ref #8539 Performance and session handling fixes
ref #8539 Filter aggregated, literature or default descriptions
ref #8350: create new predicate for namedArea search by abbreviation
ref #8526: fix failing test in editor
ref #8526: fix failing test
ref #8526: fix swap syn and acc taxon in service method
cleanup
fix #8519 adding ROLE_USER_MANAGER to FirstDataInserter
ref #8505 adapting ApplicationConfiguration
ref #8517 DerivedUnitFacadeCacheStrategy handling protected FieldUnit title caches correctly
remove deprecated listRankSpecificRootNodes
Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into develop
SpecimenTypeDesignation representations for names
ref #8479 add listUUIDs method
ref #8479 ordering for taxon nodes implemented in TaxonNodeFilter and in loadById
rename rollback method
add rollback to ICdmRepository and use in TaxonNodeOutStreamPartitioner
ref #8437 using TermType.getGeneralizationOf() to expand the termType restriction
fix #8480 Use DescriptionTypes in descriptive data set service
ref #8432 adapt javadoc
move term node DAOs to term package
ref #8467 add commented code
ref #3472: fix set name in source
ref #3472: make setting of name in source configurable
ref #3472: add nameInSource in makeTaxonNodeSynonym
ref #3472: swap Synonym and accTaxon should move all taxon information to the new taxon
update caches prgress monitor with name
ref #8385: add method to get voc by uuid
ref #7099 add CdmAuthority to User, remove CDM_VIEW from tests, cleanup
ref #7099 rename CdmPermissionClass to PermissionClass
ref #7099 rename model.rights to model.permission
ref #7099 move CRUD and Operation to model
ref #7099 move CdmPermissionClass to model
ref #7099 move user, group and GrantedAuthorityImpl to new rights package
ref #7597 Fix deletion of aggregated descriptions
ref #7597 Use UUID for service call
ref #7597 Fix concurrent modification exception
ref #8437 fixing LIE in DerivedUnitFacadeController
ref #7597 Delete all aggregated descriptions when re-aggregating
ref #8437 ITermTreeService termType Feature as filter includes also Character
setters of subtreeConfigurator should be void again, adapt tests
ref #8282: adapt save taxonnode to new doubtful attribute
minor
ref #7597 Add configuration to data set aggregation
fix #8446 Allow setPublish for subtree to filter for hybrids
fix #7450 allow setPublish for subtree to include misapplied names and pro parte synonyms
fixing NPE in DerivedUnitFacadeCacheStrategy.getUnitNumber()
cleanup and stream API for ForSubtreeConfigurator
ref #7450 implement interfaces and signatures for setPublishForSubtree for misapplications and ppSyns (not yet implemented)
ref #7597 Add progress monitor to aggregation service call
ref #8365: fix NPE in abcd tests
use configurator for setPublish flag
ref #7450 revert the incorrect c&p from last commit
ref #7450 use PublishForSubtreeConfigurator in TaxonNodeService
Revert "minor - fix merge conflict"
This reverts commit fc3932ac4dd186b6f5809863356912f949ae202d.
minor - fix merge conflict
ref #8365 adding combination of collection code and unit number as specimenLabel to DerivedUnitFacade
ref #8437 using the listByRestriction method in favour of a new untested dao method & implementing page method in ITermTreeService
ref #8437 first implementation for listBy termType for TermTreeService, not yet tested
ref #7597 Adapt to service changes and rename long running method
ref #7597 Aggregation for each taxon based on associated specimens
ref #8414 adding cycle detection to loadFieldUnitDTO()
fix #8426 fix IOOB Exception in RegistrationWorkingSet serialization
first implementation of /portal/name/{uuuid}/typeDesignationsInHomotypicalGroup
ref #8414 refactoring OccurrenceController: - method to load a single FieldUnitDTO - adding all intermediate derivatives to the FieldUnitDTO - renaming service endpoint mapping to fieldUnitDTO - adding missing @Transactional annotations - Factory method in abstract DerivateDTO to construct specific subtype DTOs
adapt DescriptiveDataSet to allow also descriptive systems with features not only characters
remove createDefaultFeatureTree from ITermTreeService
ref #6794 rename IFeatureTreeDao in ITermTreeDao
ref #8404 Add update step list within updaters
ref #6794 remove FeatureNodeService from BatchValidationUtil
ref #6794 delete FeatureDao
ref #6794 add TermNodeService and TermTreeService and make FeatureXXX services deprecated
ref #6794 rename some parameters, methods and classes
ref #6794 rename TermTreeNode -> TermNode
ref #6794 add TermRelation and rename FeatureNode -> TermTreeNode
ref #6794 add TermRelation and TermRelationBase
ref #6794 change FeatureTree to TermTree
ref #6794 remove references to TermVocabulary.iterator()
cleanup and ref #6794 rename TermTreeDaoImpl
ref #8369 SpecimenTypeDesignationDTO: adding missing getters and basing on TypedEntityReference
ref #8365 removing parentheses from code + accession number - again
implemting TypeDesignationPortalController
ref #8365 stripping collection code from accession number only if followed by whitespace
ref #8365 removing parentheses from code + accession number
ref #8365 stripping collection code from accession number in DerivedUnitFacadeCacheStrategy
addinional RegistrationService test and a bit of cleaning up
ref #8352 controller and service to find registrations by name
ref #8354 implenting registration serch by taxonUUIDs which also covers typedesignations
fix #8287 implementing support for null type status as filter value in Registration service
