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cdmlib @ master

# Date Author Comment
1d1f800b 10/25/2018 02:43 PM jenkins

Merge branch 'release/5.4.0'

42b6eb5f 10/25/2018 02:26 PM jenkins

updating poms for branch'release/5.4.0' with non-snapshot versions

cb56c869 10/25/2018 10:18 AM Andreas Müller

cleanup

aaee4922 10/25/2018 10:17 AM Andreas Müller

ref #7283 fix NPE in AlternativeIdentifier constructor if no type is given

1af15fb7 10/24/2018 01:31 PM Andreas Müller

#7859 reverted max size for Pref.value. Test failed, need to check why we have the test.

325c8ebc 10/24/2018 12:58 PM Andreas Müller

#7859 Changed length to 2000. Still need update script

a7058992 10/24/2018 12:54 PM Andreas Müller

cleanup

dba801a9 10/24/2018 10:08 AM Andreas Müller

#7849 set allow override to true as default in cdmlib CdmPreference

f57aebc4 10/23/2018 11:41 AM Andreas Kohlbecker

ref #7831 using uuids in findTaxonNameParts() methods as name exclude filter - NPE fix

2ac69f0c 10/22/2018 05:40 PM Andreas Kohlbecker

ref #7831 using uuids in findTaxonNameParts() methods as name exclude filter

aec3c7b7 10/22/2018 05:06 PM Andreas Kohlbecker

ref #7791 adding rank order index to TaxonGraphNodeDTO

876970d9 10/22/2018 05:05 PM Andreas Kohlbecker

ref #7834 bugfix: returning empty page when no name matches

4670ff1d 10/19/2018 06:03 PM Andreas Kohlbecker

ref #7834 avoiding NPE in case of names which are not in the graph

72937d27 10/19/2018 01:44 PM Andreas Kohlbecker

fix #7779 fixing missing file extension in StaticSwaggerApiDoc controller

695c2b14 10/19/2018 11:42 AM Andreas Kohlbecker

fix #7779 adapting the creation delivery of the static swagger doc to version 2.6.1

c8631826 10/19/2018 08:56 AM Katja Luther

ref #7345: rename cdmPreference for common name marker

c8e611f0 10/19/2018 06:55 AM Katja Luther

ref #7793: add preferencePredicate for disable multiple classifications

ae797143 10/18/2018 08:05 PM Andreas Kohlbecker

ref #7770 fixing layout issue and menu items active state and updating diffs

ef485f52 10/18/2018 07:42 PM Andreas Kohlbecker

#7770 documenting springfox-swagger-ui update process

dac99c73 10/18/2018 07:09 PM Andreas Kohlbecker

ref #7779 applying Cdm specific changes to springfox-ui:
- preserving the modified index.hml as index-last.html
- creatng diffs with the changes applied last time
- applying cdm changes to springfox.js and index.html

24e59406 10/18/2018 06:35 PM Andreas Kohlbecker

ref #7779 upgrading springfox-swagger-ui to 2.6.1 and preserving the modified springfox.js as springfox-last.js

8ea0f81f 10/18/2018 03:53 PM Andreas Kohlbecker

ref #7779 upgrading springfox-swagger-ui to 2.6.1 and preserving the modified springfox.js as springfox-last.js

f37e7436 10/18/2018 03:06 PM Andreas Kohlbecker

fix #7834 findInTaxonGraph implemented for Registrations with RegistrationDTOController endpoint

c0f42391 10/18/2018 02:29 PM Katja Luther

fix problems for taxEditor preferences

43a34efe 10/18/2018 09:51 AM Katja Luther

ref #7345: add preferencePredicate for commonname references

9b6c1bf1 10/18/2018 09:06 AM Katja Luther

restructure preference predicates and add newTaxeditorInstance to cdmPreference

efc5d1e3 10/17/2018 04:16 PM Andreas Kohlbecker

ref #7831 adding name exlude filter to TaxonNamePartsFilter

a2a58fcc 10/17/2018 02:34 PM Andreas Müller

Add tax editor preferences utilities

388fc07c 10/17/2018 12:39 PM Andreas Kohlbecker

ref #7648 fixing bugs related to single taxa per graph and updating rels from lower ranks, with testcase

3b82f2c7 10/17/2018 12:39 PM Andreas Kohlbecker

ref #7791 adding CORS headers to TaxonGraphService method

1c4a145c 10/16/2018 06:05 PM Andreas Müller

ref #7829 ref #7800 remove nomenclaturallyRelevant from Reference matching as it is not used at all

