Edit

ref #6527: define default for media deletion

fix missing includeSynonym parameter in taxaByName search

fix #6480: fix delete of specimenOrObservations

fix compile error and some cleanup

revert a change in the last commit

fix #6281: call a flush after removing the synonym from taxon seems to fix the problem

ref #5752 wrap specific exception to avoid dependency on lucene library

adapt GrantedAuthorityImpl factory method

add saveOrUpdate to ICommonService

missed to add adapted interface

cleanup

ref #4232 implement comparator contract for DistributionNodeByAreaLabelComparator

ref #6484 Fix test for specimen count retrieval

• temporary fix until ticket is solved

ref #6419 update remaining bean names for cdmRepository

fix #6381 Also use barcode or catalogue number for titlecache if accession number not exists

ref #6262: adding funtionality to library to access rights for selection dialog

Cleanup

ref #6419 renaming ICdmApplicationDefaultConfiguration to ICdmRepository

file formatting reg. line breaks and a README

ref #2939 option to set the CacheManager directly, needed for the taxeditor

ref #2939 taking configurations out of the compenent scan\n, a more finegraned strategy is needed for the variety of situations we have to deal with

fix #2939 dynamic configuration of the ehcache store location per remote instance

merge for groups has to check for existing and changed authorities before merge the group

fix #1606: minor

ref #6362 remove further occurrences of NonViralName

ref #6365 use TaxonNameFactory for zoological names

ref #6365 Move all ZoologicalName attributes up to TaxonNameBase

ref #6362 removed some NonViralName occurrences (non-compiling as changing in model are still missing)

fix #6354 non phrase search with wildcard using the standart QueryParser

fix #4223 using the ComplexPhraseQuery for phrase searches with wildcards

fix #3465 Progressmonitor API and better UpdateResult handling for setSecundumForSubtree

cleanup

ref #6190 removing svn property place holder in first line of code - java files

ref #6283: minor changes to fix exceptions in polytomous key editing

minor

fix #6135 allow nameCache for merked taxa search

fix #6134 add group taxa by marker and refactor treeindex handling

Cleanup and replace int by long in count

fix #6211 reduce initialization for synonymy

ref #4867 Set sec reference for taxa in cloned classification

Minor changes to classification clone method

Clean up deprecated methods in name service

ref #4866 Fix transient object exception

• fixed typo

fix compile error in ITaxonNodeService

fix #6174: isDeletable needs to be called with UUID and the objects is
loaded on server side

fix media deletion

ref #2380 Implement service for getting parent of
UuidAndTitleCache

• parent of either ITaxonTree or UuidAndTitleCache can be retrieved
• added JUnit test and test file

fix #4453 Enhance portal visualization of molecular data

• used DefinedTerm constants for UUIDS
• used titleCache for all DerivedUnits
• move string representations to portal code

ref #5974 implement substitute method for TaxonService.getAllRelationships

Merge remote-tracking branch 'origin/develop' into develop