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cdmlib / cdmlib-services / src / main / java @ 73a78654

# Date Author Comment
73a78654 08/16/2019 10:00 AM Patrick Plitzner

ref #8467 add commented code

  • un-comment when cloned descriptions can be added to taxon descriptions as sources
fe8fa9b2 08/16/2019 09:01 AM Katja Luther

ref #3472: fix set name in source

743a64ea 08/15/2019 01:57 PM Katja Luther

ref #3472: make setting of name in source configurable

6c4f05ea 08/15/2019 10:41 AM Katja Luther

ref #3472: add nameInSource in makeTaxonNodeSynonym

d1d76c46 08/15/2019 10:34 AM Katja Luther

ref #3472: swap Synonym and accTaxon should move all taxon information to the new taxon

f5050d21 08/15/2019 10:22 AM Katja Luther

update caches prgress monitor with name

af1131f2 08/15/2019 10:20 AM Katja Luther

ref #8385: add method to get voc by uuid

b6177938 08/13/2019 03:13 PM Andreas Müller

ref #7099 add CdmAuthority to User, remove CDM_VIEW from tests, cleanup

7fbe6eb3 08/13/2019 03:13 PM Andreas Müller

ref #7099 rename CdmPermissionClass to PermissionClass

d5579203 08/13/2019 03:13 PM Andreas Müller

ref #7099 rename model.rights to model.permission

39a05e3b 08/13/2019 03:13 PM Andreas Müller

ref #7099 move CRUD and Operation to model

0377d70f 08/13/2019 03:13 PM Andreas Müller

ref #7099 move CdmPermissionClass to model

899b7d66 08/13/2019 03:13 PM Andreas Müller

ref #7099 move user, group and GrantedAuthorityImpl to new rights package

845c6b16 08/13/2019 09:13 AM Patrick Plitzner

ref #7597 Fix deletion of aggregated descriptions

7353eb10 08/13/2019 09:12 AM Patrick Plitzner

cleanup

8efb1fe4 08/13/2019 09:12 AM Patrick Plitzner

ref #7597 Use UUID for service call

a083a070 08/12/2019 06:20 PM Patrick Plitzner

ref #7597 Fix concurrent modification exception

1a5b2194 08/12/2019 04:18 PM Andreas Kohlbecker

ref #8437 fixing LIE in DerivedUnitFacadeController

51c30254 08/12/2019 03:43 PM Patrick Plitzner

ref #7597 Delete all aggregated descriptions when re-aggregating

19b30c4f 08/12/2019 12:05 PM Andreas Kohlbecker

ref #8437 ITermTreeService termType Feature as filter includes also Character

8cb3295a 08/12/2019 10:01 AM Katja Luther

setters of subtreeConfigurator should be void again, adapt tests

d12aae39 08/09/2019 12:32 PM Katja Luther

ref #8282: adapt save taxonnode to new doubtful attribute

3de07382 08/08/2019 10:08 PM Andreas Müller

minor

dead0aaf 08/08/2019 03:24 PM Patrick Plitzner

ref #7597 Add configuration to data set aggregation

  • implement recursive aggregation
c44fd9bd 08/08/2019 02:22 PM Andreas Müller

fix #8446 Allow setPublish for subtree to filter for hybrids

5fb16579 08/07/2019 01:39 PM Andreas Müller

fix #7450 allow setPublish for subtree to include misapplied names and pro parte synonyms

5593cba0 08/07/2019 09:31 AM Andreas Kohlbecker

fixing NPE in DerivedUnitFacadeCacheStrategy.getUnitNumber()

27296e89 08/06/2019 02:14 PM Andreas Müller

cleanup and stream API for ForSubtreeConfigurator

e867c225 08/06/2019 12:53 PM Andreas Müller

ref #7450 implement interfaces and signatures for setPublishForSubtree for misapplications and ppSyns (not yet implemented)

e7eee67d 08/06/2019 12:34 PM Patrick Plitzner

ref #7597 Add progress monitor to aggregation service call

ab6c57c0 08/06/2019 11:19 AM Katja Luther

ref #8365: fix NPE in abcd tests

4e9e938f 08/06/2019 10:02 AM Katja Luther

use configurator for setPublish flag

f928093b 08/05/2019 04:19 PM Andreas Müller

ref #7450 revert the incorrect c&p from last commit

53df0a40 08/05/2019 04:11 PM Andreas Müller

ref #7450 use PublishForSubtreeConfigurator in TaxonNodeService

c1a30095 08/05/2019 04:11 PM Andreas Müller

cleanup

7bd0a31e 08/05/2019 04:11 PM Andreas Müller

minor

f93dab43 08/05/2019 09:59 AM Katja Luther

Revert "minor - fix merge conflict"