517ecf1f 10/16/2018 05:52 PM Andreas Müller

ref #7800 add specific subclass matching to matching strategies

c7a433e1 10/16/2018 05:49 PM Andreas Müller

cleanup

032bbbac 10/16/2018 12:36 PM Katja Luther

code cleaning

c459863f 10/16/2018 11:54 AM Katja Luther

ref #7283: add service method to search for identifier and titleCache

a3141e13 10/15/2018 05:05 PM Patrick Plitzner

ref #7589 Fix transactional annotations

412ba757 10/15/2018 05:05 PM Patrick Plitzner

ref #7589 Remove auto creation of default description

0848df46 10/15/2018 05:05 PM Patrick Plitzner

ref #7589 Move long running task to corresponding service

  • this solves the deadlocks when opening the matrix editor
8bbd4f27 10/15/2018 12:04 PM Andreas Kohlbecker

fix #7785 CdmUserHelper can use ICdmEntityUuidCacher to avoid loading entities from the db for permission checks:
- inner class CachingCdmUserHelper to be used when CdmUserHelper.withCache() is called
- ICdmEntityUuidCacher and CdmTransientEntityAndUuidCacher complements the CdmTransientEntityCacher by the ability to get CDM entities from the cache by the UUID

f6275b1f 10/14/2018 02:49 PM Andreas Müller

ref #7801 unify cache initialization in deduplicationHelper

96741cad 10/14/2018 02:48 PM Andreas Müller

cleanup

3f3714e3 10/14/2018 09:45 AM Andreas Müller

ref #7799 compute author caches in deduplicationHelper

886e3f27 10/12/2018 06:35 PM Andreas Kohlbecker

ref #7648 avoiding NPE during equality check in TaxonGraphBeforeTransactionCompleteProcess

644bd633 10/12/2018 06:12 PM Andreas Kohlbecker

ref #7648 adding links to the ticket as preliminary rudimentary documentation

ee7aab02 10/12/2018 05:38 PM Andreas Kohlbecker

ref #7709 fixing missing runAsAuthenticator for RunAsAdmin, TaxonGraphHibernateListener and test

6623206c 10/12/2018 04:57 PM Andreas Kohlbecker

ref #7709 adding missing @CdmHibernateListener config annotation to allow activating the TaxonGraphHibernateListener bean

8a790929 10/12/2018 01:23 PM Andreas Kohlbecker

ref #7709 adding REGISTRATION to ClearDBDataSet.xml to solve test problems

7df5025d 10/12/2018 01:23 PM Andreas Kohlbecker

removing useless annotation

8d2b7d49 10/12/2018 01:13 PM Katja Luther

ref #7793: add preferencePredicates for taxeditor

6c5e8c9a 10/12/2018 12:28 PM Andreas Müller

cleanup

9672401c 10/12/2018 11:16 AM Andreas Kohlbecker

ref #7709 JUnit testsuite to reproduce the test failure when running RegistrationIdentifierMinterTest and TaxonGraphHibernateListenerTest sequentially

8c2c3497 10/12/2018 10:09 AM Andreas Müller

cleanup

e7c1c8fa 10/11/2018 04:24 PM Patrick Plitzner

Change system.out to log.info()

f528c666 10/11/2018 09:07 AM Andreas Kohlbecker

ref #7648 free configurable TaxonGraphHibernateListener ready

48e27c57 10/10/2018 06:02 PM Andreas Kohlbecker

ref #7648 moving TaxonGraphHibernateListener and related classes into cdmlib-service

f7df0b93 10/10/2018 05:51 PM Andreas Kohlbecker

ref #7648 TaxonGraphHibernateListener as Spring bean configured via the CdmHibernateListenerConfiguration

fb8a4982 10/10/2018 05:51 PM Andreas Kohlbecker

fixing usage of wrong logger in RunAsAuthenticator

134e39f0 10/10/2018 05:51 PM Andreas Kohlbecker

sanitizing contoller method doGetIncludedTaxa

87cbb479 10/10/2018 02:47 PM Katja Luther

ref #7793: preferencePredicate for mediaview and checklist perspective

1b9b7bfd 10/10/2018 10:30 AM Andreas Müller

ref #7799 handle initials for teamOrPerson.getFullTitle

c277d1a7 10/10/2018 10:30 AM Andreas Müller

ref #7799 handle protected titlecache for teamOrPerson.getFullTitle

d6fcab17 10/10/2018 10:30 AM Andreas Müller

cleanup

0211eb37 10/10/2018 09:14 AM Katja Luther

add new preferencePredicates

29b3b816 10/08/2018 08:16 AM Andreas Kohlbecker

commenting createTestDataSet() @Test annotation

11ab88e8 10/05/2018 06:34 PM Andreas Kohlbecker

ref #7648 automatic management of lower ranked names in the taxon graph

4c90f595 10/05/2018 03:59 PM Andreas Kohlbecker

Merge branch 'feature/#7648' into develop
- TaxonGraphDao
- TaxonGraphController
- TaxonGraphService
- TaxonGraphDTO
- TaxonGraphHibernateListener and processor
- tests

