minor
Revert "fix #6360 moved all NonViralName functionality to TaxonNameBase"
This reverts commit 7d8c96134bda3c11d053df2e8e5d03f32a500ee3.
fix #6373 fixing MediaAutoInitializer
revert last minor change in misapplied name search
fix tests
fix #6296: fix the parameter settings in search queries
fix #6360 moved all NonViralName functionality to TaxonNameBase
fix #6296: fix problems for simple search
add test for different search combinations
fixed copy paste error for common name search
fix #6342: fix exception for ? in selection dialog
some code cleaning
fix #3465 Progressmonitor API and better UpdateResult handling for setSecundumForSubtree
ref #6296: minor
fix #6296: include the common name search into the search query of taxa and synonyms
fix #3465 implement setSecundumForSubtree
fix #6299: add openSession in getSession when there is no current session
minot
ref #6190 removing svn property place holder in first line of code
fix #6274: add an update for childrenCount cache if count of children not the same as the cache
ref #4766: prepair the sortindex updater for calling via IOService
Cleanup and new Rights Factory method
fix SortIndexUpdater bug for missing @id replacement
fix #6135 allow nameCache for merked taxa search
fix #6236 add alphabetic length ordering to name search
fix #6134 add group taxa by marker and refactor treeindex handling
fix #6128 include authorship option in taxon and name search
Cleanup and replace int by long in count
Fix proparte is null in update script
cleanup
fix sortindex updater and SynonymDeduplicator
Cleanup
solving polytomouskey node sort index problems
fix #6200 Change order of NomenclaturalCodeUpdater and allowOverride adder to avoid null values
cleanup and javadoc
ref #5976 add PKNode sortindex update
ref #5974 fix update script for synonym duplicates
ref #3925 and #5974 Improve update script for non unique subqueries
Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into develop
Conflicts: cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/ITaxonNodeService.java
ref #5458 Add classification filter to service method
ref #5458 Added find-by-titleCache method for taxon node service
ref #2380 Implement service for getting parent of UuidAndTitleCache
ref #2380 Implement service for getting children of UuidAndTitleCache
ref #5974 implement substitute method for TaxonService.getAllRelationships
Cleanup merge model 4.1/develop
Merge remote-tracking branch 'origin/develop' into develop
Conflicts: cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/taxon/TaxonNode.java cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonDaoHibernateImpl.java cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/TaxonNodeServiceImpl.java...
remaining merge issue for morge develop to cdm4.1
Merge remote-tracking branch 'origin/develop' into cdm-4.1
Conflicts: cdmlib-db/pom.xml cdmlib-ext/pom.xml cdmlib-io/pom.xml cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/excel/taxa/NormalExplicitImport.java cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/specimen/SpecimenImportBase.java...
fix #5634 Update excluded/unplaced for TaxonNodes with no taxon_id
fix #5974 fix moving synonym type to TaxonBase and SynonymRelationType label
ref #5952 Add index to identityCache
ref #3658 further improvements for NomCode update
#5634 Add excludedNote to TaxonNode (still some tests not running)
ref #3925 Adapt tests for moving unplaced and excluded
ref #6099: removing cascading to child nodes and adapting the service and persistence layer
ref #5826 adapt update script
Correct errors in update script
ref #3925 Move excluded and unplaced to TaxonNode
fix #5952 Add identityCache
fix #5952 Add fieldNumberCache
fix #5981 Add abbreviation to Rank "Cultivar"
ref #3658 remove nomenclaturalCode from all datasource related classes
ref #3658 Update nomenclatural code as CdmPreference (most probable value)
ref #5974 Replace synonym relationship update scripts (untested)
clean up and java doc
ref #5974 Replace synonymRelationshipType by SynonymType and replace some other occurrences of synonym relationship
ref #5974 Remove synonym relationship first compiling implementation in cdmlib
ref #5972: add method to count referencing objects
fix #6089 Remove taxonomicParentCache and taxonomicChildrenCount from Taxon
fix #6122 add titleCache service
fix #6120 Cleanup uuidAndTitleCache methods
ref #6065 Handle synonyms in taxonInContext
ref #6065 first implementation of taxonInContext service
ref #6066 add getChildNodes to classification service
ref #6087 adding orderINdex to TermDTO
fix #6061: search in titlecache and nomenclatural titleCache in getUuidAndAbbrevTitleCache
fix #6072 Implement findIdentifiableEntityByMarkers
ref #6089 Remove all calls and methods for taxonomicChildrenCount and taxonomicParentCache
fix #6066 Implement doPageChildNodes with doSynonyms
fix #5837: search on abbrevTitleCache instead of abbrev title
fix #5957 fix IndexOutOfBound exception and some other improvements for groupByHigherTaxon
fix #6061: search for titlecache if abbrev title is empty
ref #5837 implement search for nomenclatural title
fix #5828: add abbrevTitleCache and titleCache to uuidAndTitleCache
specimen import changes
missing changes in taxonDao