This reverts commit fc3932ac4dd186b6f5809863356912f949ae202d.

fc3932ac 08/05/2019 09:51 AM Katja Luther

minor - fix merge conflict

7449720a 08/02/2019 05:47 PM Andreas Kohlbecker

ref #8365 adding combination of collection code and unit number as specimenLabel to DerivedUnitFacade

2ef4c225 08/02/2019 11:18 AM Andreas Kohlbecker

ref #8437 using the listByRestriction method in favour of a new untested dao method & implementing page method in ITermTreeService

b820a890 08/01/2019 03:00 PM Andreas Müller

ref #8437 first implementation for listBy termType for TermTreeService, not yet tested

b2205142 08/01/2019 12:18 PM Patrick Plitzner

ref #7597 Adapt to service changes and rename long running method

78aa2ad6 08/01/2019 10:01 AM Patrick Plitzner

ref #7597 Aggregation for each taxon based on associated specimens

af8e4c4e 07/31/2019 02:15 PM Andreas Kohlbecker

ref #8414 adding cycle detection to loadFieldUnitDTO()

6b0f8cdf 07/30/2019 09:37 PM Andreas Müller

fix #8426 fix IOOB Exception in RegistrationWorkingSet serialization

aa8cf7e6 07/30/2019 12:09 PM Andreas Kohlbecker

first implementation of /portal/name/{uuuid}/typeDesignationsInHomotypicalGroup

d2cbce25 07/30/2019 08:44 AM Andreas Kohlbecker

ref #8414 refactoring OccurrenceController:
- method to load a single FieldUnitDTO
- adding all intermediate derivatives to the FieldUnitDTO
- renaming service endpoint mapping to fieldUnitDTO
- adding missing @Transactional annotations
- Factory method in abstract DerivateDTO to construct specific subtype DTOs

dc572c3e 07/27/2019 01:19 AM Andreas Müller

adapt DescriptiveDataSet to allow also descriptive systems with features not only characters

21410a84 07/26/2019 01:28 AM Andreas Müller

cleanup

98b0b483 07/25/2019 03:21 PM Andreas Müller

remove createDefaultFeatureTree from ITermTreeService

549e8cc5 07/25/2019 03:20 PM Andreas Müller

ref #6794 rename IFeatureTreeDao in ITermTreeDao

99e01f35 07/24/2019 04:24 PM Andreas Müller

ref #8404 Add update step list within updaters

c5564cac 07/24/2019 11:24 AM Andreas Müller

ref #6794 remove FeatureNodeService from BatchValidationUtil

d10ceac8 07/24/2019 11:20 AM Andreas Müller

ref #6794 delete FeatureDao

2f72f4da 07/22/2019 06:41 PM Andreas Müller

ref #6794 add TermNodeService and TermTreeService and make FeatureXXX services deprecated

eb9880a0 07/22/2019 06:39 PM Andreas Müller

ref #6794 rename some parameters, methods and classes

76463827 07/22/2019 01:31 PM Andreas Müller

ref #6794 rename TermTreeNode -> TermNode

3048fbc9 07/19/2019 08:45 PM Andreas Müller

ref #6794 add TermRelation and rename FeatureNode -> TermTreeNode

ref #6794 add TermRelation and TermRelationBase

12740fe1 07/19/2019 08:42 PM Andreas Müller

ref #6794 change FeatureTree to TermTree

0d80c92f 07/19/2019 08:42 PM Andreas Müller

ref #6794 add TermRelation and rename FeatureNode -> TermTreeNode

0d79c535 07/19/2019 06:14 PM Andreas Müller

ref #6794 remove references to TermVocabulary.iterator()

b72678a6 07/19/2019 06:14 PM Andreas Müller

ref #6794 change FeatureTree to TermTree

ec978653 07/19/2019 06:14 PM Andreas Müller

ref #6794 add TermRelation and rename FeatureNode -> TermTreeNode

4e5c4e73 07/19/2019 06:14 PM Andreas Müller

cleanup and ref #6794 rename TermTreeDaoImpl

b3340748 07/19/2019 06:14 PM Andreas Müller

ref #6794 change FeatureTree to TermTree

951c829f 07/19/2019 06:13 PM Andreas Müller

ref #6794 add TermRelation and rename FeatureNode -> TermTreeNode

c45d681a 07/16/2019 03:16 PM Andreas Kohlbecker

ref #8369 SpecimenTypeDesignationDTO: adding missing getters and basing on TypedEntityReference

