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Revision 068072a1

ID068072a182988eaaa257397b19cae67c32323105
Parent c2447263
Child a0e2b61c

Added by Katja Luther over 1 year ago

smaller changes in abcd import

View differences:

cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/specimen/abcd206/in/molecular/AbcdGgbnParser.java
248 248
                    //TODO: this can be different from the actual length in ABCD but not in CDM!
249 249
                    sequence.getConsensusSequence().setLength(consensusSequenceLength.intValue());
250 250
                }
251
                //contig file URL
251
                //contig file URL geneticAccessionNumberURI
252 252
                NodeList consensusSequenceChromatogramFileURIList = sequencing.getElementsByTagName(prefix+"consensusSequenceChromatogramFileURI");
253
                //NodeList consensusSequenceChromatogramFileURIList = sequencing.getElementsByTagName(prefix+"geneticAccessionNumberURI");
253 254
                URI uri = AbcdParseUtility.parseFirstUri(consensusSequenceChromatogramFileURIList, report);
254 255
                if (uri != null && uri.toString().endsWith("fasta")){
255 256
                    state.putSequenceDataStableIdentifier(uri);

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