Bug fix: CDMSequenceMatrixAdapter now defines valid columns for its character set. Draft for ExportSingleReadAlignmentWizard added.
Test case for SequenceIDIterator added.
Context menu entry for exporting alignment files added. ExportSingleReadAlignmentHandler renamed to ExportSequenceToFileHandler.
Exported packages of molecular plugin updated. Basic export functionality for direct export of consensus sequence alignments implemented (untested).
Initial version of ExportSingleReadAlignmentWizardPage added.
Merge branch 'develop' into LibrAlign
Add missing files to ignore on merge conflict
Add files to ignore on merge conflict if the 'ours' driver is configured
Paste action for AlignmentEditor added.
Cut action for AlignmentEditor implemented.
AbstractFocusedAlignmentAreaHandler added.
AlignmentEditorCopyHandler now sets current action status.
Merge branch 'master' of wp5.e-taxonomy.eu:/var/git/taxeditor into remoting-4.0
Conflicts: .gitattributes eu.etaxonomy.taxeditor.cdmlib/.classpath eu.etaxonomy.taxeditor.cdmlib/META-INF/MANIFEST.MF eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/TaxonEditorInput.java...
Merge branch 'move-to-luna' into remoting-4.0
Conflicts: eu.etaxonomy.taxeditor.cdmlib/.classpath eu.etaxonomy.taxeditor.cdmlib/META-INF/MANIFEST.MF eu.etaxonomy.taxeditor.cdmlib/build.properties eu.etaxonomy.taxeditor.cdmlib/pom.xml eu.etaxonomy.taxeditor.cdmlib/src/main/resources/eu/etaxonomy/cdm/remotingApplicationContext.xml...
corrected / moved existing tests
bulkeditor: merge of teams and persons and convert team to person and person to team
natural order preferences
add dialog for the natural order preference
#4855 add MoveSynonymToAnotherAcceptedTaxonHandler and some clean up of the plugin.xml especially the delete
Partial fix of Ticket #4728
Fix Ticket #4729
Fix Ticket #4592
fix NPE bug and termloading bug for Usage Records #4247
I18n for bulkeditor type #4553
Some changes on TaxEditor i18n: #4553
export of csv files with name informations and for Print output(for caryophyllales)
eu.etaxonomy.taxeditor.product.with.jre : removed since the jre bundling is done on jenkins ApplicationUtil : added UTC to beta version string eu.etaxonomy.taxeditor.cdmlib/pom.xml : fixes problem with clean validate - ticket #4733
reverted all changes using maven to setup jre bundle . will do this in a bash script on jenkins instead.
eu.etaxonomy.taxeditor/pom.xml, eu.etaxonomy.taxeditor.product.with.jre/wo.jre : configuration for product bundled with jre eu.etaxonomy.taxeditor.feature/pom.xml, build.properties.with.jre/wo.jre : configuration for jre dir symlinks and root dir properties...
Added Create Hierarchy Service for Editor as a experimental feature
merge from trunk
ICachedCommonService, CachedCommonServiceImpl : moved class to service package CdmApplicationRemoteConfiguration, AbstractPersistentCollection, AbstractLazyInitializer : refactored package of CachedCommonService CdmServiceRequestExecutor : added code for intercepting all services and loading returned objects into current session...
OpenInspectSessionsHandler : handler for opening the inspect session dialog CacheLoader : moved recursive logic from cdm transient cacher to new class CdmServiceCacher : now uses CacheLoader to recursively load entities CdmTransientEntityCacher : moved recursive logic from cdm transient cacher to new class and corrected caching issues...
CdmTransientEntityCacher, EntityCacherDebugResult : moved debug methods to debug result class ProxyUtils : new class for util methods to do with hibernate proxy objects ICdmEntitySessionEnabled, CdmEntitySessionInput, PolytomousKeyEditorInput, TaxonNameEditor, PolytomousKeyViewPart, TaxonNavigator, AbstractCdmViewPart, MultiPageTaxonEditor : Added getRootEntities method...
CdmRemoteCacheManager : added cache getter methods CdmTransientEntityCacher, CdmEntitySession, CdmEntitySessionManager, ICdmEntitySession, ICdmEntitySessionManager, ICdmEntitySessionManagerObserver, MockCdmEntitySession, MockCdmEntitySessionManager , eu.etaxonomy.taxeditor.cdmlib/src/main/resources/cdmlib-ehcache.xml : added statistics config , getter method for live stats and observer to update when sessions are bound and disposed...
CdmModelCacher : added recursive search in super classes CdmTransientEntityCacher : corrected caching EntityCacherDebugResult : new debug result object CdmEntitySession, ICdmEntitySession, MockCdmEntitySession : added debug method CdmEntitySessionInput : new super class for editor input objects...
refactoring and added tests
CdmTransientEntityCacher : comments and cleanup MockCdmEntitySessionManager, MockCdmEntitySession : implementing new interface methods renamed ISessionEventListener to ICdmEntitySessionEnabled ICdmEntitySession, CdmEntitySession : added methods to register session observer and add change events...
reverting incorrect commit
added h2 db to resources and delete test to test class
cleaned up lib dir and updated unitils version CdmAuthenticatedHttpInvokerRequestExecutor : custom authentication executor (not used for now) MockCdmEntitySession : mock session for stand-alone editor
editorApplicationContext : reverted stand-alone app context conf RemotingLoginDialog : updated dialog with server fetch
updated current tests and added new ones
MANIFEST.MF : New apache http client packages added CdmServerInfo : changed name and added inner class for cdm instance httpInvokerServiceClients : added new services remotingApplicationContext : refactor for cache package
migrated cache related classes to another package
CdmServerInstanceInfo, RemotingLoginDialog, ShowRemotingLoginWindowHandler : functionality for remoting login moved classes to appropriate locations. merged from trunk.
ICdmEntitySessionManager, CdmEntitySessionManager, MockCdmEntitySessionManager : removed cdm entity session access methods CdmServiceInterceptorException, CdmServiceRequestExecutor, TermServiceRequestExecutor : New executor classes to be used to execute intercept remote service requests starting with the term service...
merge validation editor branch to trunk
upgrade poi to 3.10-FINAL and add ooxml functionality
Renamed classes to match the new order in PreferenceMenu
moving tests from cdmlib to the test project
updated manifest for deleted test dir removed unnecessary commit root entity methods in session and session manager
moving tests to the eu.etaxonomy.taxeditor.test project
Fix for ticket #4519
CdmDataSourceRepository : added a new method to create default h2 data source eu.etaxonomy.taxeditor.cdmlib : updated build paths to output test classes in test-classes dir and moved resources package to avoid conflict ApplicationWorkbenchWindowAdvisor : added call to the new method (above) to create a default H2 db
deleting remoting project and merge from trunk
forgot the test files in the last commit
moving all source files from the remoting project to the cdmlib project
updated packages for remoting source
merged trunk into branch
clean up
moving code to remoting project
cleaning up