12516e6b 07/16/2019 12:07 PM Andreas Kohlbecker

ref #8365 removing parentheses from code + accession number - again

28702a86 07/12/2019 05:33 PM Andreas Kohlbecker

implemting TypeDesignationPortalController

3000a28d 07/12/2019 02:44 PM Andreas Kohlbecker

ref #8365 stripping collection code from accession number only if followed by whitespace

a9b9edad 07/11/2019 06:11 PM Andreas Kohlbecker

ref #8365 removing parentheses from code + accession number

f1248e50 07/11/2019 06:02 PM Andreas Kohlbecker

ref #8365 stripping collection code from accession number in DerivedUnitFacadeCacheStrategy

d1b223ad 07/05/2019 12:24 AM Andreas Kohlbecker

addinional RegistrationService test and a bit of cleaning up

0fb7c9e1 07/04/2019 10:40 PM Andreas Kohlbecker

ref #8352 controller and service to find registrations by name

54e11d53 07/04/2019 10:40 PM Andreas Kohlbecker

ref #8354 implenting registration serch by taxonUUIDs which also covers typedesignations

c40f420c 07/02/2019 03:10 PM Andreas Kohlbecker

fix #8287 implementing support for null type status as filter value in Registration service

f69d6df9 07/01/2019 06:52 PM Andreas Kohlbecker

ref #8330 removing unused and obsolete service methods which are replaces by the new one

58cbdc8e 07/01/2019 06:32 PM Andreas Kohlbecker

ref #7620 filtered registration search implemented with filter string for references

9ccf877c 07/01/2019 03:28 PM Andreas Kohlbecker

ref #8330 dao method for filtered registration search implemented: reprocduces existing functionality plus extended name search ref #7885

c2447263 07/01/2019 01:51 PM Andreas Kohlbecker

ref #8330 completing documentation regarding wildcards and fixing bug with MatchMode LIKE when using Restrictions

84cd43e7 07/01/2019 01:51 PM Andreas Kohlbecker

ref #8330 documentation for RegistrationService.page and RegistrationWorkingsetService.pageDTO

5479041f 06/27/2019 02:10 PM Katja Luther

Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into develop

f769c20b 06/27/2019 02:09 PM Katja Luther

smaller changes in ABCD import

b3e21c63 06/26/2019 10:05 AM Katja Luther

ref #8182: handle not existing dna for accession number

67c8f20e 06/04/2019 12:40 PM Andreas Kohlbecker

ref #8321 implementing page by restriction method to allow for flexible web service queries, also protecting unpublished taxa and names ref #3560

2b4d0842 06/03/2019 05:25 PM Andreas Kohlbecker

generic webservice method for all cdm entitiy list controllers to search by Restriction

49fdbd9a 05/31/2019 09:24 AM Andreas Kohlbecker

fix #8319 NomenclaturalStatus webservice and according service methods implemented

442916a4 05/29/2019 12:59 PM Katja Luther

ref #8182: adapt occurrence DTOs to use them in details page of blast result

4d025474 05/27/2019 12:49 PM Katja Luther

ref #8045: add remove to preference service and dao

9298a53f 05/24/2019 02:23 PM Patrick Plitzner

ref #6774 Add service method findVocabularyDtoByTermTypes()

86dde6da 05/24/2019 01:59 PM Andreas Kohlbecker

ref #8209 modularization of reference init strategies - bug fix

26e4e4de 05/24/2019 11:49 AM Andreas Kohlbecker

ref #8209 modularization of reference init strategies

01ca9bae 05/24/2019 11:36 AM Andreas Kohlbecker

ref #8209 modularization of reference init strategies and improving EntitiyInitStrategy class

fa2b2dbb 05/20/2019 12:35 PM Andreas Kohlbecker

ref #7966 preparing web service contollers to search for NULL type status via UUID parameter

5fd9990b 05/17/2019 04:02 PM Andreas Kohlbecker

fixing NPE in TypeDesignationStatusFilter processing when '- none -' is selected

b7723abf 05/17/2019 02:46 PM Andreas Kohlbecker

fix #8279 avoiding ClassCastExceptin in CdmUserHelper

e358ae18 05/16/2019 09:09 AM Andreas Müller

fix findTitleCache in service layer

92657983 05/08/2019 01:04 PM Katja Luther

ref #7433: changes to get dnaSample for genetic accession number

fe0361ed 05/07/2019 04:39 PM Patrick Plitzner

ref #8263 Set vocabulary DTO for all term DTOs during initialization

48e5bbde 05/07/2019 12:12 PM Patrick Plitzner

fix #8257 Remove factory methods for term node creation

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