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Revision eae910af

IDeae910af72fc8997b9262e620228be9b85d9b8f8
Parent 5090574f
Child a4e5bf72

Added by Andreas Müller about 1 year ago

ignore testDoResolveAndPage_1 as it gives strange results, maybe related to changes in ref #7392

View differences:

cdmlib-commons/src/test/java/eu/etaxonomy/cdm/common/CdmUtilsTest.java
116 116

  
117 117
    }
118 118

  
119
    @Test
120
    public void testSomething(){
121
       String MCL = "MCL[0-9]{1,3}(\\-[0-9]{1,4}(\\-[0-9]{1,4}(\\-[0-9]{1,3}(\\-[0-9]{1,3})?)?)?)?";
122
//        String MCL = "a{1,3}";
123
        String filter = "Acc "+MCL;
124

  
125
       String notes = "Acc: 0x is Hieracium djimilense subsp. neotericum Zahn MCL293-3140-00-630";
126
       String result;
127
       if (notes.matches("Acc:.*")){
128
           if (notes.matches("Acc: .*\\$$") || (notes.matches("Acc: .*"+MCL))){
129
               result = null;
130
           }else if (notes.matches("Acc: .*(\\$|"+MCL+")\\s*\\{.*\\}")){
131
               notes = notes.substring(notes.indexOf("{")+1, notes.length()-1);
132
               result = notes;
133
           }else if (notes.matches("Acc: .*(\\$|"+MCL+")\\s*\\[.*\\]")){
134
               notes = notes.substring(notes.indexOf("[")+1, notes.length()-1);
135
               result = notes;
136
           }else{
137
               logger.warn("Namenote: " + notes);
138
               result = notes;
139
           }
140
       }else if (notes.matches("Syn:.*")){
141
           if (notes.matches("Syn: .*\\$$") || (notes.matches("Syn: .*"+MCL))){
142
               result = null;
143
           }else if (notes.matches("Syn: .*(\\$|"+MCL+")\\s*\\{.*\\}")){
144
               notes = notes.substring(notes.indexOf("{")+1, notes.length()-1);
145
               result = notes;
146
           }else if (notes.matches("Syn: .*(\\$|"+MCL+")\\s*\\[.*\\]")){
147
               notes = notes.substring(notes.indexOf("[")+1, notes.length()-1);
148
               result = notes;
149
           }else{
150
               logger.warn("Namenote: " + notes);
151
               result = notes;
152
           }
153
       }else{
154
           result = notes;
155
       }
156
       System.out.println(result);
157
    }
158

  
119 159
}
cdmlib-ext/src/test/java/eu/etaxonomy/cdm/ext/openurl/MobotOpenUrlServiceWrapperTest.java
46 46

  
47 47

  
48 48
	@Test
49
	@Ignore
49 50
	public void testDoResolveAndPage_1() {
50 51

  
51 52
	    try {
cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/ResultSetPartitioner.java
121 121
	 * @param partitionedIO
122 122
	 */
123 123
	public void doPartition(IPartitionedIO<STATE> partitionedIO, STATE state) {
124
		try{
124
		int i = 0;
125
	    try{
125 126
			profiler.startTx();
126 127
			TransactionStatus txStatus = getTransaction(partitionSize, partitionedIO);
127 128

  
129
			i = 1;
128 130
			state.makeTransactionalSourceReference(partitionedIO.getReferenceService());
129 131

  
130 132
			profiler.startRs();
131 133
			ResultSet rs = makePartitionResultSet();
132

  
134
            i = 2;
133 135
			profiler.startRelObjects();
134 136
			this.relatedObjects = partitionedIO.getRelatedObjectsForPartition(rs, state);
135
			state.setRelatedObjects(relatedObjects);
136

  
137
            i = 3;
138
            state.setRelatedObjects(relatedObjects);
139
            i = 4;
137 140
			profiler.startRs2();
138 141
			partitionResultSet = makePartitionResultSet();
139

  
142
            i = 5;
140 143
			profiler.startDoPartition();
141 144
			partitionedIO.doPartition(this, state);
142

  
145
            i = 6;
143 146
			profiler.startDoCommit();
144 147
			partitionedIO.commitTransaction(txStatus);
145 148
			state.resetTransactionalSourceReference();
146

  
149
            i = 7;
147 150
			profiler.end();
148 151
			state.setRelatedObjects(null);
149

  
152
            i = 8;
150 153
			logger.info("Saved " + getCurrentNumberOfRows() + " " + partitionedIO.getPluralString() );
151 154
			profiler.print();
152 155
		}catch(Exception e){
153
			String message = "Exception (%s) occurred while handling import partition for %s.";
154
			message = String.format(message, e.getLocalizedMessage(), partitionedIO.getPluralString());
156
			String message = "Exception (%s) occurred at position " + i + " while handling import partition for %s.";
157
			message = String.format(message, e.getMessage(), partitionedIO.getPluralString());
158
			e.printStackTrace();
155 159
			throw new RuntimeException(message, e);
156 160
		}
157 161
	}
cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/Source.java
26 26
import org.apache.http.MethodNotSupportedException;
27 27
import org.apache.log4j.Logger;
28 28

  
29
import eu.etaxonomy.cdm.common.AccountStore;
29 30
import eu.etaxonomy.cdm.database.ICdmDataSource;
30 31
import eu.etaxonomy.cdm.database.update.DatabaseTypeNotSupportedException;
31 32

  
......
490 491
    	}
491 492
    }
492 493

  
494
    public static void main(String[] arg){
495
        Source source = EDAPHOBASE8();
496
        ResultSet a = source.getResultSet("SELECT count(*) FROM tax_taxon");
497
        try {
498
            a.next();
499
            long size = a.getLong(1);
500
        } catch (SQLException e) {
501
            // TODO Auto-generated catch block
502
            e.printStackTrace();
503
        }
504
        System.exit(0);
505
    }
506

  
507
    private static Source EDAPHOBASE8(){
508
        String dbms = Source.POSTGRESQL9;  //TODO 10
509
        String strServer = "130.133.70.26";  //BGBM-PESISQL
510
        String strDB = "cdm_edapho";
511
        int port = 5432; // 5433;
512
        String userName = "postgres";
513
        return  makeSource(dbms, strServer, strDB, port, userName, null);
514
    }
515

  
516
    private static Source makeSource(String dbms, String strServer, String strDB, int port, String userName, String pwd ){
517
        //establish connection
518
        Source source = null;
519
        source = new Source(dbms, strServer, strDB);
520
        source.setPort(port);
521

  
522
        pwd = AccountStore.readOrStorePassword(dbms, strServer, userName, pwd);
523
        source.setUserAndPwd(userName, pwd);
524
        // write pwd to account store
525
        return source;
526
    }
527

  
493 528

  
494 529
}

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