19628819 10/05/2018 03:58 PM Andreas Kohlbecker

ref #7648 fixing problems in TaxonGraphTest

91e05af0 10/05/2018 03:23 PM Andreas Kohlbecker

ref #7791 TaxonGraphDao supressing Names associated with Registrations where the status is not PUBLISHED

4c5284df 10/05/2018 02:55 PM Andreas Kohlbecker

ref #7648 moving taxongraph methods from taxonDao to taxonGraphDao

9bdd2739 10/05/2018 02:46 PM Andreas Kohlbecker

ref #7791 TaxonGraphNodeDTO with rank labels

81c01935 10/04/2018 09:44 PM Andreas Kohlbecker

ref #7648 more pulling up into AbstractHibernateTaxonGraphProcessor

75338ad3 10/04/2018 09:09 PM Andreas Kohlbecker

ref #7648 common base class AbstractHibernateTaxonGraphProcessor to deduplicate TaxonGraph methods

9a2d0b71 10/04/2018 08:21 PM Andreas Kohlbecker

ref #7648 allowing to set the TaxonGraphHibernateListener inactive - only for test environments

15d2f2bf 10/04/2018 08:21 PM Andreas Kohlbecker

ref #7648 allowing to set the TaxonGraphHibernateListener inactive - only for test environments

5e4cc7ea 10/04/2018 07:05 PM Andreas Kohlbecker

ref #7648 solving session corruption problems in test suite for TaxonGraphHibernateListenerTest

196c665f 10/04/2018 04:54 PM Andreas Kohlbecker

ref #7648 fixing inconsistency in test data and improving logging

5e403d42 10/04/2018 02:48 PM Andreas Kohlbecker

ref #7791 using name.titleCache as title for TaxonGraphNodeDTO

e8f10d34 10/04/2018 08:33 AM Andreas Müller

adapt CdmPermissionClass

bc08a1ea 10/03/2018 01:22 AM Andreas Müller

cleanup

0962e21b 10/02/2018 07:06 PM Andreas Kohlbecker

ref #7791 TaxonGraphService and TaxonGraphController implemented

38588c66 10/02/2018 06:42 PM Andreas Kohlbecker

ref #7648 correct handling existing taxa without secReference

335d7c23 10/02/2018 06:16 PM Andreas Kohlbecker

ref #7648 introducing CdmPreferenceLookup for cached access to the CdmProperty with predicate 'TaxonGraphSecRefUuid' and others
- using this Preference in TaxonGraphDaoHibernateImpl and TaxonGraphBeforeTransactionCompleteProcess
- adapting tests accordingly...

6b3c858a 10/02/2018 03:12 PM Andreas Kohlbecker

ref #7648 cleaning up and attempting to fix TaxonGraphService test setup

005f3c40 10/02/2018 12:01 PM Andreas Kohlbecker

ref #7648 all TaxonGraph updating done in a BeforeTransactionCompletionProcess implementation - TaxonGraphHibernateListener is working now

e15e805c 10/01/2018 03:23 PM Andreas Kohlbecker

ref #7648 TaxonGraphService as dao and TaxonGraphObserver as TaxonGraphHibernateListener

e9ca40c5 10/01/2018 11:00 AM Andreas Kohlbecker

ref #7648 TaxonGraphService complete with full set of tests

67861132 09/28/2018 06:55 PM Katja Luther

ref #7345: fix dao method to get entities with special marker and pattern in titleCache

601b8e6e 09/28/2018 06:40 PM Katja Luther

ref #7345: add dao and service methods to get UuidAndTitleCache marked with a special markerType

53f6e21d 09/28/2018 03:59 PM Andreas Kohlbecker

avoiding NPE when relationship type = null

d4babfbb 09/28/2018 03:57 PM Andreas Müller

ref #2764 ref #3817 move negative endemism states down in order

f8a8d72a 09/28/2018 03:15 PM Andreas Müller

ref #4822 use specific annotation type for distribution information

e1d2afdb 09/28/2018 03:14 PM Andreas Müller

cleanup

093a2fae 09/28/2018 03:14 PM Andreas Müller

ref #2764 ref #3814 add endemic non and unknown status

a8ef58b2 09/28/2018 01:24 PM Andreas Kohlbecker

ref #7648 initial implementation of TaxonGraphService with tests and TaxonGraphObserver

a400c76f 09/28/2018 11:14 AM Andreas Kohlbecker

fix #7795 untilis xml DataSets can optionally be created without "[NULL]" values

b1e975a8 09/28/2018 11:14 AM Andreas Kohlbecker

minor issue with return type of listToTaxonRelationships() fixed

490c3c24 09/27/2018 09:37 AM Katja Luther

check for protected caches in cdmlight export

57ed8811 09/27/2018 09:07 AM Katja Luther

smaller changes in cdmlightexport

eed70a73 09/27/2018 09:06 AM Katja Luther

smaller changes in cdmlightexport

005dd7a3 09/26/2018 11:25 PM Andreas Müller

cleanup

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