignation) to DetailsView for specimen
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